genome.fa.s9.2.7.7.80.10.50.1000.240.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  240  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69700086--69700213	64	2.0	64	93	0	220	29	16	16	37	1.91
69700281--69700867	83	7.0	83	90	3	872	37	22	21	17	1.94
69700281--69700867	167	3.5	167	91	2	892	37	22	21	17	1.94
69700280--69700832	250	2.2	250	91	1	894	37	23	21	17	1.94
69702983--69703294	126	2.5	127	85	6	400	26	14	20	38	1.91
69708415--69708444	6	5.0	6	95	0	51	16	46	0	36	1.47
69710359--69710409	25	2.1	24	82	7	59	33	5	0	60	1.21
69715130--69715205	40	1.9	40	89	5	118	28	27	17	26	1.97
69722430--69722505	40	1.9	40	86	5	109	30	27	15	26	1.96
69725181--69725254	6	12.5	6	75	13	55	78	1	16	4	0.97
69725181--69725254	11	6.2	12	74	12	55	78	1	16	4	0.97
69727832--69727963	40	3.3	39	77	11	117	37	23	20	18	1.94
69728006--69728113	38	2.8	38	80	8	128	31	22	20	25	1.98
69728162--69728304	7	20.4	7	72	10	51	19	0	31	48	1.54
69728167--69728282	14	8.3	14	73	9	67	18	0	30	50	1.52
69728186--69728247	21	3.0	21	73	0	70	20	1	25	51	1.57
69728252--69728299	21	2.3	21	85	3	62	14	0	41	43	1.45
69728661--69728710	22	2.3	21	86	10	66	22	0	30	48	1.51
69729168--69729581	114	3.6	115	82	7	470	23	12	24	39	1.90
69729484--69729678	97	2.0	97	82	5	239	17	12	25	43	1.85
69729767--69729879	57	2.0	58	89	1	174	23	37	3	35	1.73
69732424--69732459	18	1.9	19	88	5	56	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69732715--69732790	22	3.7	21	76	15	68	40	17	6	35	1.75
69732744--69732841	35	2.7	37	87	12	150	35	16	10	37	1.82
69732751--69732841	19	4.9	19	92	8	161	36	15	10	37	1.83
69734027--69734073	10	5.0	9	80	15	51	40	8	0	51	1.33
69734439--69734469	9	3.4	9	90	0	53	51	19	0	29	1.47
69734472--69734557	13	6.3	13	74	21	70	52	13	0	33	1.41
69734447--69734656	56	3.8	56	93	2	368	50	16	0	33	1.49
69734541--69734680	56	3.0	44	74	23	140	47	17	0	34	1.54
69734586--69734610	13	1.9	13	100	0	50	48	8	4	40	1.51
69734658--69734730	9	8.1	9	70	11	51	42	21	4	31	1.72
69734638--69734706	36	1.9	36	93	0	120	46	17	1	34	1.57
69734927--69734967	15	2.7	15	92	0	64	26	14	4	53	1.61
69739843--69739871	14	2.1	14	93	6	51	34	0	10	55	1.34
69740558--69740623	31	2.1	31	88	0	96	16	12	21	50	1.77
69740758--69740865	42	2.6	42	93	0	189	28	35	16	19	1.94
69754129--69754213	23	3.6	23	69	10	64	58	2	9	29	1.42
69754159--69754240	33	2.3	38	83	12	102	52	0	13	34	1.41
69754225--69754266	19	2.3	18	87	4	57	69	2	2	26	1.13
69754499--69754554	22	2.5	22	88	5	87	12	0	51	35	1.40
69754510--69754567	13	4.8	13	77	16	61	10	0	51	37	1.36
69755065--69755942	206	4.3	206	96	0	1623	27	23	19	29	1.98
69757420--69757546	45	2.9	45	81	8	138	23	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69757876--69758006	41	3.1	43	90	4	189	29	33	24	12	1.92
69764249--69764289	21	2.0	21	100	0	82	9	19	26	43	1.82
69772897--69772981	23	3.6	23	69	10	64	58	2	9	29	1.42
69772927--69773008	33	2.3	38	83	12	102	52	0	13	34	1.41
69773285--69773324	13	3.4	13	74	25	52	5	0	55	40	1.22
69773269--69773326	22	2.6	22	91	0	89	10	0	55	34	1.34
69774438--69774464	5	5.4	5	100	0	54	37	0	0	62	0.95
69775033--69775094	29	2.1	29	84	0	79	43	3	11	41	1.56
69776592--69776621	15	2.0	15	100	0	60	26	20	20	33	1.97
69788977--69789032	27	2.1	27	100	0	112	37	17	14	30	1.90
69796585--69796616	3	10.7	3	93	0	55	0	31	0	68	0.90
69798014--69798039	11	2.4	11	100	0	52	69	0	0	30	0.89
69802436--69802533	49	2.0	51	85	4	137	36	13	21	28	1.91
69811496--69811539	17	2.5	17	81	7	52	61	4	6	27	1.41
69812142--69812178	17	2.1	19	85	10	51	62	0	13	24	1.31
69821532--69821564	17	2.0	17	94	5	59	36	15	0	48	1.45
