genome.fa.s9.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  120  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36152595--36152736	40	3.5	40	83	1	124	27	23	26	21	1.99
36152633--36152762	40	3.3	39	78	11	147	23	23	26	25	2.00
36161813--36161966	27	5.5	27	82	4	164	31	25	14	28	1.95
36161813--36161966	29	5.5	28	81	6	145	31	25	14	28	1.95
36161813--36161916	55	1.9	55	100	0	208	35	24	13	26	1.92
36164153--36164205	24	2.2	24	83	12	65	30	37	15	16	1.90
36175934--36176079	71	2.1	70	87	6	208	34	16	27	21	1.94
36181763--36181919	74	2.1	77	88	8	234	23	34	19	22	1.97
36181733--36181919	40	4.9	39	85	7	233	23	33	20	22	1.97
36189694--36189847	39	3.9	40	91	0	222	25	32	20	22	1.98
36189694--36189847	79	1.9	79	86	2	220	25	32	20	22	1.98
36194898--36195276	49	7.8	49	97	0	699	28	8	33	30	1.86
36194987--36195069	26	3.3	26	63	13	75	31	4	32	31	1.79
36195378--36195499	37	3.3	37	97	0	226	25	19	33	21	1.97
36207635--36207811	27	6.7	26	77	3	158	26	16	18	37	1.92
36207635--36207811	53	3.4	53	84	5	225	26	16	18	37	1.92
36212964--36213001	19	2.0	19	94	0	67	28	26	31	13	1.93
36212983--36213075	39	2.4	39	94	0	159	24	24	24	25	2.00
36214872--36214962	27	3.4	27	76	14	98	27	16	18	37	1.92
36214865--36215097	26	8.9	26	78	5	211	22	15	20	40	1.90
36214865--36215079	53	4.1	53	78	7	206	21	16	20	40	1.91
36214902--36215102	79	2.6	79	83	5	230	22	17	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36215971--36216024	24	2.3	24	80	3	65	11	24	9	55	1.64
36221314--36221630	45	7.1	44	88	6	399	28	28	19	23	1.98
36221314--36221630	90	3.6	89	88	3	453	28	28	19	23	1.98
36221314--36221630	135	2.4	135	87	4	439	28	28	19	23	1.98
36222812--36222841	2	15.0	2	100	0	60	50	0	0	50	1.00
36228703--36228921	40	5.4	40	86	0	267	26	23	26	22	2.00
36228862--36228942	40	2.0	40	82	0	99	29	24	25	19	1.99
36234628--36234818	39	4.9	39	91	0	301	23	23	30	22	1.99
36240150--36240366	78	2.7	80	85	3	285	26	23	26	22	2.00
36240150--36240366	40	5.4	40	87	2	276	26	23	26	22	2.00
36240307--36240392	40	2.2	40	82	0	100	27	25	26	19	1.99
36242465--36242517	21	2.5	22	76	11	56	32	18	7	41	1.79
36250314--36250357	21	2.1	21	100	0	88	25	11	31	31	1.91
36255147--36255198	27	1.9	27	84	7	70	32	25	23	19	1.97
36255340--36255382	22	2.0	22	85	0	59	44	27	18	9	1.80
36256023--36256069	25	1.9	24	82	4	58	14	36	34	14	1.88
36260747--36260791	21	2.3	18	85	11	54	24	31	6	37	1.81
36260763--36260791	9	3.2	9	100	0	58	20	34	0	44	1.52
36264259--36264303	12	3.6	12	82	11	63	37	11	8	42	1.72
36264254--36264307	26	2.1	26	100	0	108	38	12	11	37	1.79
36285458--36285483	12	2.2	12	100	0	52	30	26	7	34	1.85
36292013--36292229	56	3.9	56	85	1	267	27	13	23	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36293677--36293709	15	2.2	15	100	0	66	45	6	15	33	1.70
36300078--36300111	3	11.3	3	100	0	68	32	0	32	35	1.58
36300827--36300874	24	2.0	25	84	12	64	43	4	6	45	1.48
36300976--36301061	37	2.4	36	74	14	86	48	1	3	46	1.26
36302021--36302078	29	2.0	29	100	0	116	37	13	6	41	1.72
36302967--36303014	24	2.0	24	88	8	71	37	2	0	60	1.09
36302961--36303019	14	4.4	14	72	10	52	33	1	0	64	1.04
36305045--36305074	15	2.0	15	93	0	51	23	13	26	36	1.92
36306651--36306681	16	1.9	16	93	0	53	19	19	38	22	1.93
36306692--36306731	16	2.5	16	84	8	55	32	22	20	25	1.98
36308696--36308856	40	4.0	40	79	6	173	24	21	28	25	1.99
36315358--36315615	49	5.3	49	92	2	380	31	7	31	29	1.85
36317411--36317645	40	6.0	39	85	6	255	22	22	28	25	1.99
36317448--36317645	78	2.5	77	87	7	274	22	23	28	25	1.99
36326169--36326339	40	4.3	39	77	10	159	28	21	26	23	1.99
36328168--36328352	79	2.3	82	83	7	229	24	24	27	23	2.00
