genome.fa.s9.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  101  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30980798--30980933	61	2.3	58	87	7	197	48	12	17	21	1.80
30980774--30980911	6	22.8	6	72	15	106	50	12	15	21	1.77
30981054--30981127	27	2.8	27	71	20	66	39	22	22	14	1.91
30981438--30981520	27	3.1	26	87	5	112	37	21	21	19	1.94
30981735--30981887	81	1.9	81	88	0	234	26	18	18	35	1.94
30981719--30981880	27	6.0	27	86	0	198	25	20	19	35	1.96
30981900--30982247	27	12.9	27	83	4	425	40	9	21	27	1.85
30985040--30985078	20	2.1	19	85	9	53	5	25	17	51	1.66
30988947--30989068	54	2.2	55	82	4	140	16	31	27	25	1.96
30993645--30993812	30	5.7	30	79	5	189	20	27	11	39	1.88
30993603--30993833	89	2.6	89	89	0	347	21	25	13	39	1.90
31002134--31002203	6	11.3	6	81	14	72	2	17	1	78	0.94
31002135--31002189	8	6.2	9	73	26	55	3	18	0	78	0.90
31002126--31002203	36	2.1	37	86	6	106	2	19	1	76	0.96
31010284--31010522	50	4.8	48	77	11	216	30	25	18	25	1.98
31011529--31011610	40	2.0	40	100	0	164	40	9	12	37	1.76
31013558--31013586	15	1.9	15	100	0	58	13	20	31	34	1.92
31018991--31019052	31	2.0	31	83	3	79	37	20	22	19	1.95
31019767--31019918	81	1.9	81	92	0	259	26	20	17	36	1.94
31019747--31019919	27	6.4	27	81	2	204	26	21	17	34	1.95
31027146--31027316	27	6.3	27	86	0	216	25	19	18	36	1.95
31031286--31031419	41	3.3	41	75	8	130	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31031643--31031695	27	2.0	27	92	0	88	39	18	0	41	1.51
31037649--31037898	27	9.3	27	85	0	302	28	22	8	40	1.84
31037660--31037988	27	12.2	27	80	1	84	31	22	8	37	1.84
31037649--31037898	54	4.6	54	91	0	383	28	22	8	40	1.84
31037649--31037899	81	3.1	81	85	4	362	28	22	8	40	1.84
31037892--31038045	27	5.7	27	83	0	209	39	20	7	31	1.81
31037885--31038045	81	2.0	81	87	0	232	39	20	8	32	1.82
31037892--31038042	54	2.8	54	92	0	248	40	21	7	31	1.80
31041590--31041840	27	9.3	27	83	8	251	28	22	8	40	1.84
31041609--31041929	27	11.9	27	80	1	86	32	22	8	37	1.84
31041590--31041840	81	3.1	81	83	4	353	28	22	8	40	1.84
31041590--31041839	54	4.6	54	90	0	383	28	22	8	40	1.84
31041833--31041986	27	5.7	27	83	0	209	39	20	7	31	1.81
31041826--31041986	81	2.0	81	87	0	232	39	20	8	32	1.82
31041833--31041983	54	2.8	54	92	0	248	40	21	7	31	1.80
31046480--31046642	39	4.2	39	92	0	254	22	20	32	24	1.98
31054462--31054624	39	4.2	39	92	0	254	22	20	32	24	1.98
31056879--31056910	13	2.3	15	89	10	50	25	34	3	37	1.72
31059390--31059562	46	3.7	46	79	10	190	22	20	27	30	1.98
31059389--31059557	93	1.8	93	90	0	275	22	20	27	29	1.98
31060881--31060924	20	2.2	20	91	0	70	25	38	25	11	1.89
31065128--31065312	40	4.6	39	85	4	217	28	22	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31065127--31065333	80	2.6	80	83	4	247	26	22	26	25	2.00
31065126--31065333	40	5.2	39	83	5	211	26	22	25	25	2.00
31068329--31068387	30	2.0	30	83	6	75	42	3	22	32	1.70
31068824--31068907	43	2.0	43	85	0	114	21	17	28	32	1.96
31070421--31070552	29	4.6	29	91	0	201	25	32	15	26	1.95
31074245--31074282	2	19.0	2	100	0	76	50	0	0	50	1.00
31082186--31082324	40	3.5	40	85	0	197	23	30	13	32	1.93
31092672--31092741	27	2.6	27	97	2	131	31	27	12	28	1.93
31095515--31095606	42	2.2	42	92	0	148	34	21	14	29	1.93
31095751--31095873	26	4.8	26	90	1	187	27	22	23	26	2.00
31095751--31095873	52	2.4	51	95	2	221	27	22	23	26	2.00
31096626--31096705	27	3.0	27	85	3	81	21	23	21	33	1.97
31096658--31096717	27	2.2	27	88	5	86	18	25	18	38	1.93
31096748--31097027	27	10.3	27	73	6	163	31	9	20	39	1.84
31096768--31097027	54	4.8	54	76	7	195	31	9	19	39	1.83
31096834--31097025	81	2.4	81	81	4	235	29	7	21	41	1.80
