Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  224  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65539054--65539101
25
1.9
25
86
0
69
45
6
6
41
1.54
65545892--65545930
6
6.5
6
100
0
78
48
15
17
17
1.81
65546899--65546937
4
10.2
4
83
10
55
0
30
0
69
0.89
65546899--65546937
11
3.5
11
89
3
60
0
30
0
69
0.89
65546894--65546934
19
2.3
18
91
8
66
0
31
0
68
0.90
65555819--65555858
14
2.9
14
96
0
71
42
45
7
5
1.54
65556871--65556972
4
25.5
4
96
0
177
50
26
0
22
1.49
65559899--65559950
15
3.2
15
73
19
50
44
0
1
53
1.11
65559982--65560017
15
2.3
16
90
9
65
41
0
0
58
0.98
65560004--65560047
19
2.4
17
88
11
61
56
0
0
43
0.99
65561419--65561540
44
2.7
46
81
7
142
31
22
12
33
1.91
65561457--65561545
46
2.0
45
88
4
135
29
25
12
32
1.92
65564439--65564489
20
2.6
21
84
12
72
33
0
3
62
1.13
65564439--65564488
19
2.5
20
87
9
68
34
0
4
62
1.14
65566901--65566945
22
2.0
22
100
0
90
44
4
4
46
1.43
65569425--65569450
8
3.2
8
100
0
52
76
23
0
0
0.78
65571873--65572043
93
1.8
93
92
0
288
27
29
21
21
1.98
65571865--65572040
46
3.8
46
79
12
198
28
29
20
21
1.98
65574424--65574474
15
3.4
15
86
5
68
60
11
17
9
1.57
65574435--65574483
15
3.2
15
80
11
55
57
14
16
12
1.66
65577364--65577535
92
1.9
92
95
0
308
27
29
21
21
1.99
65577357--65577531
46
3.8
46
82
8
221
28
29
21
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65581601--65581672
24
3.0
24
81
2
81
40
16
20
22
1.91
65581634--65581693
24
2.5
24
83
0
66
30
21
26
21
1.99
65583411--65583459
25
1.9
26
87
4
73
75
20
2
2
1.00
65585019--65585051
2
17.0
2
93
6
59
48
0
0
51
1.00
65585895--65586542
131
4.9
132
79
4
555
29
19
17
33
1.95
65586065--65586544
263
1.8
263
80
5
576
27
19
17
35
1.95
65586734--65586764
14
2.2
14
100
0
62
51
29
0
19
1.47
65600800--65601971
132
8.9
132
92
0
1905
28
18
25
28
1.98
65602340--65602387
24
2.0
25
87
4
71
75
20
2
2
1.02
65604817--65605464
131
4.9
133
80
5
574
28
18
17
34
1.94
65604846--65605466
263
2.4
263
79
6
625
27
19
17
35
1.94
65609408--65609547
39
3.6
39
92
0
226
37
22
25
13
1.91
65609426--65609529
21
5.2
21
71
13
103
39
21
25
13
1.90
65611400--65611685
137
2.1
136
94
0
500
31
24
18
25
1.98
65613456--65613563
26
4.2
26
97
0
198
37
26
5
30
1.79
65615267--65615308
21
2.0
21
85
0
57
33
11
11
42
1.78
65626959--65627155
100
2.0
100
95
0
358
52
12
14
20
1.74
65628526--65628561
16
2.2
16
95
0
63
63
16
8
11
1.49
65629987--65630127
43
3.3
43
91
2
230
26
28
19
25
1.98
65630451--65630484
17
1.9
18
94
5
61
23
29
11
35
1.90
65634589--65634632
18
2.4
18
85
7
54
38
0
38
22
1.55
65634762--65634979
76
3.0
75
89
6
326
24
10
10
54
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65635164--65635288
7
17.6
7
70
9
58
39
36
0
23
1.61
65635164--65635270
42
2.5
42
79
10
101
38
37
0
23
1.61
65635237--65635286
15
3.4
15
72
10
50
42
38
0
20
1.52
65635236--65635305
28
2.5
28
86
6
88
44
35
0
20
1.52
65635245--65635348
7
14.7
7
68
8
50
48
30
0
20
1.56
65635345--65635403
7
8.1
7
74
7
55
25
49
3
22
1.65
65635349--65635412
22
2.9
22
92
0
110
23
46
3
26
1.67
65635395--65635635
115
2.1
114
99
0
473
38
18
4
37
1.73
65635606--65635710
43
2.5
43
84
4
124
37
38
0
24
1.56
65635644--65635716
21
3.5
20
76
12
69
38
36
0
24
1.56
65635789--65635856
14
4.6
14
71
16
57
45
23
1
29
1.62
65635702--65635833
25
5.4
25
69
16
75
43
26
1
28
1.64
65635819--65635871
7
7.7
7
78
4
54
50
24
0
24
1.49
65635764--65635856
45
2.0
46
95
2
170
44
24
2
29
1.66
65636028--65636289
42
6.4
41
91
2
402
16
23
23
36
1.94
65636028--65636289
83
3.2
83
91
1
422
16
23
23
