genome.fa.s9.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  116  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35248059--35248107	27	1.9	25	84	12	64	79	2	16	2	0.92
35248180--35248204	12	2.1	12	100	0	50	76	0	16	8	1.02
35248174--35248229	18	3.1	18	76	5	51	69	5	19	5	1.28
35248180--35248261	30	2.7	31	81	5	105	64	2	21	10	1.37
35249362--35249409	14	3.4	14	85	0	60	43	6	31	18	1.75
35253630--35253726	30	3.2	30	76	2	106	27	27	16	27	1.97
35254847--35254872	8	3.2	8	100	0	52	23	38	0	38	1.55
35255584--35255681	30	3.3	30	75	0	88	29	17	25	27	1.97
35257423--35257460	20	1.9	20	89	10	60	42	10	10	36	1.74
35258711--35258915	7	28.9	7	73	12	96	45	33	0	20	1.56
35258755--35258920	22	7.8	21	75	9	95	45	31	0	21	1.56
35258712--35258822	43	2.6	42	77	7	107	45	32	0	21	1.52
35258826--35258859	15	2.3	15	94	0	59	44	38	0	17	1.49
35259223--35259325	38	2.6	40	76	8	104	33	21	15	30	1.94
35263513--35263671	41	3.8	41	68	19	105	20	12	22	44	1.85
35264971--35265055	43	2.0	43	86	4	118	24	15	29	30	1.95
35269776--35269925	67	2.2	67	83	8	180	33	17	28	21	1.96
35272178--35272223	20	2.3	20	81	3	58	28	19	26	26	1.99
35273140--35273172	18	1.9	17	88	11	50	42	12	15	30	1.83
35280615--35280660	20	2.3	21	81	11	60	17	21	21	39	1.93
35280624--35280669	20	2.3	20	85	7	58	17	19	19	43	1.88
35281225--35281321	30	3.2	31	75	5	101	28	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35282162--35282209	15	3.3	15	73	5	53	29	0	27	43	1.55
35282156--35282215	29	2.1	29	90	0	93	30	0	28	41	1.56
35283719--35283745	10	2.7	10	100	0	54	18	11	29	40	1.85
35285826--35285899	21	3.6	21	67	22	50	6	20	2	70	1.23
35288019--35288054	17	2.0	18	89	10	56	11	5	5	77	1.10
35288032--35288079	13	3.8	13	83	2	62	12	4	4	79	1.02
35293996--35294169	46	3.8	46	79	13	207	20	21	28	28	1.98
35297482--35297527	20	2.3	21	81	11	60	17	21	21	39	1.93
35297491--35297536	20	2.3	20	85	7	58	17	19	19	43	1.88
35298092--35298188	30	3.2	30	72	8	81	27	27	14	29	1.95
35298558--35298720	76	2.1	76	100	0	326	33	11	28	26	1.91
35301534--35301567	11	3.0	11	86	4	50	85	2	8	2	0.80
35305594--35305652	29	2.0	29	84	12	77	55	16	6	20	1.63
35315236--35315271	13	2.8	13	100	0	72	11	8	5	75	1.19
35317239--35317278	19	2.1	19	85	0	53	25	35	17	22	1.95
35317091--35320099	779	3.9	779	98	0	5777	28	19	19	32	1.96
35318797--35318836	19	2.1	19	85	0	53	25	35	17	22	1.95
35319576--35319615	19	2.1	19	85	0	53	25	35	17	22	1.95
35321237--35321286	10	4.6	11	83	11	68	76	8	2	14	1.10
35325627--35325666	14	2.9	14	88	0	53	50	7	32	10	1.64
35328960--35328988	14	2.1	14	100	0	58	6	44	6	41	1.58
35329490--35329522	15	2.1	16	88	5	50	21	0	12	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35332338--35332364	10	2.7	10	100	0	54	40	29	11	18	1.85
35339338--35339372	14	2.5	14	90	0	52	11	28	8	51	1.67
35345674--35345713	22	1.9	20	85	10	53	22	20	17	40	1.92
35346154--35346257	52	2.0	53	92	1	174	25	28	17	28	1.97
35346479--35346533	26	2.2	25	81	9	67	40	14	9	36	1.78
35355719--35355755	18	2.1	18	100	0	74	27	0	10	62	1.28
35357057--35357108	23	2.3	23	84	15	65	21	7	3	67	1.32
35360357--35360514	68	2.3	68	97	0	298	24	30	14	31	1.95
35367872--35368065	67	2.8	68	89	6	259	22	29	14	32	1.94
35367921--35368065	67	2.1	68	97	1	274	24	29	13	31	1.94
35367921--35368083	67	2.4	67	91	5	231	25	28	14	32	1.94
35370766--35370819	27	2.0	27	85	3	74	35	20	22	22	1.96
35370820--35371073	27	9.4	27	85	0	301	25	20	18	35	1.95
35370820--35371073	54	4.7	54	90	0	355	25	20	18	35	1.95
35372975--35373021	10	4.7	10	86	5	60	74	6	4	14	1.17
35378189--35378227	18	2.1	18	85	4	51	25	35	15	23	1.94
