genome.fa.s9.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  160  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47659195--47659245	25	2.0	25	81	7	59	33	13	31	21	1.92
47662498--47662836	48	7.0	48	89	6	529	36	6	25	31	1.81
47662498--47662836	100	3.5	98	93	2	567	36	6	25	31	1.81
47662498--47662833	148	2.3	149	90	4	533	36	6	25	31	1.81
47662983--47663091	37	2.9	37	90	0	173	23	18	30	27	1.98
47667050--47667103	28	1.9	28	92	0	90	51	18	5	24	1.67
47667242--47667606	194	1.9	194	94	0	649	32	9	18	39	1.83
47670495--47670658	71	2.3	71	96	0	301	34	17	28	19	1.95
47675340--47675873	47	11.4	47	93	0	836	27	30	8	33	1.87
47680236--47680286	24	2.2	24	89	3	77	37	3	7	50	1.50
47680252--47680298	24	2.0	24	83	8	60	40	6	10	42	1.65
47684513--47684876	94	3.9	95	79	7	363	22	28	20	28	1.98
47684515--47684775	47	5.6	46	70	12	156	22	27	19	30	1.98
47687266--47687322	24	2.4	24	90	0	87	40	5	7	47	1.53
47690746--47690931	40	4.7	40	88	5	227	26	26	21	25	1.99
47693619--47693672	23	2.2	25	87	6	76	57	0	3	38	1.17
47693619--47693679	24	2.5	24	78	5	70	60	0	3	36	1.13
47693609--47693673	25	2.5	26	75	12	71	56	0	3	40	1.15
47693640--47693685	24	2.0	24	82	4	58	60	0	2	36	1.09
47693798--47693846	18	2.7	18	77	0	62	30	2	0	67	1.02
47694388--47694464	24	3.2	23	70	17	59	48	1	5	45	1.33
47697602--47697659	30	1.9	30	85	0	80	18	17	6	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47697818--47697874	29	2.0	29	92	0	96	31	0	1	66	1.02
47697907--47698079	7	23.1	7	70	23	97	31	1	1	65	1.07
47697907--47698081	80	2.2	79	84	10	225	32	1	1	65	1.07
47698353--47698479	42	3.2	42	64	22	119	21	7	10	60	1.54
47698330--47698486	77	2.0	77	100	0	314	20	8	11	59	1.58
47698472--47698510	17	2.4	16	83	8	51	17	2	7	71	1.21
47698662--47698790	66	2.0	66	80	11	149	28	5	14	51	1.65
47702174--47702208	12	2.9	12	86	0	52	60	0	37	2	1.12
47704018--47704167	40	3.8	40	92	1	221	20	27	23	28	1.99
47704002--47704205	40	5.1	40	86	3	214	24	27	22	26	1.99
47713569--47714097	45	11.9	44	68	15	277	30	14	27	27	1.95
47713618--47714097	90	5.4	90	88	2	695	30	15	27	26	1.96
47715464--47715520	29	2.0	29	92	0	96	31	0	1	66	1.02
47715554--47715728	7	25.9	7	72	23	101	32	1	0	65	1.07
47715552--47715729	80	2.3	77	82	9	220	32	1	0	65	1.07
47715552--47715729	53	3.4	55	70	22	109	32	1	0	65	1.07
47723619--47723822	40	5.1	40	92	2	304	23	21	26	27	1.99
47723619--47723868	80	3.2	80	87	3	328	23	22	27	27	1.99
47723619--47723868	40	6.3	40	88	1	294	23	22	27	27	1.99
47724856--47724902	24	2.0	24	100	0	94	34	23	17	25	1.96
47735422--47735453	14	2.2	15	94	5	57	78	0	3	18	0.89
47739791--47739822	5	6.6	5	92	7	57	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47739792--47739822	9	3.3	9	95	4	53	80	0	0	19	0.71
47743114--47743241	63	2.0	63	100	0	256	22	18	17	40	1.91
47744814--47744865	26	2.0	26	81	11	61	65	3	21	9	1.38
47745045--47745089	21	2.0	24	83	12	60	37	8	0	53	1.32
47749111--47749193	43	1.9	43	82	4	105	24	20	2	53	1.58
47761192--47761295	36	2.9	36	88	0	127	30	13	24	31	1.93
47769627--47769665	2	19.5	2	100	0	78	51	0	0	48	1.00
47770039--47770081	23	1.9	22	85	4	59	27	4	6	60	1.43
47773722--47773766	19	2.3	20	85	7	58	26	17	6	48	1.72
47781818--47782152	43	7.6	43	72	11	194	30	17	22	29	1.97
47781946--47782120	93	1.8	95	84	4	237	32	18	22	26	1.97
47782034--47782244	41	5.0	40	72	10	145	33	19	21	25	1.97
47781857--47782202	181	1.9	181	89	0	530	32	18	21	26	1.96
47782043--47782267	88	2.6	85	78	5	220	32	20	20	27	1.97
47782744--47782780	19	1.9	19	88	0	56	62	8	27	2	1.37
47782964--47782988	5	5.0	5	100	0	50	20	0	0	80	0.72
