genome.fa.s9.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  205  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60958384--60958430	2	24.0	2	83	12	62	46	4	0	48	1.21
60958834--60958909	3	25.0	3	94	2	134	67	0	0	32	0.91
60959380--60959414	15	2.3	16	90	9	56	42	0	57	0	0.99
60960915--60961095	69	2.7	68	82	7	217	35	19	15	29	1.93
60961100--60961233	71	1.9	71	90	0	214	29	23	16	30	1.96
60960952--60961630	160	4.4	158	91	7	1114	32	21	17	29	1.96
60960952--60961630	306	2.2	308	93	5	1146	32	21	17	29	1.96
60961406--60961539	70	1.9	71	90	1	216	29	23	16	31	1.96
60965887--60966159	69	3.8	70	81	14	347	30	22	17	29	1.96
60965839--60966260	151	2.7	154	91	7	696	32	20	17	29	1.96
60978402--60978443	2	21.0	2	85	9	59	47	4	0	47	1.23
60978851--60978925	3	25.0	3	100	0	150	66	0	0	33	0.92
60981612--60981907	36	8.0	36	72	10	213	35	11	15	37	1.84
60981612--60981907	18	16.1	18	73	9	186	35	11	15	37	1.84
60985405--60985546	40	3.5	40	83	1	124	27	23	26	22	1.99
60985444--60985572	40	3.2	39	84	6	152	24	22	27	25	2.00
60987033--60987261	28	8.1	27	75	10	138	22	18	6	52	1.69
60987106--60987265	29	5.7	27	78	14	128	24	18	6	50	1.70
60987040--60987243	55	3.6	54	78	11	182	22	18	5	53	1.65
60987045--60987266	29	7.8	29	75	9	122	23	18	6	51	1.68
60988736--60988765	2	15.0	2	100	0	60	50	0	0	50	1.00
60989792--60989833	22	1.9	22	85	0	57	61	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60990391--60990433	22	2.0	22	100	0	86	46	16	9	27	1.77
60993958--60993995	2	19.0	2	100	0	76	50	0	0	50	1.00
60998627--60998671	16	2.8	16	82	0	54	26	15	15	42	1.87
61000093--61000240	73	2.0	72	79	8	156	39	8	12	40	1.72
61000692--61000814	60	2.2	54	75	20	128	53	3	0	43	1.17
61000707--61000830	60	2.0	60	84	9	162	56	3	0	39	1.21
61002105--61002230	63	2.0	63	93	0	216	35	13	16	34	1.88
61004761--61004894	51	2.6	51	95	3	234	33	4	25	36	1.76
61004761--61004894	26	5.2	25	95	1	223	33	4	25	36	1.76
61010574--61010709	26	5.2	26	94	0	236	33	5	25	36	1.78
61013623--61013686	24	2.7	24	83	7	76	6	15	3	75	1.14
61019553--61019685	41	3.2	41	78	7	135	42	15	20	21	1.88
61019768--61019864	36	2.7	35	78	13	101	18	0	24	56	1.41
61019827--61019872	22	2.1	22	83	0	56	15	0	28	56	1.39
61020059--61020085	7	3.9	7	100	0	54	29	0	14	55	1.40
61020059--61020111	21	2.5	20	79	8	52	28	0	22	49	1.50
61020075--61020120	21	2.2	21	88	0	65	26	4	23	45	1.71
61020419--61020733	113	2.8	117	77	9	317	35	14	19	31	1.91
61021091--61021241	75	2.0	75	97	2	286	22	34	6	36	1.80
61021638--61021684	23	2.0	24	84	12	62	21	25	0	53	1.46
61024889--61024955	26	2.6	26	97	0	125	37	23	7	31	1.83
61026740--61026901	40	4.1	40	90	4	249	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61029469--61029663	9	21.9	9	72	7	121	45	19	1	34	1.58
61029469--61029628	70	2.3	70	83	4	196	45	20	1	33	1.59
61031350--61031385	12	3.0	12	95	0	63	38	8	19	33	1.82
61032118--61032156	21	1.9	20	89	5	60	58	7	5	28	1.47
61032165--61032195	2	15.5	2	100	0	62	51	0	0	48	1.00
61032339--61032408	11	5.7	11	70	26	52	61	1	2	34	1.20
61032316--61032425	36	3.0	36	83	8	134	57	3	4	34	1.37
61032339--61032406	25	2.7	25	81	6	84	61	1	2	33	1.20
61032362--61032445	37	2.3	37	83	8	100	59	5	2	32	1.34
61032549--61032723	3	58.0	3	67	13	58	58	4	6	31	1.42
61033599--61033647	22	2.3	21	82	3	62	22	2	38	36	1.66
61037743--61037912	43	4.0	42	83	3	196	26	18	24	30	1.98
61038741--61038790	22	2.2	22	82	13	57	8	18	0	74	1.06
61038749--61038790	22	1.9	22	85	9	59	9	16	0	73	1.08
61039471--61039528	30	2.0	30	93	3	100	46	6	0	46	1.29
61040657--61040713	27	2.1	27	83	6	71	26	7	3	63	1.36
