genome.fa.s9.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  118  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35682697--35682722	2	13.0	2	100	0	52	50	0	0	50	1.00
35683932--35683995	32	2.0	32	93	0	110	26	10	26	35	1.90
35685381--35685420	21	1.9	21	94	0	71	50	15	7	27	1.70
35685521--35685644	62	2.0	62	100	0	248	43	12	12	30	1.81
35687093--35687123	16	1.9	16	93	0	53	61	16	0	22	1.34
35688907--35688973	26	2.4	29	79	18	72	26	7	13	52	1.67
35689424--35689453	10	3.0	10	100	0	60	30	20	10	40	1.85
35690872--35691043	46	3.7	46	77	13	199	29	27	20	22	1.98
35690877--35691047	93	1.8	93	93	0	297	29	28	20	21	1.98
35693110--35693296	71	2.7	68	93	5	281	18	28	18	34	1.95
35693133--35693296	71	2.3	71	100	0	328	18	28	17	35	1.94
35693133--35693330	71	2.8	70	92	3	276	20	28	17	33	1.95
35700732--35700798	26	2.4	29	79	18	72	26	7	13	52	1.67
35704321--35704406	46	1.9	46	85	4	122	29	27	18	24	1.98
35708808--35708844	8	4.6	8	89	0	56	21	2	0	75	0.92
35709207--35709297	47	1.9	48	86	2	130	21	6	15	56	1.62
35710597--35710699	37	2.8	37	96	0	188	24	32	20	23	1.98
35710840--35711033	48	4.0	48	96	0	352	30	28	6	34	1.82
35714592--35714688	29	3.4	29	75	11	92	30	28	15	24	1.96
35714563--35714720	56	2.8	57	86	1	210	31	28	17	22	1.96
35714561--35714716	28	5.6	27	72	10	107	31	28	17	23	1.97
35714748--35715076	40	8.3	40	95	2	574	25	28	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35716362--35716464	37	2.8	37	96	0	188	24	32	20	23	1.98
35716605--35716796	48	4.0	48	95	2	343	31	29	5	33	1.81
35724277--35724374	46	2.0	49	82	9	121	35	14	8	41	1.75
35727982--35728038	3	19.0	3	100	0	114	0	33	0	66	0.92
35732867--35732970	23	4.7	23	77	8	92	19	20	22	38	1.94
35733840--35733909	22	3.2	22	76	8	79	22	22	14	40	1.90
35734122--35734218	30	3.2	30	76	2	106	27	27	16	27	1.97
35735936--35735983	11	3.6	13	86	13	55	75	6	4	14	1.16
35735934--35735965	11	2.9	11	100	0	64	75	9	0	15	1.05
35735958--35735997	18	2.4	17	84	12	55	75	5	7	12	1.18
35736909--35736965	11	5.5	10	73	22	55	77	1	17	3	1.00
35736898--35736965	21	3.2	20	80	12	66	76	2	17	2	1.04
35736909--35736965	5	11.0	5	77	17	55	77	1	17	3	1.00
35736909--35736965	16	3.7	14	80	17	60	77	1	17	3	1.00
35737013--35737043	12	2.6	12	100	0	62	45	12	16	25	1.83
35737046--35737116	30	2.4	31	81	11	85	61	1	22	14	1.40
35739236--35739445	40	5.3	40	84	2	212	26	27	22	23	2.00
35740921--35741127	24	8.6	24	96	0	342	36	25	17	20	1.95
35748645--35748851	24	8.6	24	96	0	342	36	25	17	20	1.95
35757951--35758104	40	3.9	40	87	3	123	24	29	24	20	1.99
35757975--35758137	40	4.1	41	88	3	208	27	26	21	23	1.99
35761159--35761255	30	3.2	30	75	2	97	28	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35766692--35766772	39	2.1	39	90	4	128	28	9	14	46	1.77
35769710--35769790	31	2.7	31	83	5	87	27	22	11	39	1.87
35770771--35770854	26	3.2	26	96	0	150	33	4	25	36	1.77
35772636--35772905	137	2.0	137	95	0	486	25	19	24	30	1.98
35776613--35776696	26	3.2	26	96	0	150	33	4	25	36	1.77
35778477--35778763	137	2.1	137	94	0	502	24	18	25	32	1.97
35782901--35783158	45	5.9	45	78	8	257	24	17	26	31	1.97
35782901--35783163	84	3.0	88	81	9	240	24	16	26	31	1.96
35784774--35784860	45	1.9	45	85	0	120	31	24	17	27	1.97
35785190--35785313	43	2.9	43	91	2	198	31	32	24	12	1.92
35785294--35785417	38	3.2	38	83	2	131	28	25	23	23	2.00
35789250--35789380	29	4.5	29	78	5	122	25	17	32	25	1.97
35797383--35797513	29	4.5	29	78	5	122	25	17	32	25	1.97
35802236--35802619	194	2.0	194	95	1	689	31	16	14	37	1.89
35804647--35804698	2	26.0	2	100	0	104	50	0	0	50	1.00
35807880--35807957	31	2.5	31	91	0	129	26	26	16	29	1.97
