Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  183  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54528973--54529041
35
2.0
35
83
11
88
36
4
4
55
1.40
54529174--54529411
43
5.6
43
86
1
343
24
17
28
28
1.97
54529507--54529557
12
3.8
13
82
10
59
7
19
31
41
1.80
54532391--54532542
42
3.6
41
71
11
119
25
19
24
31
1.98
54532355--54532540
85
2.2
85
88
0
264
25
19
24
30
1.98
54532355--54532578
85
2.6
84
82
4
216
26
18
25
29
1.98
54534445--54534473
11
2.5
12
94
5
51
24
6
0
68
1.13
54535170--54535337
71
2.4
71
86
2
239
18
26
19
35
1.95
54542154--54542205
26
2.0
26
100
0
104
26
0
23
50
1.50
54542474--54542626
42
3.6
41
80
7
157
26
20
26
27
1.99
54542469--54542626
84
1.9
85
91
1
264
25
20
26
27
1.99
54547239--54547293
29
2.0
28
82
7
67
50
0
1
47
1.11
54548364--54548410
14
3.4
14
79
8
51
31
2
4
61
1.27
54548487--54548521
18
1.9
18
94
0
61
28
2
0
68
1.04
54548403--54548688
138
2.1
140
81
6
332
42
11
5
40
1.63
54551727--54552111
136
2.8
135
87
1
554
32
14
12
39
1.84
54552832--54552870
18
2.2
18
90
0
60
48
10
10
30
1.70
54554035--54554091
25
2.3
25
100
0
114
59
0
3
36
1.14
54555561--54555604
23
1.9
23
81
9
54
31
4
9
54
1.52
54557908--54558037
49
2.7
49
81
3
147
28
20
28
23
1.98
54561790--54561860
35
2.0
35
94
0
124
36
16
9
36
1.82
54562308--54562401
37
2.5
38
78
13
97
40
39
9
10
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54565062--54565100
20
1.9
21
94
5
71
51
7
10
30
1.64
54567000--54567122
49
2.5
49
81
6
135
25
26
20
28
1.99
54567048--54567259
49
4.4
49
74
9
152
25
26
19
28
1.99
54567138--54567271
48
2.9
47
74
6
123
28
28
18
24
1.98
54569601--54569776
46
3.8
46
75
14
164
29
28
20
21
1.98
54569608--54569780
93
1.9
93
88
2
267
28
29
20
21
1.98
54572540--54572572
15
2.2
15
94
0
57
63
15
9
12
1.51
54577883--54578123
39
6.2
39
91
0
365
24
19
31
24
1.98
54589273--54589437
40
4.2
39
79
5
154
26
26
21
26
1.99
54589273--54589437
80
2.1
80
82
3
199
26
26
21
26
1.99
54591471--54591571
30
3.4
30
84
0
121
26
31
24
16
1.97
54593574--54593679
53
2.0
53
96
0
194
51
21
10
16
1.73
54595324--54595353
6
5.0
6
95
0
51
20
0
0
80
0.72
54602769--54602800
2
16.0
2
100
0
64
50
0
0
50
1.00
54608214--54608316
41
2.5
40
80
7
109
25
25
18
31
1.98
54609247--54609377
63
2.1
61
82
2
154
25
18
30
25
1.98
54621435--54621466
2
16.0
2
100
0
64
50
0
0
50
1.00
54630163--54630285
49
2.5
49
82
0
147
29
20
27
22
1.98
54630020--54630285
142
1.9
138
83
6
338
26
18
29
24
1.98
54634719--54634781
31
2.0
31
100
0
126
28
19
15
36
1.92
54635722--54635778
25
2.3
26
79
14
66
57
0
3
38
1.16
54637598--54637764
40
4.2
40
78
6
160
25
22
27
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54645599--54645765
40
4.2
40
78
6
160
25
22
27
24
2.00
54654817--54655810
205
4.9
205
94
1
1692
29
18
22
29
1.97
54655864--54655949
44
2.0
43
84
6
111
29
16
29
25
1.97
54656163--54656198
13
2.7
13
95
4
63
86
5
2
5
0.79
54656386--54656435
25
2.1
24
85
10
68
38
4
20
38
1.71
54656394--54656450
25
2.2
25
90
3
87
24
5
21
49
1.70
54656386--54656445
25
2.6
22
78
14
66
33
3
23
40
1.71
54656923--54656969
3
15.7
3
100
0
94
34
0
0
65
0.93
54657062--54657097
3
12.0
3
100
0
72
33
0
0
66
0.92
54657192--54657234
16
2.8
15
86
6
59
30
6
0
62
1.21
54657338--54657369
16
2.0
16
93
0
55
21
21
6
50
1.71
54657381--54657412
13
2.6
13
90
9
50
25
6
3
65
1.31
54657580--54657640
22
2.8
22
80
2
61
18
6
6
68
1.33
54657369--54657595
3
76.3
3
66
14
60
31
9
2
56
1.45
54658945--54658982
2
19.5
2
89
5
60
47
0
2
50
1.15
54660555--54660602
24
2.0
25
91
4
80
52
2
25
20