61043291--61043325	16	2.3	15	90	5	52	28	0	2	68	1.04
61043291--61043332	18	2.5	16	88	7	57	26	0	2	71	0.98
61044668--61044933	46	6.0	45	84	8	330	22	23	15	39	1.91
61044846--61044921	38	2.0	38	100	0	152	21	26	18	34	1.96
61047068--61047119	11	4.7	11	76	9	52	63	3	0	32	1.12
61048027--61048070	18	2.4	18	85	7	54	52	2	2	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61049268--61049428	47	3.4	47	78	3	162	33	18	21	26	1.96
61049528--61049625	34	2.9	35	78	4	94	41	14	13	30	1.84
61051911--61051950	20	2.0	21	90	5	64	37	0	0	62	0.95
61062360--61062412	28	2.0	25	82	17	63	69	3	1	24	1.15
61062897--61062969	13	5.5	13	74	9	67	53	4	4	38	1.39
61065499--61065547	25	2.0	26	84	8	66	24	16	20	38	1.92
61067030--61067165	26	5.2	26	94	0	236	36	25	5	33	1.78
61068031--61068065	18	1.9	18	94	0	61	40	14	14	31	1.86
61068035--61068081	18	2.6	18	80	6	51	40	19	12	27	1.88
61069364--61069435	36	2.0	36	97	0	135	16	18	22	43	1.88
61080179--61080205	9	3.0	9	100	0	54	88	0	11	0	0.50
61081591--61081659	21	3.2	21	71	15	68	31	14	7	46	1.72
61081578--61081665	44	2.0	44	90	0	140	30	14	7	46	1.73
61081920--61081974	21	2.7	21	78	10	60	40	0	3	56	1.17
61081990--61082026	19	2.0	19	89	5	58	40	0	5	54	1.24
61082007--61082037	12	2.6	12	94	0	53	41	0	6	51	1.27
61084353--61084392	21	1.9	21	89	0	62	45	7	10	37	1.66
61086551--61086589	2	19.5	2	94	0	69	48	0	0	51	1.00
61086596--61086650	25	2.3	23	78	12	58	43	3	16	36	1.65
61086706--61086780	22	3.3	22	75	10	69	60	5	5	29	1.41
61086712--61086859	25	5.8	25	70	12	104	58	4	6	30	1.45
61086676--61086863	77	2.3	82	78	8	199	57	4	6	31	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61086853--61086925	23	3.2	22	74	14	60	57	2	4	35	1.32
61086880--61086925	25	1.9	25	86	8	69	60	0	4	34	1.16
61087208--61087246	16	2.4	16	86	0	51	43	28	5	23	1.75
61087405--61087532	30	4.3	30	94	0	211	19	6	49	25	1.71
61088227--61088432	87	2.4	87	81	4	227	36	18	13	31	1.89
61088576--61088610	14	2.5	14	85	0	52	60	5	17	17	1.55
61088470--61088682	88	2.4	88	92	0	356	38	18	17	26	1.92
61088590--61092395	75	50.3	75	77	9	3348	34	19	16	30	1.94
61089550--61089827	91	3.1	87	82	8	303	36	17	17	27	1.93
61089733--61092395	73	35.3	74	80	8	2616	34	19	16	30	1.94
61090508--61090744	91	2.7	86	80	7	244	37	16	17	28	1.91
61088590--61092375	221	16.7	221	84	9	4831	33	19	16	30	1.94
61091408--61091662	91	2.8	88	81	7	282	34	18	18	28	1.94
61088810--61092424	919	3.9	919	95	1	6380	34	19	16	30	1.94
61092566--61092610	13	3.4	13	84	6	63	68	4	11	15	1.34
61092394--61092754	100	3.7	101	82	6	387	37	18	18	25	1.93
61092579--61092754	90	2.0	87	86	3	244	36	20	19	23	1.95
61093630--61093666	16	2.3	16	86	13	58	2	13	0	83	0.74
61093630--61093667	17	2.3	16	86	4	58	2	13	0	84	0.73
61100566--61100648	21	3.9	21	77	3	67	37	25	21	15	1.93
61100564--61100638	21	3.5	22	81	7	82	38	25	21	14	1.91
61102077--61102112	15	2.3	17	81	18	51	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61103830--61103862	12	2.6	13	85	9	50	9	45	0	45	1.35
61104926--61104989	27	2.3	28	91	2	103	32	28	7	31	1.85
61105095--61105182	25	3.2	27	82	14	110	19	25	23	31	1.98
61105105--61105193	25	3.2	28	81	10	94	21	26	20	31	1.98
61106263--61106296	10	3.3	10	84	8	50	29	8	8	52	1.62
61111656--61111688	12	2.6	13	85	9	50	9	45	0	45	1.35
61112751--61112814	28	2.3	28	88	0	92	31	29	9	29	1.88
61112921--61113011	28	3.2	28	90	4	139	20	24	23	31	1.98
61112921--61113036	56	2.1	55	82	9	137	19	24	21	34	1.96
61123212--61123411	3	64.0	3	79	8	179	65	1	4	29	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292