35807981--35808072	42	2.2	42	92	0	148	34	21	14	29	1.93
35808217--35808340	26	4.8	26	92	1	214	25	22	25	26	2.00
35809146--35809232	27	3.2	27	91	3	131	18	26	20	34	1.96
35809375--35809609	81	2.9	81	89	1	339	28	8	21	40	1.83
35809352--35809770	27	15.6	27	80	4	238	32	8	21	38	1.83
35820453--35820553	28	3.5	28	86	6	114	28	13	27	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35820482--35820553	29	2.5	28	91	6	110	29	13	27	29	1.95
35835214--35835347	29	4.6	29	85	1	101	26	31	16	26	1.96
35835213--35835372	58	2.7	59	86	3	200	25	30	16	27	1.96
35835273--35835372	29	3.4	29	100	0	200	27	28	15	30	1.96
35837580--35837782	40	5.2	40	82	8	231	24	20	27	27	1.99
35837575--35837778	80	2.6	77	84	4	259	24	20	27	27	1.99
35845641--35845814	38	4.5	40	86	8	220	24	21	28	25	1.99
35845641--35845841	39	5.2	40	83	9	240	23	20	28	27	1.99
35845641--35845841	77	2.6	78	87	6	279	23	20	28	27	1.99
35845641--35845820	37	4.7	38	83	10	208	24	20	28	26	1.99
35853612--35853709	49	2.0	49	97	0	187	26	10	25	37	1.88
35853601--35853697	49	2.1	45	88	7	140	25	8	27	38	1.84
35853815--35854007	40	4.8	40	97	0	359	23	20	29	26	1.99
35853787--35854007	120	1.8	119	92	0	370	24	20	28	26	1.99
35865502--35865571	27	2.5	28	93	2	115	27	14	28	30	1.95
35865502--35865583	27	3.0	27	84	8	69	28	15	25	30	1.96
35873442--35873511	27	2.5	28	93	2	115	27	14	28	30	1.95
35873442--35873523	27	3.0	27	84	8	69	28	15	25	30	1.96
35876054--35878081	371	5.5	371	98	0	3914	36	14	9	39	1.80
35878176--35878235	24	2.5	24	89	8	95	25	20	8	46	1.78
35878412--35878467	15	3.8	15	80	20	73	46	0	0	53	1.00
35878572--35878797	9	24.6	9	76	8	143	47	12	0	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878572--35878797	18	12.3	18	75	9	161	47	12	0	38	1.48
35878600--35878821	114	1.9	114	86	3	313	47	12	0	38	1.48
35884443--35884493	21	2.4	21	80	0	66	29	19	49	1	1.60
35884905--35885174	42	6.4	42	97	1	504	22	34	19	24	1.97
35884905--35885174	85	3.2	85	98	0	515	22	34	19	24	1.97
35884905--35885174	127	2.1	125	97	1	468	22	34	19	24	1.97
35891537--35891643	37	2.8	38	90	4	171	23	20	14	41	1.90
35891560--35891661	31	3.1	31	88	8	132	23	19	15	41	1.90
35891852--35891970	24	5.0	24	85	9	154	26	24	21	27	1.99
35891852--35891970	47	2.5	48	89	8	172	26	24	21	27	1.99
35892020--35892079	20	3.0	20	95	0	111	33	20	10	36	1.86
35892020--35892074	11	5.4	11	70	16	55	30	20	10	38	1.87
35892121--35892168	25	1.9	25	86	0	69	25	16	25	33	1.96
35899885--35900014	30	4.1	31	91	8	183	24	20	16	39	1.92
35899864--35899997	37	3.8	37	82	15	176	23	20	15	40	1.91
35900205--35900322	24	5.0	23	84	7	130	27	23	22	27	1.99
35900205--35900322	46	2.5	47	86	8	150	27	23	22	27	1.99
35900373--35900432	20	3.0	20	95	0	111	33	20	10	36	1.86
35900373--35900427	11	5.4	11	70	16	55	30	20	10	38	1.87
35900474--35900521	25	1.9	25	86	0	69	25	16	25	33	1.96
35902532--35902610	19	4.1	18	77	11	68	10	16	3	69	1.31
35903517--35903552	18	1.9	18	88	5	54	33	8	0	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35906742--35906813	33	2.2	33	87	0	108	23	20	26	29	1.99
35907874--35907917	20	2.1	21	83	4	54	50	20	4	25	1.67
35908061--35908108	20	2.4	20	100	0	96	37	14	27	20	1.92
35910278--35910341	27	2.4	27	89	0	101	34	18	20	26	1.96
35915256--35915288	6	5.5	6	100	0	66	15	18	30	36	1.91
35917367--35917645	141	2.0	141	99	0	549	29	10	18	40	1.85
35918193--35918469	48	5.8	48	75	11	246	27	20	25	26	1.99
35920611--35920680	26	2.7	26	90	2	113	41	2	7	48	1.45
35922902--35922968	29	2.3	29	97	0	125	22	32	26	17	1.96
35923588--35923638	24	2.1	24	96	0	93	72	7	9	9	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292