genome.fa.s9.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  39  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10653019--10653075	24	2.3	24	84	3	69	45	1	3	49	1.29
10654729--10654777	21	2.3	21	86	10	64	30	53	4	12	1.57
10654970--10655022	26	2.0	26	85	7	72	28	11	22	37	1.89
10656507--10656693	26	7.2	26	91	4	272	35	24	6	33	1.81
10665006--10665059	23	2.3	23	100	0	108	38	3	14	42	1.64
10665006--10665070	23	2.8	23	90	0	67	41	3	15	40	1.63
10670023--10670048	12	2.2	12	100	0	52	65	0	7	26	1.20
10688445--10688533	41	2.2	41	89	0	133	20	11	29	39	1.87
10690753--10690799	22	2.1	22	84	0	58	57	12	17	12	1.65
10691500--10691638	24	5.4	26	72	19	96	60	4	4	30	1.35
10691549--10691603	27	2.0	27	82	10	67	60	5	0	34	1.20
10691477--10691666	102	1.9	97	89	7	292	61	4	3	31	1.30
10691627--10691668	21	2.0	22	86	13	61	61	4	0	33	1.17
10693217--10693267	20	2.6	19	85	11	68	54	1	9	33	1.44
10698489--10698710	40	5.6	40	78	5	218	25	25	22	26	2.00
10698526--10698710	80	2.3	81	84	4	241	24	24	23	27	2.00
10701609--10701730	43	2.9	42	80	7	156	27	23	14	33	1.94
10707681--10707735	20	2.8	19	78	8	58	32	3	1	61	1.24
10719317--10719342	10	2.6	10	100	0	52	0	7	0	92	0.39
10722622--10722675	27	2.0	27	96	0	99	29	31	11	27	1.91
10723459--10723527	13	5.2	13	80	3	84	33	21	0	44	1.53
10723459--10723527	27	2.6	26	86	4	102	33	21	0	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10725398--10725453	26	2.2	26	96	0	103	35	25	10	28	1.89
10727786--10727869	44	1.9	44	90	0	132	27	26	3	42	1.71
10731178--10731221	13	3.4	12	81	12	52	31	18	2	47	1.61
10736022--10736401	49	7.7	49	94	0	571	31	8	30	29	1.87
10736450--10736536	37	2.3	36	94	5	147	20	19	33	26	1.97
10738395--10738611	40	5.5	39	81	6	204	23	21	29	26	1.99
10742452--10742812	49	7.4	49	95	0	569	31	8	29	30	1.87
10742881--10742967	37	2.3	36	94	5	147	20	19	33	26	1.97
10747403--10747440	20	1.9	20	88	0	58	34	2	10	52	1.50
10752561--10752668	26	4.2	26	93	0	189	32	7	24	36	1.83
10754100--10754132	9	3.7	9	95	0	57	39	12	18	30	1.87
10754100--10754145	9	5.0	9	89	2	56	39	15	15	30	1.88
10754508--10754555	24	2.0	24	95	0	87	27	45	4	22	1.70
10758860--10759133	137	2.0	136	94	0	485	26	18	23	31	1.97
10761358--10761624	46	5.8	46	90	0	363	38	14	24	21	1.91
10766597--10766811	50	4.3	50	81	4	236	28	12	20	39	1.88
10766597--10766811	100	2.2	100	85	2	288	28	12	20	39	1.88
10772175--10772243	28	2.5	28	92	2	113	20	10	26	43	1.83
10778003--10778183	40	4.6	39	78	8	170	23	27	24	24	2.00
10785946--10786092	78	1.9	80	84	5	201	23	27	23	25	2.00
10785911--10786092	40	4.6	39	79	6	179	23	27	24	24	2.00
10794294--10794366	26	2.8	26	68	15	69	32	15	9	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10803564--10803630	18	3.7	18	73	15	66	40	4	16	38	1.69
10814548--10814594	12	4.0	11	81	15	51	78	4	0	17	0.90
10814512--10814611	19	5.1	19	76	10	69	74	5	2	19	1.11
10817340--10817392	17	3.1	17	94	2	88	13	30	37	18	1.89
10817452--10817531	27	3.0	27	83	10	101	37	16	15	31	1.89
10817514--10817662	27	5.6	27	79	7	142	40	21	8	29	1.82
10817565--10817881	27	11.7	26	76	9	183	39	20	10	29	1.86
10817514--10817825	27	11.6	27	77	9	126	40	20	9	29	1.85
10818300--10818364	22	3.0	22	80	8	78	20	26	23	30	1.98
10818566--10818613	22	2.2	22	88	0	69	10	14	25	50	1.74
10823846--10823937	42	2.2	42	92	0	148	34	21	14	29	1.93
10824085--10824154	25	2.8	25	89	4	97	22	25	28	22	1.99
10825075--10825173	27	3.6	27	76	12	92	35	10	16	38	1.82
10825139--10825235	27	3.6	26	75	10	81	26	8	21	43	1.81
10825267--10825358	27	3.4	27	85	5	132	41	7	22	28	1.81
10825267--10825372	54	2.0	54	86	3	151	38	7	21	32	1.82