36
1.94
65640559--65640699
51
2.9
47
76
18
135
33
5
4
56
1.42
65640571--65640626
26
2.3
25
79
17
64
32
5
1
60
1.29
65640560--65640634
25
2.9
27
75
15
79
33
5
1
60
1.28
65640560--65640661
51
2.0
49
85
12
136
32
5
1
59
1.32
65640570--65640755
24
7.5
23
70
19
78
32
6
4
56
1.46
65640691--65640755
23
2.8
24
86
6
80
29
9
4
56
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65640780--65640828
26
1.9
26
87
4
73
36
6
0
57
1.24
65641037--65641103
18
3.8
17
71
15
55
26
1
2
68
1.12
65641137--65641196
24
2.5
24
83
8
77
26
3
8
61
1.40
65644130--65644287
57
2.9
56
80
13
152
42
1
3
52
1.27
65644449--65644503
16
3.4
16
84
0
74
30
27
5
36
1.79
65649979--65650020
18
2.3
18
95
0
75
47
0
21
30
1.51
65651969--65651993
13
1.9
13
100
0
50
24
28
8
40
1.83
65651917--65652043
63
2.0
63
92
0
209
33
17
19
29
1.95
65651980--65652085
50
2.1
50
89
1
158
33
16
23
26
1.96
65652061--65652209
31
4.8
31
89
3
228
26
20
27
25
1.99
65652309--65652421
56
2.0
56
89
3
174
27
14
28
30
1.95
65652377--65652491
42
2.7
42
82
6
135
31
13
26
28
1.93
65655198--65655468
56
4.9
55
77
5
240
36
12
21
29
1.90
65655198--65655450
84
3.0
83
80
4
251
38
11
20
29
1.88
65655198--65655450
28
9.0
27
77
6
191
38
11
20
29
1.88
65655429--65655528
27
3.7
27
79
2
103
19
17
28
36
1.93
65658159--65658281
42
2.9
42
82
2
140
15
24
17
42
1.88
65662303--65662395
46
2.0
46
100
0
186
30
12
12
44
1.80
65663354--65663397
14
3.1
14
83
6
52
54
4
0
40
1.21
65664294--65665068
201
3.9
199
80
6
756
29
21
18
31
1.96
65664292--65665068
402
2.0
395
81
4
904
29
20
18
31
1.96
65664899--65665240
162
2.1
161
82
6
406
29
19
17
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65665044--65665528
201
2.4
201
79
2
492
30
21
18
29
1.97
65665997--65666208
98
2.2
100
90
2
340
23
29
19
26
1.98
65666170--65666290
33
3.7
33
76
12
115
23
28
22
24
1.99
65666163--65666290
66
1.9
66
84
3
168
25
28
21
25
1.99
65673389--65673421
2
16.5
2
100
0
66
48
0
0
51
1.00
65674778--65674817
17
2.4
17
87
8
55
35
2
2
60
1.24
65676754--65676842
27
3.3
27
83
0
124
16
29
25
28
1.97
65676909--65677096
105
1.8
102
83
10
247
29
1
17
51
1.54
65679541--65679582
5
8.4
5
84
10
59
76
0
23
0
0.79
65679539--65679582
15
2.9
16
83
10
65
75
0
25
0
0.81
65680000--65680043
23
2.0
23
86
4
63
47
11
9
31
1.71
65680638--65680676
17
2.3
17
86
0
51
58
2
2
35
1.25
65680666--65680697
14
2.3
14
94
0
55
40
0
9
50
1.35
65686259--65686328
28
2.5
28
85
0
86
31
12
27
28
1.93
65686268--65686336
28
2.5
28
85
0
93
36
11
26
26
1.90
65689043--65689076
16
2.1
16
88
0
50
38
14
23
23
1.92
65699912--65699975
31
2.0
32
91
8
105
31
3
12
53
1.54
65720487--65720539
26
2.0
28
85
7
74
0
11
20
67
1.21
65720497--65720551
26
2.2
26
80
9
60
1
14
20
63
1.39
65722203--65722235
2
16.5
2
100
0
66
51
0
0
48
1.00
65722803--65722844
22
1.9
22
85
0
57
42
23
21
11
1.86
65724260--65724303
2
22.0
2
90
0
70
50
4
0
45
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65724905--65724967
3
20.7
3
74
9
56
28
3
4
63
1.30
65725021--65725100
27
2.9
26
78
9
70
28
6
2
62
1.32
65729888--65729918
14
2.3
13
94
5
53
83
0
16
0
0.64
65729885--65729917
17
1.9
17
88
11
50
84
0
15
0
0.61
65730777--65730925
73
2.0
73
93
0
253
25
14
23
36
1.93
65730994--65731032
20
2.0
20
89
0
60
15
7
2
74
1.15
65730849--65731508
88
7.5
88
81
8
666
26
15
19
38
1.92
65730835--65731508
267
2.5
267
82
8
786
26
15
18
39
1.91
65731570--65731672
44
2.3
44
94
0
188
26
22
24
27
2.00
65733241--65733303
3
20.7
3
74
9
56
28
3
4
63
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292