genome.fa.s9.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  182  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54246572--54246624	19	2.8	18	76	18	63	16	15	16	50	1.78
54249261--54249378	37	3.2	37	84	4	157	23	13	47	15	1.81
54250179--54250210	15	2.1	15	94	0	55	28	6	0	65	1.16
54251119--54251308	105	1.8	105	88	2	292	25	20	18	35	1.96
54252160--54252284	62	2.0	62	85	0	169	23	4	16	56	1.59
54254913--54255112	90	2.2	90	75	5	206	30	15	20	34	1.93
54255552--54255659	28	3.9	28	81	7	121	30	12	21	35	1.91
54255550--54255673	28	4.4	27	77	11	108	29	14	21	33	1.93
54255546--54255672	56	2.3	56	80	2	157	29	14	21	33	1.93
54257463--54257487	2	12.5	2	100	0	50	52	0	0	48	1.00
54257761--54257830	27	2.5	28	81	6	81	38	1	1	58	1.16
54257761--54257830	28	2.5	28	79	6	72	38	1	1	58	1.16
54260490--54260619	40	3.2	40	82	4	165	23	28	24	23	2.00
54268493--54268659	40	4.2	40	80	5	169	23	27	23	25	2.00
54278052--54278090	19	2.2	19	86	9	55	10	15	0	74	1.07
54279393--54279437	20	2.3	20	88	3	65	28	17	26	26	1.98
54279466--54279518	28	1.9	27	88	3	79	28	16	26	28	1.97
54285247--54285277	3	10.3	3	100	0	62	32	0	67	0	0.91
54285436--54285536	43	2.4	43	85	5	134	42	10	7	38	1.69
54287122--54287146	9	2.8	9	100	0	50	32	0	36	32	1.58
54287264--54287317	20	2.9	18	77	20	58	53	5	1	38	1.35
54287233--54287377	68	2.1	70	82	7	170	55	4	3	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54290881--54290998	41	3.1	41	60	28	98	32	17	28	21	1.96
54290849--54291012	71	2.3	71	100	0	328	35	17	28	18	1.94
54297791--54297908	41	3.1	41	60	28	98	32	17	28	21	1.96
54297759--54297922	71	2.3	71	100	0	328	35	17	28	18	1.94
54305368--54305485	41	3.1	41	60	28	98	32	17	28	21	1.96
54305336--54305499	71	2.3	71	100	0	328	35	17	28	18	1.94
54307014--54307050	7	5.1	7	90	3	56	43	37	0	18	1.51
54310214--54310265	26	2.0	26	81	7	61	23	3	3	69	1.22
54310569--54310610	18	2.4	17	84	11	57	21	4	0	73	1.01
54310569--54310617	21	2.4	20	83	12	64	20	4	0	75	0.96
54310582--54310620	16	2.5	16	87	4	53	20	2	0	76	0.90
54310579--54310620	12	3.4	12	81	15	50	21	2	0	76	0.90
54312862--54312906	21	2.1	21	84	8	56	35	4	2	57	1.31
54315052--54315095	17	2.4	18	81	7	54	27	4	2	65	1.23
54315067--54315118	21	2.4	21	81	18	63	25	3	1	69	1.16
54315350--54315386	4	9.2	4	87	0	56	24	2	2	70	1.14
54315431--54315468	18	2.1	18	95	0	67	23	5	2	68	1.23
54315441--54315480	15	2.7	14	85	11	53	27	5	0	67	1.11
54315460--54315488	12	2.4	12	100	0	58	24	6	0	68	1.13
54316761--54316818	29	2.0	29	83	6	73	43	10	15	31	1.80
54318829--54318880	24	2.2	24	82	0	59	53	7	3	34	1.48
54320792--54320841	24	2.1	24	84	0	64	54	10	4	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54347263--54347398	64	2.1	64	80	4	148	33	21	21	23	1.97
54348310--54348448	27	5.2	27	88	7	162	35	23	23	17	1.96
54348310--54348448	54	2.6	54	88	3	192	35	23	23	17	1.96
54350066--54350175	26	4.2	26	97	0	184	36	24	5	33	1.79
54356307--54356369	32	2.0	32	83	0	81	30	25	15	28	1.96
54356490--54356536	23	2.0	23	87	0	67	23	25	23	27	2.00
54356727--54356817	27	3.4	27	89	0	137	24	20	18	36	1.95
54383825--54383873	20	2.5	20	96	3	91	55	6	6	32	1.49
54383825--54383873	10	5.0	10	80	5	64	55	6	6	32	1.49
54386231--54386301	26	2.7	25	82	4	70	71	4	21	2	1.15
54386235--54386306	13	5.5	13	69	12	58	69	4	23	2	1.19
54386240--54386311	26	2.8	26	84	0	90	68	4	25	2	1.21
54386276--54386328	16	3.4	16	92	2	81	64	5	28	1	1.27
54386532--54386586	27	2.0	27	96	0	101	45	1	7	45	1.41
54387523--54387575	21	2.5	21	82	14	65	47	1	1	49	1.23
54388177--54388213	19	2.0	19	89	5	58	56	2	0	40	1.13
