genome.fa.s9.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  217  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63770717--63770789	38	1.9	38	86	5	103	24	6	16	52	1.68
63771483--63771520	18	2.1	18	90	0	58	28	18	18	34	1.95
63773201--63773257	30	1.9	29	89	3	87	66	1	3	28	1.18
63774844--63775395	3	183.3	3	72	9	295	60	2	6	30	1.34
63775171--63775276	40	2.8	38	78	16	112	68	0	5	24	1.17
63775193--63775286	34	3.0	30	77	18	93	68	1	6	24	1.20
63775324--63775392	32	2.2	32	83	0	84	63	2	2	30	1.23
63776029--63776062	5	6.8	5	96	0	50	82	0	5	11	0.83
63776753--63777006	44	5.6	44	72	10	181	27	20	19	32	1.97
63776748--63776876	41	3.1	41	76	8	125	24	18	20	35	1.95
63776985--63777391	68	6.0	68	88	0	589	27	22	24	25	2.00
63777409--63777560	44	3.5	42	70	8	117	19	25	21	33	1.97
63777403--63777753	87	4.0	86	85	2	434	21	25	21	31	1.98
63777811--63778010	66	3.1	66	93	3	334	34	13	19	33	1.90
63783068--63783251	3	61.3	3	72	10	90	60	0	9	29	1.32
63783216--63783270	21	2.4	22	82	11	58	56	3	12	27	1.53
63783457--63783941	3	162.3	3	71	10	246	62	2	7	28	1.34
63783716--63783943	40	5.7	38	72	16	135	65	3	5	25	1.29
63783794--63783874	43	1.9	43	82	7	103	67	3	7	20	1.31
63784160--63784204	23	2.0	23	86	0	63	73	4	0	22	1.01
63788310--63788345	13	2.7	13	86	4	54	25	2	0	72	0.98
63788441--63788490	19	2.7	18	81	9	55	30	0	4	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63788686--63788731	24	1.9	24	82	8	58	50	2	2	45	1.26
63788674--63788738	17	3.8	16	80	13	60	49	3	1	46	1.27
63788956--63788990	17	2.1	17	94	0	61	42	2	0	54	1.15
63788956--63789008	24	2.2	25	86	10	74	37	3	1	56	1.28
63789174--63789226	16	3.2	16	79	10	52	41	1	7	49	1.42
63788713--63789370	248	2.7	246	82	8	673	38	9	7	44	1.65
63789591--63789643	20	2.5	20	87	6	70	60	0	1	37	1.08
63790140--63790205	19	3.5	19	74	11	64	31	1	1	65	1.11
63804922--63804976	23	2.4	24	87	6	78	7	14	14	63	1.50
63808376--63808407	12	2.8	11	90	9	55	9	12	0	78	0.97
63809531--63809582	5	9.6	5	80	15	59	76	0	1	21	0.87
63813407--63813736	132	2.5	131	83	3	387	28	20	19	31	1.97
63813516--63813893	131	2.9	131	75	6	282	26	19	18	35	1.95
63817409--63817559	42	3.5	41	75	9	133	27	18	24	29	1.98
63817403--63817515	44	2.7	41	77	11	120	24	17	25	31	1.97
63817403--63817559	43	3.7	41	75	9	136	26	17	24	31	1.97
63819170--63819202	17	2.0	17	88	5	50	60	3	24	12	1.46
63829398--63829436	19	2.0	20	95	5	71	17	0	10	71	1.12
63829398--63829462	19	2.9	23	84	13	66	24	0	9	66	1.21
63829836--63829862	13	2.1	13	100	0	54	25	22	22	29	1.99
63838361--63838411	23	2.2	23	86	6	68	11	27	13	47	1.78
63842570--63842615	21	2.2	21	100	0	92	19	19	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63846500--63846532	17	1.9	17	88	11	50	36	0	9	54	1.32
63857068--63857107	5	8.0	5	100	0	80	40	0	0	60	0.97
63858181--63858205	12	2.1	12	100	0	50	16	24	20	40	1.91
63858228--63858258	6	5.2	6	92	0	53	16	19	16	48	1.81
63858493--63858529	2	18.5	2	94	0	65	48	0	2	48	1.15
63859064--63859111	15	3.0	15	82	11	60	70	0	0	29	0.87
63859060--63859107	3	17.3	3	75	16	50	72	0	0	27	0.84
63860447--63860482	17	2.1	17	89	0	54	72	0	0	27	0.85
63861122--63861170	24	2.0	24	100	0	98	34	12	20	32	1.90
63861784--63861893	44	2.5	44	84	3	139	35	13	21	29	1.92
63863847--63863886	19	2.1	19	86	9	55	32	0	2	65	1.06
63883050--63883173	32	3.9	32	95	0	221	44	16	14	25	1.85
63887765--63887805	21	2.0	21	85	9	57	41	0	7	51	1.30
63893936--63894066	26	5.0	26	93	0	217	36	23	6	32	1.82
63901316--63901504	87	2.2	88	89	0	281	30	8	16	44	1.77
63909973--63910031	31	1.9	31	86	6	84	38	1	5	54	1.33