1.58
54662255--54662292
17
2.2
18
86
13
53
57
5
13
23
1.56
54668422--54668458
2
18.5
2
100
0
74
51
0
0
48
1.00
54668520--54668593
21
3.5
21
68
14
53
47
0
2
50
1.15
54669545--54669580
18
2.0
18
88
0
54
52
0
22
25
1.47
54669736--54669819
40
2.2
38
81
10
91
21
23
26
28
1.99
54673231--54673393
70
2.3
71
97
1
310
34
18
28
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54680302--54680465
71
2.3
71
97
0
310
34
18
28
18
1.95
54689529--54689675
44
3.4
42
82
10
174
23
18
25
32
1.97
54696371--54696405
13
2.7
13
100
0
70
14
25
25
34
1.94
54696397--54696431
17
2.0
18
88
5
54
17
40
28
14
1.88
54704490--54704651
47
3.5
46
86
4
200
50
11
8
29
1.68
54704542--54704632
27
3.6
27
65
29
74
49
10
9
29
1.70
54705966--54706012
14
3.1
15
75
9
51
70
4
2
23
1.16
54706753--54706925
88
2.0
88
83
4
224
36
20
9
32
1.85
54706936--54707016
10
8.7
9
68
12
56
61
0
1
37
1.04
54706942--54706999
19
3.0
19
87
2
80
60
0
0
39
0.97
54707043--54707181
30
4.7
29
76
9
113
28
5
2
63
1.30
54707022--54707170
58
2.5
58
81
10
178
27
5
3
63
1.32
54707128--54707180
10
5.2
11
76
17
51
20
3
1
73
1.08
54707088--54707188
40
2.5
40
82
6
116
25
4
1
67
1.21
54707105--54707188
19
4.3
19
73
10
71
26
3
2
67
1.19
54707060--54707181
59
2.1
59
84
9
160
28
4
1
65
1.20
54711101--54711145
23
2.0
23
86
4
65
31
15
4
48
1.65
54711503--54711550
15
3.2
15
87
0
69
62
2
6
29
1.31
54712883--54712954
34
2.1
34
100
0
144
23
29
20
26
1.99
54712951--54713073
46
2.6
46
76
8
124
24
28
18
28
1.98
54720037--54720153
35
3.3
35
87
1
171
16
12
29
41
1.85
54720248--54720322
36
2.1
36
94
0
132
29
2
21
46
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54720464--54720542
35
2.2
36
86
2
106
16
10
30
43
1.81
54722359--54722425
30
2.2
30
100
0
134
16
31
37
14
1.89
54722359--54722406
17
3.1
17
65
22
50
16
31
37
14
1.89
54723197--54723230
17
1.9
18
94
5
61
14
0
29
55
1.40
54728122--54728155
2
17.0
2
93
0
59
52
0
0
47
1.00
54728458--54728497
19
2.0
21
85
9
57
25
30
5
40
1.77
54745084--54745253
43
4.0
43
82
6
193
26
15
25
32
1.95
54747435--54747517
41
2.0
41
100
0
166
24
28
9
37
1.87
54747600--54747634
18
1.9
19
88
11
56
31
25
2
40
1.70
54754368--54754489
49
2.5
49
79
4
129
30
21
25
22
1.99
54760901--54760959
28
2.1
28
100
0
118
16
11
25
45
1.82
54762585--54762622
20
1.9
20
88
0
58
52
10
2
34
1.50
54768893--54768954
28
2.3
26
89
8
97
19
9
29
41
1.83
54768893--54768960
27
2.5
28
92
4
113
19
10
27
42
1.83
54770293--54770464
93
1.8
93
96
0
317
27
29
21
20
1.98
54770286--54770461
46
3.8
46
79
12
216
28
29
21
20
1.98
54777847--54778018
93
1.8
93
96
0
317
27
29
21
20
1.98
54777840--54778015
46
3.8
46
79
12
216
28
29
21
20
1.98
54786772--54786830
28
2.1
28
100
0
118
16
11
25
45
1.82
54788160--54788331
93
1.8
93
96
0
317
27
29
21
20
1.98
54788153--54788328
46
3.8
46
79
12
216
28
29
21
20
1.98
54795730--54795901
93
1.8
93
96
0
317
27
29
21
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54795723--54795898
46
3.8
46
79
12
216
28
29
21
20
1.98
54798798--54798835
20
1.9
20
88
0
58
52
10
2
34
1.50
54800300--54800361
16
3.8
16
69
23
56
43
0
19
37
1.51
54801216--54801325
49
2.2
49
87
3
150
32
21
24
20
1.98
54804463--54804586
43
2.9
43
78
4
126
23
16
27
33
1.95
54811799--54811910
43
2.6
42
80
2
152
31
16
24
28
1.96
54811996--54812033
20
1.9
20
88
0
58
28
2
34
34
1.71
54812664--54812697
15
2.3
15
89
0
50
11
2
41
44
1.56
54813069--54813109
22
1.9
22
95
5
75
21
29
39
9
1.86
54816068--54816129
19
3.2
19
68
20
56
20
16
12
50
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292