54388691--54388730	21	1.9	21	85	10	55	42	5	7	45	1.54
54388827--54388868	16	2.6	16	81	7	50	35	2	2	59	1.23
54389510--54389551	2	21.0	2	100	0	84	50	0	0	50	1.00
54399517--54399706	39	4.9	39	92	1	310	21	31	22	24	1.98
54399517--54399707	77	2.4	78	92	1	321	21	31	22	24	1.98
54404388--54404557	40	4.2	40	85	3	225	21	28	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54411570--54411779	40	5.2	40	88	2	305	21	28	24	25	1.99
54415764--54415993	39	5.9	39	93	0	370	20	30	23	25	1.98
54436134--54436299	84	2.0	83	92	1	278	34	21	19	24	1.96
54442511--54442543	14	2.4	14	90	10	50	60	0	0	39	0.97
54443455--54443486	16	2.0	16	100	0	64	37	31	6	25	1.81
54446832--54446858	14	1.9	14	100	0	54	0	0	25	74	0.83
54453430--54453456	14	1.9	14	100	0	54	0	0	25	74	0.83
54454229--54454308	21	3.8	21	72	9	72	15	37	25	22	1.93
54454229--54454325	43	2.3	43	85	0	122	15	38	23	22	1.92
54457230--54457274	18	2.4	18	92	3	72	31	0	15	53	1.43
54457410--54457466	25	2.3	25	90	0	87	21	22	19	36	1.95
54457423--54457476	25	2.2	25	82	0	63	24	18	20	37	1.94
54461873--54462089	40	5.4	40	85	4	264	23	22	28	25	1.99
54470688--54470758	29	2.4	29	83	6	90	28	33	14	23	1.94
54471395--54471456	2	31.0	2	93	0	106	46	1	1	50	1.20
54473199--54473416	40	5.5	40	85	4	257	24	22	27	25	2.00
54476255--54476400	31	4.7	31	95	0	258	28	27	15	28	1.96
54476424--54476556	42	3.2	42	96	2	250	33	20	15	31	1.93
54476704--54476773	25	2.8	25	91	4	106	24	24	27	24	2.00
54477678--54477833	55	2.9	53	76	9	152	31	8	19	40	1.82
54477705--54477833	27	4.7	27	77	11	120	31	7	18	42	1.79
54477790--54477912	27	4.6	26	84	4	147	28	6	21	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54477764--54477912	80	1.9	81	87	4	221	28	6	20	43	1.77
54477760--54477954	80	2.4	80	77	9	209	29	9	20	40	1.85
54477944--54478149	27	7.3	27	78	10	198	38	7	23	30	1.83
54477773--54478006	107	2.2	107	77	5	231	31	8	21	38	1.83
54477987--54478056	35	2.0	35	86	5	97	35	7	20	37	1.80
54487350--54487405	25	2.2	26	84	9	80	25	23	19	32	1.98
54488455--54488591	64	2.1	64	91	0	220	26	28	21	24	1.99
54488980--54489065	34	2.6	33	85	8	106	43	19	3	33	1.68
54505886--54505933	23	2.1	23	100	0	96	50	8	8	33	1.63
54510697--54510736	5	8.4	5	83	10	57	42	0	0	57	0.98
54510704--54510740	8	4.8	8	81	18	51	40	0	0	59	0.97
54510698--54510740	13	3.5	13	78	18	56	41	0	0	58	0.98
54510692--54510740	18	2.8	17	84	9	62	44	0	0	55	0.99
54511226--54511275	3	16.7	3	100	0	100	66	0	0	34	0.92
54511274--54511320	3	15.7	3	100	0	94	34	0	0	65	0.93
54512234--54512314	21	3.8	21	78	1	99	16	17	23	43	1.88
54512588--54512665	40	2.0	40	82	5	95	29	21	20	28	1.98
54512677--54512825	75	2.0	75	90	0	235	32	16	20	30	1.95
54513171--54513209	14	2.8	14	88	0	60	25	0	25	48	1.51
54513171--54513238	28	2.4	29	82	7	77	26	0	25	48	1.51
54517428--54517565	39	3.5	38	77	7	118	22	21	28	27	1.99
54518498--54518574	21	3.6	21	87	5	109	20	0	36	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54518517--54518572	15	3.8	15	70	11	53	21	0	35	42	1.53
54518496--54518601	44	2.5	42	81	6	122	22	0	36	40	1.54
54518714--54518744	16	1.9	16	93	0	53	45	9	3	41	1.53
54518720--54518776	25	2.2	25	84	3	78	40	8	3	47	1.52
54518992--54519017	12	2.2	12	100	0	52	30	30	0	38	1.58
54519053--54519091	17	2.3	17	81	0	51	43	25	0	30	1.55
54519221--54519261	16	2.6	16	100	0	82	7	31	9	51	1.62
54520175--54520204	14	2.1	14	100	0	60	36	33	30	0	1.58
54521109--54521148	17	2.3	18	86	4	55	30	10	30	30	1.90
54528973--54529038	34	1.9	34	84	9	89	36	4	4	54	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292