genome.fa.s9.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  190  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56628381--56628414	13	2.7	13	86	4	52	58	0	5	35	1.22
56628381--56628455	25	3.0	25	78	9	73	65	0	4	30	1.11
56631593--56631743	40	3.8	40	77	11	132	26	23	26	23	2.00
56631633--56631759	40	3.2	40	77	4	132	24	24	28	22	2.00
56641176--56641581	46	8.8	46	92	1	591	39	14	24	21	1.91
56645321--56645364	22	2.0	22	86	0	61	52	2	4	40	1.34
56647167--56647217	25	2.0	25	92	0	84	31	23	19	25	1.98
56647257--56647296	10	3.9	10	93	6	71	32	17	20	30	1.95
56647256--56647296	21	2.0	21	100	0	82	34	17	19	29	1.94
56647342--56647411	25	2.8	25	97	0	131	25	27	22	24	2.00
56647342--56647436	50	1.9	50	82	8	122	27	25	23	24	2.00
56647632--56647698	31	2.2	31	97	0	125	38	14	25	20	1.91
56647632--56647714	31	2.7	31	90	3	116	36	15	25	22	1.94
56649899--56649931	6	5.5	6	100	0	66	30	0	36	33	1.58
56655109--56655159	25	2.0	25	92	0	84	31	23	19	25	1.98
56655199--56655238	10	3.9	10	93	6	71	32	17	20	30	1.95
56655198--56655238	21	2.0	21	100	0	82	34	17	19	29	1.94
56655524--56655593	31	2.3	31	92	0	113	38	14	22	24	1.91
56657223--56657267	3	15.0	3	100	0	90	33	0	0	66	0.92
56663428--56663453	2	13.0	2	100	0	52	50	0	0	50	1.00
56663558--56663641	40	2.1	40	82	8	100	14	26	20	39	1.90
56663595--56663670	20	3.8	20	71	11	66	10	27	19	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56663585--56663704	20	6.0	20	67	18	61	14	27	16	41	1.87
56663655--56663738	40	2.1	40	84	0	105	17	25	15	41	1.89
56663547--56663760	100	2.1	100	85	1	295	13	27	18	40	1.88
56667761--56667839	24	3.3	24	87	0	122	39	3	37	18	1.69
56670142--56670174	16	2.1	16	88	11	50	45	30	12	12	1.78
56675751--56675923	46	3.7	46	78	10	208	23	20	26	29	1.99
56675748--56675918	93	1.8	93	94	0	306	22	21	27	28	1.99
56682141--56682311	46	3.7	45	79	12	204	22	21	27	28	1.99
56684593--56684634	19	2.2	19	87	8	59	2	21	0	76	0.90
56688549--56688618	27	2.5	28	95	2	124	28	14	27	30	1.95
56688549--56688630	27	3.0	27	85	8	78	29	15	24	30	1.96
56696551--56696620	27	2.5	28	95	2	124	28	14	27	30	1.95
56696551--56696632	27	3.0	27	85	8	78	29	15	24	30	1.96
56699707--56699776	27	2.5	28	95	2	124	28	14	27	30	1.95
56699707--56699788	27	3.0	27	85	8	78	29	15	24	30	1.96
56707690--56707759	27	2.5	28	95	2	124	28	14	27	30	1.95
56707690--56707771	27	3.0	27	85	8	78	29	15	24	30	1.96
56713404--56713429	3	8.7	3	100	0	52	34	0	0	65	0.93
56719901--56719951	25	2.0	25	88	0	75	33	23	17	25	1.96
56719991--56720030	10	3.9	10	93	6	71	32	17	20	30	1.95
56719990--56720030	21	2.0	21	100	0	82	34	17	19	29	1.94
56720075--56720145	25	2.9	24	89	6	106	26	26	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56720075--56720172	25	4.0	23	83	9	79	28	24	21	25	1.99
56720076--56720170	50	1.9	50	80	8	113	28	24	22	25	1.99
56720366--56720447	31	2.7	31	83	3	114	36	15	21	25	1.94
56722315--56722630	49	6.6	48	78	8	240	22	27	19	30	1.98
56722462--56722633	46	3.7	46	73	10	154	21	27	20	30	1.98
56722316--56722593	94	2.9	95	85	4	319	22	27	19	30	1.98
56722315--56722633	94	3.4	93	80	8	306	22	27	19	30	1.98
56723282--56723332	20	2.7	19	82	14	61	37	19	0	43	1.51
56724473--56724516	21	2.1	21	91	0	70	29	6	22	40	1.80
56724741--56724777	17	2.2	18	85	9	51	48	16	8	27	1.74
56731020--56731058	20	2.1	19	85	9	53	2	28	17	51	1.59
56733522--56733561	17	2.4	17	95	0	71	32	10	30	27	1.89
56740748--56740815	34	2.0	34	86	11	95	32	20	23	23	1.98
56742443--56742505	21	3.2	21	63	28	57	28	22	1	47	1.60
56742431--56742505	37	2.0	37	97	0	141	29	21	1	48	1.59