69821973--69822048	25	3.2	25	66	21	72	19	21	15	43	1.88
69821995--69822103	54	2.0	54	94	0	191	22	24	12	39	1.90
69821843--69822124	46	6.0	46	85	7	332	21	23	14	40	1.90
69830939--69830975	18	2.0	19	89	5	58	51	10	5	32	1.60
69836964--69837000	2	19.0	2	91	5	58	51	2	0	45	1.15
69837809--69837835	11	2.5	11	100	0	54	0	7	0	92	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69838798--69838875	39	2.0	39	97	0	147	37	10	21	30	1.87
69846458--69846521	24	2.5	25	80	7	67	29	4	4	60	1.37
69850068--69850175	26	4.2	26	85	4	155	35	24	8	32	1.85
69850068--69850175	52	2.1	52	91	0	171	35	24	8	32	1.85
69857069--69857177	26	4.2	26	88	4	166	34	22	8	33	1.84
69868257--69868471	3	71.7	3	69	12	102	63	3	7	26	1.36
69868276--69868344	35	1.9	36	85	8	97	65	4	7	23	1.36
69868317--69868468	45	3.4	44	74	13	116	64	3	6	25	1.33
69868635--69868664	16	1.9	15	93	6	51	73	6	3	16	1.18
69868712--69868752	21	1.9	22	85	14	59	51	0	19	29	1.47
69869818--69869859	22	2.0	22	85	4	59	14	7	40	38	1.73
69869879--69869964	31	2.8	31	90	0	127	16	1	37	45	1.55
69870528--69870732	75	2.7	76	81	4	245	33	20	17	28	1.95
69870732--69870923	64	3.0	64	88	0	258	32	22	19	25	1.97
69883006--69883278	3	91.7	3	72	10	186	62	2	6	28	1.34
69883456--69883485	16	1.9	15	93	6	51	73	6	3	16	1.18
69884696--69884789	31	3.0	31	93	0	152	13	1	39	45	1.51
69884729--69884783	17	3.4	17	75	14	71	10	0	41	47	1.39
69886710--69886762	25	2.1	25	82	0	61	49	5	26	18	1.70
69887120--69887151	5	6.4	5	100	0	64	40	18	0	40	1.51
69887487--69887556	35	2.0	35	97	0	131	35	10	2	51	1.50
69893028--69893059	16	2.1	16	88	11	50	21	0	18	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69894176--69894242	25	2.7	25	77	17	77	31	2	7	58	1.41
69895783--69895969	99	1.9	99	93	0	320	21	20	15	42	1.89
69896440--69896496	30	1.9	30	100	0	114	35	15	10	38	1.82
69898402--69898432	16	1.9	16	93	0	53	41	12	16	29	1.85
69901230--69901270	21	2.0	21	85	0	55	29	24	26	19	1.98
69903192--69903222	16	1.9	16	93	0	53	41	12	16	29	1.85
69906028--69906295	46	5.8	46	88	1	342	41	14	23	21	1.89
69907230--69907269	19	2.0	22	85	14	59	32	47	2	17	1.61
69907330--69907498	27	6.3	26	89	3	203	36	22	23	17	1.95
69907330--69907498	81	2.1	81	87	2	241	36	22	23	17	1.95
69907599--69907672	26	2.8	27	85	8	98	33	10	21	33	1.88
69909116--69909222	26	4.1	26	93	0	178	36	25	5	32	1.79
69911959--69912033	37	2.0	37	100	0	150	37	9	21	32	1.85
69915528--69915583	22	2.5	22	75	11	69	53	0	10	35	1.36
69916219--69916268	26	2.0	24	88	7	73	64	6	0	30	1.18
69916239--69916297	21	2.8	21	78	12	59	69	8	0	22	1.15
69916344--69916376	15	2.1	16	88	11	50	69	0	0	30	0.88
69918229--69918490	141	1.9	141	96	0	488	36	17	19	26	1.94
69929397--69929555	42	3.7	43	80	7	162	24	16	27	31	1.97
69938718--69938790	19	3.7	19	77	5	74	60	2	1	35	1.20
69938718--69938790	20	3.7	20	76	10	69	60	2	1	35	1.20
69952149--69952174	10	2.6	10	100	0	52	42	57	0	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69955698--69955827	25	5.2	25	80	2	122	20	25	20	33	1.97
69956759--69956787	14	2.1	14	100	0	58	41	0	6	51	1.28
69959772--69959824	20	2.8	17	80	11	52	37	3	1	56	1.28
69960167--69960236	30	2.4	28	81	11	79	30	5	1	62	1.27
69960177--69960230	14	3.7	15	76	16	51	29	5	0	64	1.16
69960324--69960353	15	2.0	15	100	0	60	33	13	0	53	1.40
69960713--69960947	43	5.4	43	89	0	344	28	28	19	24	1.98
69963753--69963868	58	2.0	58	96	0	214	37	20	11	30	1.88
69966467--69966515	25	2.0	26	84	8	66	24	16	20	38	1.92
69968002--69968136	26	5.2	26	92	1	218	36	24	5	34	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292