genome.fa.s9.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  125  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37333571--37333608	2	19.0	2	100	0	76	50	0	0	50	1.00
37333855--37333977	39	3.2	39	85	0	165	26	26	21	26	1.99
37336385--37336614	39	5.9	39	94	0	379	24	23	31	21	1.98
37339789--37339829	21	2.0	21	100	0	82	14	34	24	26	1.94
37342470--37342497	14	2.0	14	100	0	56	50	0	7	42	1.30
37348019--37348206	43	4.4	43	80	6	188	28	17	22	31	1.96
37348027--37348187	85	1.9	84	86	7	227	26	17	24	31	1.97
37353728--37353752	13	1.9	13	100	0	50	36	24	16	24	1.94
37355755--37355785	14	2.3	13	94	5	53	29	16	6	48	1.70
37357445--37357584	57	2.5	57	77	11	135	30	15	21	32	1.94
37360239--37360776	178	3.0	178	98	0	1040	30	8	16	44	1.77
37366216--37366249	16	2.2	16	89	5	52	70	0	26	2	1.01
37370845--37370941	44	2.2	44	82	8	110	42	2	1	54	1.19
37370897--37370921	13	1.9	13	100	0	50	44	0	0	56	0.99
37370904--37370956	26	2.1	24	83	13	63	50	0	1	47	1.12
37371377--37371414	17	2.1	17	90	9	58	52	5	2	39	1.38
37372700--37372743	22	2.0	22	87	12	65	22	15	9	52	1.71
37373876--37373918	7	6.0	7	86	2	59	25	4	11	58	1.52
37374519--37374562	18	2.4	18	88	0	61	18	27	9	45	1.79
37377717--37377866	49	3.0	49	78	3	165	27	24	21	26	1.99
37379847--37379900	25	2.2	25	96	0	99	46	12	22	18	1.83
37379842--37379975	31	4.5	31	79	9	104	47	15	19	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37379847--37379946	25	3.8	26	74	10	78	45	17	21	17	1.86
37380112--37380213	27	3.8	26	88	5	132	36	21	23	18	1.95
37380372--37380436	22	3.0	22	80	13	80	36	23	20	20	1.95
37380861--37381083	27	8.3	27	88	0	268	26	20	18	34	1.96
37380890--37381083	81	2.4	81	92	0	334	26	21	18	34	1.96
37380851--37381112	81	3.2	81	83	3	235	28	18	19	33	1.95
37381132--37381355	27	8.3	28	82	3	140	30	8	20	39	1.84
37381203--37381632	54	7.9	54	91	0	635	30	7	21	40	1.81
37381176--37381625	27	16.6	27	82	0	531	30	8	21	40	1.82
37383953--37383981	12	2.4	12	100	0	58	6	13	31	48	1.69
37384357--37384470	40	2.8	40	81	9	126	28	23	18	29	1.98
37384453--37384545	46	2.0	46	97	0	177	53	13	6	25	1.64
37384887--37384937	21	2.4	21	80	3	57	54	21	0	23	1.44
37385299--37385339	3	13.7	3	100	0	82	68	0	0	31	0.90
37388883--37390018	290	4.0	274	93	4	1812	36	12	11	39	1.79
37390310--37390377	24	2.8	24	89	8	111	27	20	7	44	1.78
37390699--37390933	9	25.6	9	76	8	152	48	13	0	37	1.48
37390695--37390828	27	5.0	27	87	1	171	48	14	0	36	1.49
37390751--37390957	105	2.0	105	84	3	274	47	12	0	38	1.48
37390845--37390904	17	3.4	17	76	4	66	50	10	1	38	1.46
37390803--37391007	105	2.0	102	80	6	234	47	13	0	38	1.49
37396581--37396631	21	2.4	21	80	0	66	29	19	49	1	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37397027--37397332	43	7.1	43	93	2	517	23	33	19	22	1.97
37397447--37397677	125	1.8	126	93	0	401	25	19	16	38	1.91
37397807--37397840	8	4.2	8	88	0	50	58	29	0	11	1.33
37398125--37398160	16	2.2	16	90	0	54	50	33	2	13	1.57
37398152--37398199	15	3.6	15	71	28	54	52	27	0	20	1.47
37398143--37398211	22	3.0	22	75	12	68	49	27	1	21	1.58
37397709--37398772	157	6.8	155	85	9	1355	43	19	1	35	1.62
37398468--37398761	142	2.1	142	92	2	484	42	19	2	36	1.62
37398506--37398806	142	2.1	139	85	6	392	42	19	2	34	1.64
37400933--37401054	64	1.9	64	98	0	235	33	18	13	34	1.90
37402439--37402614	46	3.8	46	79	5	203	20	21	29	28	1.98
37402435--37402606	93	1.8	93	90	2	274	20	21	30	27	1.98
37405810--37405841	16	1.9	17	93	6	57	3	15	0	81	0.82
37410076--37410134	9	6.6	9	86	7	75	44	18	10	27	1.82
37410077--37410143	27	2.5	28	78	9	59	43	19	8	28	1.81
37410163--37410203	6	6.5	6	89	10	64	14	0	4	80	0.87