56745521--56745648	43	3.0	43	79	4	150	25	17	28	28	1.97
56753057--56753253	38	5.1	38	87	3	261	34	25	20	20	1.97
56755968--56756020	26	2.0	26	82	13	65	58	9	0	32	1.30
56757836--56757967	43	3.1	43	81	12	180	25	15	26	32	1.96
56774645--56774768	39	3.2	39	94	0	221	29	25	16	27	1.97
56774604--56774768	78	2.1	78	87	0	231	30	25	18	25	1.98
56779512--56779635	39	3.2	39	91	0	212	30	25	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56779471--56779635	78	2.1	78	88	0	240	31	25	17	25	1.97
56780152--56780196	5	7.7	6	81	18	51	13	0	0	86	0.57
56780152--56780182	11	2.8	11	100	0	62	16	0	0	83	0.64
56790016--56790093	29	2.8	28	94	3	138	38	3	25	32	1.74
56790556--56790673	41	3.1	41	60	28	98	32	17	28	21	1.96
56790524--56790687	71	2.3	71	100	0	328	35	17	28	18	1.94
56797011--56797128	41	3.1	41	60	28	98	32	17	28	21	1.96
56796979--56797142	71	2.3	71	100	0	328	35	17	28	18	1.94
56819079--56819134	22	2.5	23	72	16	55	30	17	14	37	1.90
56832594--56832692	28	3.5	29	82	6	114	28	15	26	30	1.96
56840251--56840349	28	3.5	29	82	6	114	28	15	26	30	1.96
56847285--56847323	17	2.3	17	95	0	69	58	12	7	20	1.58
56848089--56848125	18	2.1	18	94	0	65	35	18	24	21	1.96
56863835--56863937	30	3.4	30	100	0	206	19	36	30	13	1.90
56865094--56865145	27	1.9	27	92	0	86	40	26	9	23	1.85
56869605--56869683	6	13.3	6	81	2	88	17	3	3	74	1.12
56873451--56873514	7	8.7	7	74	17	51	26	1	3	68	1.13
56873464--56873514	18	2.8	19	88	8	72	23	1	3	70	1.14
56873649--56873677	15	1.9	15	100	0	58	13	17	13	55	1.70
56876508--56876568	6	10.8	5	85	13	59	16	3	4	75	1.11
56887871--56887904	15	2.3	15	90	10	52	23	5	2	67	1.26
56892722--56892759	20	2.0	20	94	5	69	0	28	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56892720--56892752	16	2.0	17	88	5	50	0	30	0	69	0.88
56898748--56898788	6	6.5	6	89	10	64	80	2	0	17	0.82
56898725--56898782	20	2.6	22	81	15	66	72	3	0	24	1.00
56898807--56898856	18	2.8	18	81	0	73	28	6	16	50	1.68
56898807--56898856	9	5.6	9	85	0	64	28	6	16	50	1.68
56900181--56900218	20	2.0	20	94	5	69	0	26	2	71	1.00
56900280--56900323	19	2.3	19	84	0	52	38	2	0	59	1.10
56903791--56903843	27	2.0	27	100	0	106	18	30	32	18	1.96
56905059--56905117	26	2.2	27	78	3	66	25	1	1	71	1.05
56926175--56926320	40	3.7	40	77	5	125	26	26	23	23	2.00
56928431--56928469	15	2.5	16	91	4	62	69	0	15	15	1.20
56928444--56928477	16	2.1	16	88	0	50	73	2	8	14	1.19
56928871--56928905	17	2.1	16	89	5	52	22	0	2	74	0.95
56928872--56928937	24	2.8	23	78	13	71	19	1	4	74	1.07
56941034--56941071	8	4.3	9	84	15	53	78	2	0	18	0.86
56941261--56941320	25	2.4	25	80	2	66	43	30	11	15	1.82
56942623--56942683	28	2.1	29	82	8	72	34	14	0	50	1.43
56953081--56953523	126	3.5	126	67	11	366	28	17	18	34	1.94
56956950--56956984	12	2.9	12	91	0	61	57	14	20	8	1.63
56965288--56965893	177	3.4	176	86	3	761	30	17	25	26	1.97
56965551--56965896	44	7.8	44	68	12	145	30	15	25	27	1.96
56965506--56965801	88	3.4	88	70	11	253	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56966628--56966660	6	5.3	6	96	3	57	15	0	3	81	0.80
56967774--56967798	2	12.5	2	100	0	50	48	0	0	52	1.00
56969316--56969388	37	2.0	37	88	0	110	31	9	4	54	1.51
56971931--56971956	7	3.7	7	100	0	52	57	26	0	15	1.38
56972175--56972432	89	2.9	89	84	2	320	38	18	18	24	1.93
56972189--56972483	45	6.6	45	74	9	210	38	18	19	24	1.93
56972176--56972484	90	3.4	89	79	8	288	38	17	18	24	1.92
56972176--56972508	45	7.4	45	70	12	179	38	17	18	24	1.92
56973064--56973285	28	7.9	28	75	10	141	55	7	14	22	1.64
56973065--56973230	57	2.9	56	77	12	178	56	6	15	22	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292