genome.fa.s9.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  137  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40663757--40663919	42	3.9	42	77	7	161	31	26	11	30	1.92
40664002--40664147	69	2.1	69	98	1	283	52	12	2	32	1.53
40664443--40664484	22	1.9	22	85	0	57	30	26	0	42	1.55
40671364--40671519	85	1.8	84	84	4	215	28	28	15	28	1.96
40671364--40671527	42	3.9	42	82	9	181	28	28	15	28	1.96
40673800--40673839	21	2.0	20	85	5	53	50	27	2	20	1.61
40683261--40683468	40	5.2	39	82	3	202	25	25	23	25	2.00
40683261--40683467	80	2.6	80	82	3	238	25	26	23	25	2.00
40685417--40685604	39	4.8	39	87	0	214	22	31	21	23	1.98
40685453--40685605	39	3.9	39	91	0	234	22	32	20	24	1.98
40689367--40689548	40	4.6	39	74	8	129	26	23	27	22	1.99
40697476--40697659	40	4.6	39	75	6	138	26	23	27	22	2.00
40697516--40697704	80	2.4	81	77	4	186	23	24	29	22	1.99
40704693--40704833	27	5.2	27	85	0	192	37	18	19	24	1.94
40704693--40704846	54	2.9	54	88	0	218	37	19	18	24	1.94
40704705--40704866	81	2.0	81	83	4	202	37	19	19	24	1.94
40711191--40711344	42	3.6	42	81	3	166	31	24	14	29	1.95
40717765--40717825	32	1.9	32	93	0	104	29	22	21	26	1.99
40719496--40719671	46	3.8	46	80	4	192	30	21	27	20	1.98
40719491--40719768	94	2.9	94	76	12	248	29	19	28	22	1.98
40721367--40721432	31	2.1	31	91	0	105	24	24	15	36	1.93
40721645--40721812	24	7.1	23	87	4	219	26	22	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40721645--40721813	71	2.4	72	90	3	270	26	21	23	28	1.99
40721624--40721812	47	4.0	47	86	6	249	25	22	23	28	1.99
40721871--40721927	9	5.9	9	73	15	51	35	21	8	35	1.84
40721859--40721929	20	3.5	20	94	0	124	32	21	11	35	1.89
40721864--40721918	11	5.4	11	70	16	55	30	20	12	36	1.90
40721966--40722015	25	2.0	25	84	0	64	26	22	24	28	1.99
40722280--40722492	24	9.0	24	89	3	290	26	22	23	28	1.99
40722301--40722493	71	2.7	70	92	2	314	26	21	23	29	1.99
40722550--40722606	9	5.9	9	73	15	51	35	21	8	35	1.84
40722538--40722608	20	3.5	20	94	0	124	32	21	11	35	1.89
40722543--40722597	11	5.4	11	70	16	55	30	20	12	36	1.90
40722645--40722692	25	2.0	24	83	4	60	25	18	25	31	1.98
40723837--40723916	27	3.0	27	78	10	78	23	23	18	33	1.97
40723923--40724199	27	10.2	27	74	8	152	31	9	19	40	1.83
40724062--40724199	54	2.6	54	84	4	188	31	7	21	39	1.82
40723947--40724184	81	2.9	80	75	12	223	31	9	18	39	1.83
40724177--40724379	27	7.6	27	85	6	209	41	7	22	28	1.81
40724062--40724264	54	3.8	54	79	5	133	36	7	19	36	1.81
40724151--40724380	81	2.9	81	84	3	223	40	8	21	29	1.83
40724177--40724380	54	3.8	54	83	4	234	41	8	22	27	1.82
40724376--40724481	27	4.0	27	80	7	119	32	10	20	36	1.87
40724411--40724490	26	3.0	28	81	9	78	33	10	18	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40724439--40724496	27	2.2	26	81	9	64	34	8	15	41	1.78
40727275--40727340	31	2.1	31	91	0	105	24	24	15	36	1.93
40727546--40727744	24	8.4	24	89	2	269	27	22	21	29	1.99
40727553--40727745	71	2.7	70	91	4	298	27	21	22	29	1.99
40727802--40727858	9	5.9	9	73	15	51	35	21	8	35	1.84
40727790--40727860	20	3.5	20	94	0	124	32	21	11	35	1.89
40727795--40727849	11	5.4	11	70	16	55	30	20	12	36	1.90
40728230--40728419	24	8.1	23	88	3	238	26	22	22	28	1.99
40728230--40728421	71	2.7	70	91	3	296	26	21	22	28	1.99
40728209--40728421	47	4.5	48	84	6	276	26	22	23	28	1.99
40728466--40728536	20	3.5	20	92	0	115	32	19	11	36	1.87
40728573--40728620	25	2.0	24	87	4	69	25	16	25	33	1.96
40728886--40729098	24	9.0	24	86	3	272	27	21	22	28	1.99
40728907--40729099	71	2.7	70	91	2	296	27	20	22	29	1.99
40729156--40729212	9	5.9	9	73	15	51	35	21	8	35	1.84
40729144--40729214	20	3.5	20	94	0	124	32	21	11	35	1.89