47783007--47783039	16	2.1	16	88	11	50	87	3	9	0	0.63
47783761--47783843	25	3.2	26	77	13	89	26	2	4	66	1.24
47784250--47784274	2	12.5	2	100	0	50	48	0	0	52	1.00
47784353--47784395	23	1.9	22	85	4	59	27	4	6	60	1.43
47790544--47790602	21	2.8	21	84	0	91	16	23	40	18	1.91
47792564--47792734	93	1.8	93	93	2	299	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47792559--47792731	46	3.7	47	79	10	212	30	27	19	22	1.98
47793158--47793217	30	2.0	30	90	0	93	30	25	8	36	1.85
47798361--47798397	19	2.0	19	89	5	58	16	35	37	10	1.83
47802608--47802647	19	2.0	22	85	14	59	32	47	2	17	1.61
47802709--47802823	27	4.3	26	87	5	149	36	23	23	16	1.94
47802709--47802823	54	2.1	54	88	3	169	36	23	23	16	1.94
47804439--47804546	26	4.2	26	97	0	180	36	24	5	34	1.79
47823520--47823668	80	1.9	80	81	2	183	22	30	24	22	1.99
47823561--47823668	40	2.7	38	85	8	128	21	29	25	23	1.99
47836356--47836504	80	1.9	80	81	2	183	22	30	24	22	1.99
47836397--47836504	40	2.7	38	85	8	128	21	29	25	23	1.99
47843773--47843801	14	2.0	15	93	6	51	24	0	20	55	1.44
47845180--47845395	50	4.3	50	81	4	229	29	11	18	39	1.86
47845180--47845395	100	2.2	100	85	2	290	29	11	18	39	1.86
47852761--47852926	50	3.3	50	80	5	201	31	12	17	38	1.87
47868935--47868979	20	2.3	21	77	14	51	48	15	28	6	1.70
47874066--47874094	6	4.8	6	100	0	58	13	34	17	34	1.89
47876462--47876539	37	2.1	37	95	0	138	28	11	16	43	1.83
47881176--47881261	39	2.2	38	81	6	93	34	39	11	13	1.82
47885672--47885776	26	4.0	26	79	6	104	38	21	11	28	1.88
47885675--47885776	53	1.9	53	88	4	152	38	21	10	29	1.87
47886047--47886092	22	2.1	22	88	8	67	13	21	19	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47888055--47888262	40	5.2	40	83	7	235	25	21	25	26	1.99
47888062--47888243	79	2.3	81	83	6	228	24	20	26	27	1.99
47888093--47888276	79	2.3	77	81	10	210	27	21	25	26	1.99
47896246--47896453	40	5.2	40	83	7	244	25	22	26	25	2.00
47896246--47896434	79	2.4	81	83	7	242	24	22	26	26	2.00
47896250--47896457	79	2.6	79	80	11	228	25	22	26	25	2.00
47912713--47912743	13	2.4	13	100	0	62	22	16	0	61	1.34
47915417--47915466	6	8.3	6	91	8	68	64	0	4	32	1.12
47932306--47932489	40	4.6	40	77	4	138	22	24	29	22	1.99
47932307--47932494	79	2.4	81	78	5	186	22	23	30	23	1.99
47948989--47949056	8	7.4	9	75	16	52	72	2	4	20	1.16
47953409--47953517	56	2.0	53	82	12	132	36	18	16	28	1.92
47954712--47954878	40	4.2	40	78	6	160	25	22	27	24	2.00
47962719--47962885	40	4.2	40	78	6	160	25	22	27	24	2.00
47968042--47968188	48	3.1	48	86	0	204	26	19	25	28	1.98
47971500--47971758	27	9.6	27	83	4	281	41	22	8	27	1.82
47971500--47971758	134	1.9	135	84	5	346	41	22	8	27	1.82
47971450--47971849	27	14.9	27	78	9	205	39	19	10	31	1.84
47971450--47971871	54	7.9	54	77	5	273	39	19	9	30	1.85
47973238--47973344	43	2.5	43	90	0	169	28	20	25	25	1.99
47973673--47973706	17	2.0	17	100	0	68	52	11	5	29	1.61
47974972--47975123	41	3.7	41	88	0	214	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47977376--47977409	11	3.1	11	95	0	59	29	8	35	26	1.87
47978336--47978784	27	16.7	27	79	3	303	40	20	8	30	1.83
47979889--47980090	41	4.9	41	85	0	287	22	21	28	27	1.99
47980500--47980547	22	2.2	22	84	0	60	10	22	22	43	1.84
47997347--47997532	40	4.7	40	86	5	227	25	26	22	25	2.00
47999821--47999862	20	2.1	20	82	8	50	69	2	0	28	1.01
48001402--48001570	47	3.6	46	87	5	241	29	27	17	24	1.98
48002262--48003443	590	2.0	589	93	1	2003	33	12	24	29	1.92
48004517--48004687	40	4.3	39	77	10	159	28	21	26	23	1.99
48012533--48012633	39	2.5	40	85	1	132	30	22	24	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292