36328169--36328360	40	4.8	40	79	7	151	24	24	28	22	2.00
36328168--36328385	79	2.7	79	79	6	183	24	23	27	24	2.00
36336194--36336381	40	4.8	40	75	10	129	24	23	28	23	2.00
36337910--36338072	39	4.2	39	91	0	263	22	20	33	23	1.97
36337910--36338103	39	4.9	39	89	0	253	22	21	32	23	1.98
36342210--36342362	39	3.9	39	88	0	216	23	30	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36342205--36342361	78	2.0	79	92	1	262	24	29	21	24	1.99
36349046--36349096	16	3.1	17	86	8	79	17	0	3	78	0.90
36349046--36349095	5	9.4	5	81	16	57	18	0	4	78	0.91
36349056--36349100	21	2.1	22	91	4	74	17	0	2	80	0.82
36349049--36349096	11	4.4	11	82	17	64	16	0	4	79	0.89
36349610--36349643	12	2.8	12	90	0	50	26	2	2	67	1.19
36349610--36349657	15	3.4	15	75	21	50	27	2	4	66	1.21
36349849--36349894	20	2.3	19	85	10	65	23	4	0	71	1.03
36354540--36354702	39	4.2	39	86	7	199	27	28	19	23	1.98
36355002--36355291	41	7.1	40	89	4	314	33	22	23	20	1.97
36355033--36355291	41	6.4	40	92	1	365	33	22	23	20	1.97
36361167--36361265	43	2.3	42	84	6	128	24	14	30	31	1.94
36363137--36363191	20	2.8	20	88	0	83	32	23	12	30	1.92
36363237--36363284	25	1.9	25	86	0	69	27	18	22	31	1.97
36370608--36370653	18	2.5	18	92	3	74	36	10	19	32	1.87
36370602--36370653	18	2.9	18	85	0	68	32	9	23	34	1.87
36371260--36371383	26	4.8	26	88	3	171	29	23	19	27	1.98
36371433--36371499	20	3.3	20	87	4	100	32	17	11	37	1.87
36371535--36371581	24	1.9	25	86	4	69	27	14	21	36	1.93
36374979--36375015	19	1.9	19	94	0	65	18	10	2	67	1.32
36377415--36377585	93	1.8	93	96	0	315	27	29	22	20	1.98
36377407--36377587	46	3.9	46	81	9	233	27	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36381287--36381504	40	5.5	40	86	4	275	25	29	22	22	1.99
36388588--36388805	40	5.5	40	86	4	275	25	28	22	23	1.99
36390406--36390501	44	2.2	45	82	3	122	30	13	23	32	1.93
36390359--36390571	45	4.8	44	73	10	119	28	15	28	27	1.97
36390592--36390693	43	2.3	45	80	6	111	29	19	26	24	1.98
36390544--36390831	132	2.2	133	88	0	425	27	19	26	27	1.99
36390805--36390998	45	4.3	45	67	8	135	31	17	23	27	1.96
36390792--36391049	134	1.9	134	88	1	392	31	18	23	25	1.98
36393435--36393482	21	2.3	20	85	3	60	47	22	16	12	1.80
36394604--36394690	27	3.3	26	83	4	111	36	21	21	19	1.95
36410401--36410533	51	2.6	51	76	8	146	27	24	21	27	1.99
36410386--36410533	50	2.9	50	76	6	165	27	24	20	27	1.99
36417520--36417677	50	3.2	50	80	4	178	30	27	17	25	1.97
36419512--36419674	39	4.2	39	91	0	254	23	19	31	25	1.98
36419529--36419704	39	4.5	40	87	0	169	23	22	31	22	1.98
36423557--36423640	27	3.2	26	86	5	105	36	21	22	19	1.95
36426183--36426215	15	2.1	16	88	5	50	6	21	0	72	1.05
36426169--36426224	21	2.5	21	85	8	67	5	21	1	71	1.15
36429736--36429788	21	2.6	20	85	5	79	47	18	18	15	1.83
36432010--36432140	29	4.5	29	79	5	131	25	17	31	25	1.97
36436473--36436603	66	1.9	69	80	9	151	33	14	30	21	1.93
36440157--36440199	15	2.9	15	89	0	68	16	16	13	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36444749--36444906	68	2.3	68	77	13	153	20	27	15	35	1.94
36452197--36452354	68	2.3	68	77	13	153	20	27	15	35	1.94
36454534--36454819	89	3.2	87	71	10	222	30	19	19	30	1.97
36454521--36454851	176	1.9	176	86	3	470	31	21	18	29	1.97
36455730--36455918	3	63.3	3	77	7	170	28	5	3	61	1.36
36456008--36456053	20	2.3	19	85	10	65	23	4	0	71	1.03
36460654--36460717	31	2.1	31	90	0	101	25	23	15	35	1.94
36460930--36461076	24	6.2	24	89	3	226	26	20	22	30	1.98
36460930--36461076	71	2.1	71	93	0	249	26	20	22	30	1.98
36460930--36461076	47	3.1	48	89	2	226	26	20	22	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292