35380980--35381076	30	3.2	30	73	2	88	29	27	13	28	1.94
35382783--35382826	11	3.7	12	85	14	56	75	6	6	11	1.20
35382782--35382827	13	3.7	13	83	16	62	76	6	6	10	1.16
35382807--35382843	17	2.2	17	90	9	58	78	5	8	8	1.09
35383754--35383810	11	5.5	10	73	22	55	78	0	17	3	0.88
35383754--35383810	5	11.0	5	75	20	55	78	0	17	3	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35383879--35383903	12	2.1	12	100	0	50	76	0	16	8	1.02
35383873--35383928	18	3.1	18	76	5	51	69	3	19	7	1.27
35383879--35383960	30	2.7	31	81	5	105	64	1	21	12	1.33
35386056--35386152	30	3.2	30	72	2	88	30	27	12	28	1.93
35387640--35387884	27	9.1	27	81	1	269	32	17	22	27	1.96
35387640--35387884	80	3.0	80	87	0	337	32	17	22	27	1.96
35387646--35387884	53	4.5	54	82	1	293	33	17	22	27	1.96
35388255--35388346	33	2.9	32	74	21	95	28	25	22	23	2.00
35389861--35389898	18	2.1	19	85	5	51	26	2	10	60	1.43
35391833--35391929	30	3.2	30	74	0	86	29	26	13	29	1.94
35395306--35395402	30	3.2	30	73	2	88	28	26	15	28	1.96
35396990--35397141	27	5.7	27	89	0	198	41	21	7	30	1.80
35396984--35397141	54	2.9	54	88	2	221	40	20	7	31	1.81
35396990--35397213	81	2.8	80	78	7	213	39	21	8	30	1.83
35396990--35397213	54	4.2	54	79	4	220	39	21	8	30	1.83
35397125--35397199	27	2.8	27	87	4	107	38	24	10	26	1.88
35397191--35397618	27	15.9	27	86	4	447	27	22	8	41	1.83
35397164--35397411	81	3.1	81	83	4	216	28	24	8	38	1.85
35397595--35397735	27	5.1	27	72	13	108	40	20	8	30	1.82
35397688--35397743	27	2.1	26	83	9	69	37	10	12	39	1.78
35397797--35397861	27	2.4	27	82	5	78	36	18	24	20	1.94
35399020--35399067	25	1.9	25	86	0	69	33	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35399111--35399169	20	3.0	20	92	0	100	35	11	20	32	1.89
35399220--35399386	24	7.0	24	91	3	248	28	22	22	26	1.99
35399220--35399387	71	2.3	71	89	4	248	29	22	22	26	1.99
35399578--35399678	31	2.8	37	75	21	115	39	15	21	22	1.92
35399574--35399655	31	2.6	31	96	0	146	41	14	19	24	1.89
35402420--35402515	48	2.0	48	93	0	165	33	19	14	32	1.92
35406759--35406924	43	3.9	43	80	10	155	25	19	30	24	1.98
35406857--35407003	40	3.6	41	75	5	118	28	19	28	23	1.98
35406813--35407003	43	4.6	41	76	7	163	27	18	29	24	1.98
35409025--35409049	8	3.1	8	100	0	50	88	0	0	12	0.53
35410666--35410829	38	4.3	38	85	3	202	30	23	21	24	1.99
35410898--35410941	23	1.9	23	85	0	61	36	6	11	45	1.67
35413258--35413405	48	3.1	48	92	0	242	37	8	24	29	1.84
35414268--35414329	31	2.0	31	100	0	124	38	16	12	32	1.86
35414702--35414778	38	2.0	40	92	5	131	27	27	24	20	1.99
35415054--35415144	43	2.1	44	87	6	132	25	29	18	26	1.98
35422601--35422697	30	3.2	30	73	2	88	29	27	13	28	1.94
35425277--35425333	11	5.5	10	73	22	55	77	1	17	3	1.00
35425266--35425333	21	3.2	20	80	12	66	76	2	17	2	1.04
35425277--35425333	5	11.0	5	77	17	55	77	1	17	3	1.00
35425277--35425333	16	3.7	14	80	17	60	77	1	17	3	1.00
35425381--35425411	12	2.6	12	100	0	62	45	12	16	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35425414--35425438	12	2.1	12	100	0	50	76	0	16	8	1.02
35425408--35425463	18	3.1	18	76	5	51	69	3	19	7	1.27
35425414--35425495	30	2.7	31	81	5	105	64	1	21	12	1.33
35427538--35427594	20	2.8	21	74	12	57	28	26	15	29	1.96
35427599--35427695	30	3.2	30	73	2	88	29	27	13	28	1.94
35440214--35440331	39	3.0	39	74	0	119	40	25	6	27	1.80
35440796--35440829	11	3.1	11	95	0	59	55	23	0	20	1.43
35453736--35454000	132	2.0	132	100	0	530	34	11	21	33	1.89
35455709--35455940	27	8.7	26	84	7	270	38	20	8	32	1.83
35455729--35456000	80	3.4	80	83	5	248	37	20	9	33	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292