31096887--31097054	81	2.1	81	79	2	176	32	7	21	38	1.82
31096979--31097126	54	2.7	54	71	8	122	35	7	20	36	1.81
31097004--31097081	27	2.9	27	90	0	120	39	6	21	32	1.79
31099490--31099527	20	1.9	20	88	0	58	34	2	10	52	1.50
31101156--31101224	28	2.5	28	95	2	122	43	27	10	18	1.82
31107498--31107535	20	1.9	20	88	0	58	34	2	10	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31109154--31109218	25	2.5	26	87	9	89	44	26	9	20	1.81
31115744--31115813	27	2.5	28	86	2	97	32	25	14	27	1.94
31117526--31117555	12	2.5	12	94	0	51	26	36	26	10	1.88
31119897--31120038	40	3.5	40	83	1	124	27	23	26	22	1.99
31119936--31120064	40	3.2	39	84	6	152	24	22	27	25	2.00
31122667--31122738	30	2.4	30	92	0	126	18	33	30	18	1.94
31123341--31123370	15	2.0	15	93	0	51	16	6	50	26	1.70
31126450--31126503	27	2.0	27	85	0	72	40	7	12	38	1.72
31126753--31126991	100	2.4	98	85	2	316	25	18	26	29	1.98
31126751--31126990	49	4.8	50	83	2	295	24	18	27	29	1.98
31134947--31135200	126	2.0	126	95	0	454	38	16	11	33	1.85
31136832--31137014	39	4.6	39	86	2	224	22	29	22	25	1.99
31141856--31141991	26	5.2	26	96	0	227	36	23	5	34	1.77
31145062--31145147	30	2.9	30	84	6	120	25	16	19	38	1.92
31149575--31149736	41	4.0	41	83	4	193	36	17	26	19	1.94
31159561--31159855	41	7.2	41	71	5	184	37	15	25	21	1.93
31159610--31159849	81	3.0	82	75	7	213	38	15	24	22	1.92
31162636--31162930	47	6.3	47	92	0	455	27	28	8	35	1.86
31169346--31169704	49	7.3	49	90	5	514	30	8	31	29	1.87
31174272--31174298	2	13.5	2	100	0	54	48	0	0	51	1.00
31181744--31181770	2	13.5	2	100	0	54	48	0	0	51	1.00
31183841--31183901	30	2.0	30	83	0	77	39	6	24	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31184612--31184819	67	3.2	63	76	11	188	31	16	28	22	1.96
31188749--31188812	29	2.1	29	85	5	83	35	17	15	31	1.91
31190186--31190416	62	3.7	62	80	2	214	23	25	25	25	2.00
31197269--31197436	62	2.7	61	79	5	158	18	25	27	28	1.98
31201868--31202109	126	1.9	126	94	0	430	38	16	17	28	1.91
31202210--31202275	13	5.1	13	78	7	55	66	1	3	28	1.15
31202390--31202539	43	3.5	43	88	0	219	30	23	22	24	1.99
31207073--31207122	9	5.6	9	87	0	73	30	0	24	46	1.53
31207065--31207122	27	2.1	27	90	0	89	31	1	20	46	1.61
31207121--31207795	241	2.8	241	95	0	1235	33	14	17	33	1.91
31207820--31207886	33	2.0	33	85	0	89	44	14	22	17	1.86
31210568--31210632	25	2.6	25	85	0	94	29	15	43	12	1.83
31212626--31212663	18	2.1	18	90	5	58	47	2	42	7	1.46
31212871--31212927	22	2.7	20	77	22	62	33	1	1	63	1.15
31213286--31213335	14	3.6	14	83	5	57	40	46	0	14	1.44
31213275--31213363	21	4.2	20	78	8	70	40	42	0	16	1.49
31213354--31213407	14	3.8	14	85	4	63	51	25	0	22	1.48
31213691--31213743	24	2.3	23	90	6	81	41	3	1	52	1.30
31214347--31214525	41	4.4	41	89	2	236	20	24	20	34	1.96
31214892--31214925	11	3.0	11	91	4	50	67	0	0	32	0.91
31214894--31214925	16	2.1	15	94	5	55	68	0	0	31	0.90
31215313--31215385	18	4.0	18	70	16	60	17	0	54	27	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31215327--31215401	37	2.0	37	100	0	150	16	0	54	29	1.42
31215368--31215424	29	2.0	29	89	0	87	19	0	45	35	1.50
31217379--31217440	31	2.0	31	100	0	124	41	6	16	35	1.74
31219436--31219472	18	2.1	18	100	0	74	48	21	29	0	1.50
31225173--31225210	16	2.4	15	87	12	58	34	0	0	65	0.93
31226298--31226334	6	6.5	6	81	12	51	83	2	0	13	0.74
31226292--31226332	16	2.6	16	96	0	73	82	2	0	14	0.76
31227378--31227439	24	2.6	24	89	0	88	33	25	3	37	1.72
31229519--31229571	26	2.0	26	100	0	106	30	7	22	39	1.82
31238553--31238704	40	3.8	40	82	3	171	28	22	26	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292