37410161--37410200	20	2.0	20	95	0	71	15	0	7	77	0.98
37410228--37410252	13	1.9	13	100	0	50	12	0	48	40	1.40
37410229--37410266	18	2.1	18	95	0	67	7	2	47	42	1.46
37414563--37414594	15	2.0	17	88	11	50	31	6	0	62	1.20
37417793--37417860	32	2.1	32	94	0	118	30	16	10	42	1.81
37420275--37420314	16	2.5	16	100	0	80	12	7	5	75	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37427101--37427140	15	2.6	16	84	4	55	15	7	0	77	0.98
37428089--37428133	2	22.5	2	95	0	81	53	46	0	0	1.00
37428131--37428203	4	18.2	4	100	0	146	50	24	0	24	1.49
37435060--37435163	52	2.0	52	100	0	208	42	28	7	21	1.80
37435159--37435244	34	2.5	34	96	1	154	48	31	6	12	1.68
37441775--37441801	13	2.1	13	100	0	54	37	0	14	48	1.45
37447320--37447542	111	2.0	111	96	1	412	36	8	26	28	1.85
37450318--37450535	94	2.3	94	84	5	271	27	17	29	24	1.97
37450369--37450545	50	3.7	48	75	13	170	28	18	29	24	1.98
37451632--37451670	21	1.9	21	89	5	62	17	33	28	20	1.96
37455500--37455585	43	2.0	43	90	4	138	26	33	20	18	1.96
37455519--37455614	43	2.3	43	87	1	131	31	33	20	14	1.93
37457562--37457624	24	2.6	24	97	0	117	22	17	25	34	1.95
37460469--37460676	40	5.2	39	84	1	218	25	25	22	25	2.00
37460469--37460674	80	2.6	81	84	3	247	25	26	22	25	2.00
37468624--37468828	40	5.2	39	80	4	191	24	26	22	26	2.00
37468640--37468827	39	4.8	40	76	9	170	23	26	23	26	2.00
37468624--37468826	79	2.6	79	83	3	232	24	26	22	26	2.00
37475552--37475759	40	5.2	39	84	1	218	25	25	22	25	2.00
37475552--37475757	80	2.6	81	84	3	247	25	26	22	25	2.00
37484639--37484765	40	3.2	40	83	8	143	22	25	29	22	1.99
37494507--37494615	27	4.1	25	83	10	119	39	19	24	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37494507--37494615	54	2.0	53	85	1	146	39	19	24	16	1.91
37498929--37498968	21	1.9	21	84	0	53	30	10	25	35	1.88
37499474--37499569	28	3.5	28	86	1	122	25	11	34	29	1.91
37499499--37499591	28	3.3	28	86	1	78	29	11	32	26	1.92
37502391--37502433	22	2.0	21	82	13	52	20	20	6	51	1.71
37505152--37505214	15	4.2	15	75	0	63	50	15	17	15	1.78
37507303--37507382	37	2.1	38	82	15	96	41	23	10	25	1.85
37508749--37509330	27	21.6	27	85	2	733	27	22	9	41	1.84
37511490--37511665	46	3.8	46	80	12	225	21	21	28	28	1.98
37511487--37511657	93	1.8	93	96	0	315	21	21	29	28	1.98
37514619--37514698	15	5.4	15	77	7	83	10	18	13	57	1.64
37514610--37514697	30	3.0	30	80	11	92	10	18	15	55	1.68
37516611--37516786	46	3.8	46	80	12	225	21	21	28	28	1.98
37516608--37516778	93	1.8	93	96	0	315	21	21	29	28	1.98
37518086--37518138	20	2.7	20	96	0	97	35	13	18	32	1.90
37518191--37518357	24	7.0	23	87	6	228	29	22	21	26	1.99
37518191--37518357	47	3.5	47	88	4	230	29	22	21	26	1.99
37518191--37518356	71	2.3	71	91	3	262	28	22	21	26	1.99
37528523--37528562	21	1.9	21	89	0	62	32	10	22	35	1.87
37529075--37529167	28	3.3	28	86	0	87	24	12	34	27	1.92
37530821--37530952	29	4.6	29	85	1	97	25	31	16	25	1.96
37530820--37530952	58	2.3	59	81	5	146	25	31	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37533526--37533559	18	1.9	18	88	5	52	41	11	17	29	1.85
37534045--37534078	17	2.0	17	100	0	68	35	11	29	23	1.90
37539274--37539334	29	2.1	29	84	0	77	21	32	16	29	1.95
37539287--37539350	29	2.2	29	88	0	92	23	28	17	31	1.97
37541085--37541127	22	2.0	22	86	9	61	6	23	0	69	1.12
37541080--37541132	22	2.3	23	78	18	56	5	26	0	67	1.12
37542366--37542465	27	3.7	27	79	9	105	19	25	19	37	1.94
37544310--37544350	22	1.9	21	85	14	57	9	48	26	14	1.75
37545610--37545735	42	2.9	44	79	12	127	24	16	25	33	1.96
37545608--37545766	43	3.7	43	74	10	146	25	17	25	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292