10828674--10828894	40	5.6	41	84	8	289	24	22	26	26	2.00
10829122--10829163	22	1.9	22	85	9	59	33	9	14	42	1.78
10830793--10830967	46	3.8	46	78	10	185	30	29	18	21	1.97
10830801--10830972	93	1.8	93	91	0	281	29	29	19	21	1.97
10830844--10830987	46	3.1	44	68	21	98	30	28	18	22	1.97
10833347--10833434	30	3.0	30	80	9	101	57	15	15	10	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10833347--10833425	15	5.4	15	80	8	92	59	13	16	10	1.60
10836373--10836544	93	1.8	93	94	0	308	27	30	21	20	1.98
10836365--10836540	46	3.8	46	81	10	214	28	29	21	21	1.98
10838508--10838571	27	2.4	27	81	5	76	21	25	17	35	1.95
10838625--10838680	27	2.1	26	86	3	76	39	12	10	37	1.78
10838689--10838785	27	3.6	26	74	13	74	26	7	21	44	1.78
10838817--10838908	27	3.4	27	83	5	123	39	8	23	28	1.84
10838808--10838935	54	2.4	54	77	6	127	35	10	22	31	1.88
10840169--10840278	45	2.4	45	81	3	132	22	16	18	42	1.88
10845628--10845656	2	15.0	2	92	7	51	51	0	0	48	1.00
10849166--10849292	45	2.9	45	81	10	131	25	28	20	25	1.99
10849628--10849756	43	3.0	43	89	2	190	31	29	26	13	1.94
10849728--10850003	38	7.3	38	94	0	480	32	26	21	19	1.97
10857428--10857545	31	3.5	35	89	9	135	22	23	16	37	1.94
10857451--10857545	31	3.1	31	98	0	181	23	22	15	38	1.92
10857737--10857879	24	6.0	24	90	4	200	27	22	20	29	1.99
10857737--10857878	47	3.0	47	89	5	196	27	22	21	28	1.99
10857736--10857879	71	2.0	72	87	4	211	27	22	20	29	1.98
10857930--10857989	20	3.0	20	90	0	102	33	20	11	35	1.88
10858032--10858079	25	1.9	25	86	0	69	25	16	25	33	1.96
10859227--10859291	27	2.4	27	82	5	78	21	24	18	35	1.96
10859350--10859547	27	7.3	27	72	11	100	33	8	20	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10859499--10859970	27	17.5	27	85	1	498	41	7	23	27	1.81
10860162--10860226	27	2.4	27	82	5	78	21	24	20	33	1.97
10860285--10860563	27	10.3	27	80	6	125	37	8	18	34	1.82
10859068--10860937	935	2.0	935	98	0	3625	36	12	20	31	1.89
10860434--10860913	27	17.8	26	84	5	467	41	7	23	27	1.82
10860434--10860903	81	5.8	80	91	2	692	41	7	22	27	1.82
10860892--10861008	27	4.3	27	78	4	103	31	10	18	39	1.85
10860890--10861006	54	2.2	53	80	13	132	30	11	19	38	1.87
10860918--10861023	27	3.9	27	74	9	74	34	9	17	37	1.83
10863380--10863497	31	3.5	35	87	9	126	22	23	16	37	1.93
10863403--10863497	31	3.1	31	95	0	172	24	22	14	38	1.91
10863689--10863808	24	5.0	24	90	3	170	26	22	22	28	1.99
10863859--10863918	20	3.0	20	90	0	102	33	20	11	35	1.88
10865155--10865219	27	2.4	27	84	5	87	20	24	20	35	1.96
10865278--10865528	27	9.3	27	79	6	123	36	7	19	36	1.80
10865426--10865906	27	17.8	27	85	0	523	40	6	24	28	1.80
10865427--10865896	81	5.8	81	90	3	687	40	6	23	28	1.80
10865903--10866001	27	3.7	27	79	5	103	31	10	19	39	1.85
10865911--10866016	27	3.9	27	74	9	74	34	9	17	37	1.83
10867910--10868293	183	2.1	184	84	6	519	33	10	7	47	1.68
10869592--10869708	62	1.9	61	86	5	166	50	5	2	41	1.38
10870661--10870699	19	2.1	19	85	0	51	23	28	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10874361--10874394	18	1.9	18	88	5	52	29	17	11	41	1.85
10875507--10875585	29	2.8	29	80	1	79	30	31	13	24	1.94
10880011--10880082	28	2.5	29	88	6	112	29	26	13	30	1.94
10887816--10887886	28	2.5	29	93	6	119	28	25	15	30	1.96
10904457--10904513	23	2.6	23	83	5	64	52	1	0	45	1.11
10907762--10907808	23	2.0	23	100	0	94	8	29	12	48	1.71
10919145--10919210	17	3.5	17	67	25	51	40	13	9	36	1.76
10919147--10919229	41	2.0	41	100	0	166	38	16	9	34	1.82
10919766--10919807	15	2.8	15	85	7	50	33	4	14	47	1.65
10921944--10921995	24	2.2	24	89	0	77	55	9	1	32	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292