40729149--40729203	11	5.4	11	70	16	55	30	20	12	36	1.90
40727361--40729356	677	2.9	679	98	0	3811	30	24	16	28	1.96
40730459--40730523	27	2.4	27	82	5	78	20	23	20	36	1.95
40730554--40730792	27	8.8	27	76	6	187	31	9	19	39	1.84
40730669--40730806	54	2.6	54	84	4	188	30	8	21	39	1.84
40730784--40730993	27	7.7	27	82	4	226	40	8	22	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40730758--40730981	81	2.8	81	83	2	218	39	8	21	29	1.84
40730972--40731090	27	4.4	27	78	7	118	31	10	19	37	1.86
40731001--40731105	27	3.9	27	75	9	72	34	9	18	38	1.83
40737065--40737098	12	2.8	12	95	0	59	17	26	35	20	1.95
40740319--40740408	40	2.3	41	78	7	96	24	14	24	36	1.93
40740342--40740436	40	2.4	40	87	0	136	21	17	26	34	1.95
40748503--40748626	39	3.2	39	87	0	176	33	19	25	22	1.97
40753845--40753887	21	2.1	21	86	4	61	25	2	23	48	1.62
40759044--40759207	42	3.9	42	80	9	181	29	14	27	28	1.95
40777741--40777958	40	5.5	39	84	5	235	26	27	22	23	2.00
40784874--40785024	38	3.9	39	92	3	243	23	20	31	23	1.98
40784875--40785055	38	4.6	39	88	2	240	23	22	30	23	1.99
40784881--40785079	76	2.6	77	84	4	204	23	22	31	23	1.99
40791514--40791561	25	1.9	25	86	0	69	33	25	16	25	1.96
40791605--40791663	20	3.0	20	92	0	100	37	11	20	30	1.89
40791714--40791831	23	5.0	24	86	8	154	27	22	23	26	1.99
40792023--40792086	31	2.1	31	96	0	119	39	15	21	23	1.92
40797161--40797332	93	1.8	93	88	4	267	27	28	20	22	1.99
40797154--40797329	46	3.8	46	76	11	171	28	28	20	22	1.98
40797162--40797348	46	4.0	46	69	22	124	28	28	20	22	1.99
40804222--40804352	59	2.3	57	92	5	210	33	13	25	26	1.94
40804192--40804352	29	5.5	30	88	7	206	32	13	26	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40812116--40812246	59	2.3	57	92	5	210	33	13	25	26	1.94
40812086--40812246	29	5.5	30	88	7	206	32	13	26	27	1.94
40824252--40824451	38	5.3	38	87	2	276	21	20	25	33	1.97
40827887--40828021	40	3.4	40	98	0	261	28	30	20	20	1.97
40830957--40831139	39	4.6	39	87	0	240	24	22	30	22	1.99
40838983--40839203	39	5.6	39	90	1	318	24	22	30	23	1.99
40838983--40839203	116	1.9	118	87	1	329	24	22	30	23	1.99
40838983--40839203	77	2.8	78	89	2	318	24	22	30	23	1.99
40842351--40842472	43	2.9	42	79	7	138	27	26	15	30	1.96
40850157--40850194	20	2.0	20	89	5	60	39	5	2	52	1.38
40854266--40854296	15	2.1	15	100	0	62	32	25	0	41	1.56
40855581--40855648	9	7.3	9	74	12	66	16	10	1	72	1.19
40855552--40855654	14	7.3	14	70	17	54	17	13	0	67	1.27
40855562--40855651	18	5.1	17	74	13	67	18	10	1	70	1.22
40858764--40858845	42	2.0	42	97	0	155	20	3	31	43	1.69
40862655--40862686	16	2.0	16	93	0	55	34	18	0	46	1.49
40862888--40863180	50	5.8	50	72	7	225	29	26	18	25	1.98
40862889--40863179	101	2.9	101	85	1	413	29	26	18	25	1.98
40867514--40867595	28	2.9	28	83	0	101	36	14	23	25	1.93
40869267--40869447	40	4.6	40	90	2	267	25	30	21	22	1.99
40876538--40876708	93	1.8	93	94	0	306	28	29	21	20	1.98
40876530--40876710	46	3.9	46	80	9	224	28	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40880075--40880255	40	4.6	40	88	2	258	25	29	21	23	1.99
40886098--40886155	27	2.1	27	81	6	64	41	18	22	17	1.90
40892929--40893042	56	2.0	56	96	0	210	30	12	17	39	1.86
40893018--40893216	100	2.0	99	90	2	310	37	5	13	44	1.67
40896257--40896281	12	2.1	12	100	0	50	84	0	0	16	0.63
40900656--40900680	12	2.1	12	100	0	50	84	0	0	16	0.63
40907077--40907163	37	2.3	36	94	5	147	26	33	19	20	1.97
40907232--40907399	49	3.4	49	96	1	300	30	25	8	35	1.86
40915321--40915374	21	2.6	21	80	11	65	20	35	11	33	1.88
40924502--40924540	6	6.5	6	84	0	51	17	2	2	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292