63912120--63912153	2	17.0	2	93	0	59	52	0	0	47	1.00
63912272--63912302	2	15.5	2	93	0	53	48	0	3	48	1.17
63915669--63915747	33	2.4	34	80	2	97	40	13	25	20	1.89
63917244--63917416	46	3.7	46	77	13	192	30	28	19	20	1.97
63917251--63917423	93	1.9	93	92	0	292	30	28	20	20	1.98
63920336--63920375	2	20.0	2	85	10	55	47	5	0	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63920783--63920874	3	31.0	3	94	2	159	66	0	0	33	0.92
63921352--63921386	15	2.3	16	90	9	56	42	0	57	0	0.99
63925067--63925113	21	2.2	21	88	0	76	55	10	21	12	1.67
63925307--63925346	21	2.0	21	85	5	55	47	7	25	20	1.75
63927398--63927555	85	1.9	84	82	6	203	44	0	3	51	1.22
63927506--63927539	9	3.9	9	88	3	52	61	0	0	38	0.96
63928182--63928232	26	2.0	26	88	0	75	43	1	5	49	1.38
63928618--63928650	2	16.5	2	100	0	66	51	0	0	48	1.00
63930705--63930814	26	4.2	26	97	0	184	33	5	24	36	1.79
63932427--63932538	27	4.1	27	88	1	161	18	24	22	34	1.96
63932621--63932660	19	2.0	22	85	14	59	17	2	47	32	1.61
63933809--63934118	46	7.0	46	86	8	417	22	23	15	39	1.92
63934031--63934106	38	2.0	38	100	0	152	21	26	18	34	1.96
63936254--63936305	11	4.7	11	76	9	52	63	3	0	32	1.12
63938233--63938273	4	10.2	4	100	0	82	24	0	24	51	1.49
63941239--63941314	30	2.5	30	80	4	82	34	18	15	31	1.92
63944248--63944357	26	4.2	26	90	0	184	36	24	5	33	1.79
63949150--63949204	12	4.6	12	100	0	110	14	50	25	9	1.72
63949463--63949511	20	2.3	21	83	13	57	26	12	2	59	1.44
63961882--63962282	71	5.5	71	76	10	317	30	16	22	30	1.96
63961881--63962213	151	2.3	146	90	5	510	30	17	22	30	1.96
63962185--63962651	219	2.1	218	98	0	898	24	14	19	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63963389--63963422	14	2.4	14	100	0	68	29	55	8	5	1.54
63963994--63964036	23	1.9	23	85	4	61	0	44	0	55	0.99
63964471--63964531	3	20.0	3	83	3	77	31	1	6	60	1.32
63964715--63964773	29	2.1	29	82	14	72	25	10	1	62	1.36
63964737--63964787	21	2.3	22	83	12	61	25	11	1	60	1.41
63967712--63967821	26	4.2	26	90	0	184	36	24	5	33	1.79
63970329--63970446	22	5.2	22	72	13	87	26	23	16	33	1.96
63970334--63970487	69	2.2	69	81	2	184	25	22	16	35	1.95
63973060--63973085	10	2.6	10	100	0	52	19	42	7	30	1.79
63974363--63974406	21	2.0	22	83	12	56	36	4	4	54	1.41
63975617--63975662	24	1.9	24	90	0	74	47	4	4	43	1.42
63976036--63976092	17	3.2	19	68	27	61	36	1	7	54	1.38
63976048--63976102	17	3.2	17	68	27	53	36	3	3	56	1.34
63976032--63976103	34	2.1	34	100	0	144	33	2	5	58	1.36
63976223--63976267	2	22.5	2	100	0	90	48	0	0	51	1.00
63980366--63980428	31	2.0	31	96	0	117	34	7	3	53	1.46
63989866--63989958	3	32.0	3	92	6	147	31	2	0	66	1.03
63990225--63990263	20	2.0	20	85	10	53	15	10	0	74	1.07
63994657--63994722	21	3.2	20	77	14	71	37	4	0	57	1.19
63998177--63998201	6	4.2	6	100	0	50	0	36	16	48	1.46
64000294--64000339	19	2.4	19	86	13	60	47	10	21	19	1.80
64002974--64003008	3	11.7	3	100	0	70	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64005228--64005256	14	2.0	15	93	6	51	89	0	10	0	0.48
64006215--64006260	19	2.3	20	85	7	67	30	10	10	47	1.73
64007228--64007398	93	1.9	91	81	4	209	37	7	8	46	1.62
64012108--64012146	2	19.5	2	94	0	69	48	0	2	48	1.15
64013382--64013958	88	7.0	83	71	15	290	36	18	16	27	1.93
64013551--64013611	30	2.0	30	90	6	97	42	27	9	19	1.83
64013707--64013741	14	2.6	14	90	4	54	51	5	14	28	1.65
64013759--64014097	72	4.5	72	80	8	358	33	18	17	30	1.95
64013955--64014434	165	2.9	168	88	5	695	31	20	18	30	1.96
64014130--64014274	74	1.9	75	88	5	222	28	22	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292