genome.fa.s9.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  128  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38097756--38097891	72	1.9	72	96	0	254	31	11	18	38	1.86
38112914--38113014	43	2.3	43	86	9	136	32	23	15	27	1.95
38117120--38117283	71	2.3	71	96	2	303	19	28	17	35	1.94
38117120--38117317	71	2.8	70	86	6	224	21	28	16	33	1.95
38120842--38120901	30	2.0	30	90	0	93	38	8	25	28	1.84
38126136--38126162	14	1.9	14	100	0	54	22	7	11	59	1.56
38130198--38130792	198	3.0	198	95	0	1100	25	28	16	29	1.97
38133724--38133884	40	4.0	40	79	4	164	25	27	20	26	1.99
38143267--38143433	40	4.2	40	81	6	171	23	26	23	26	2.00
38145480--38145873	198	2.0	198	96	1	727	26	28	15	29	1.96
38145387--38145799	68	6.2	64	69	15	218	24	28	16	30	1.97
38146506--38146566	30	2.0	30	83	0	77	31	22	8	37	1.84
38148178--38148273	29	3.3	29	85	1	131	31	31	13	23	1.93
38148484--38148536	16	3.4	16	81	2	72	5	22	24	47	1.73
38152724--38152843	29	4.2	30	86	7	169	28	29	14	28	1.95
38159708--38159855	43	3.5	41	78	9	143	33	21	15	29	1.94
38159689--38159855	86	2.0	85	81	3	201	34	22	14	28	1.93
38163418--38163549	27	4.9	27	86	9	155	33	21	26	18	1.97
38165141--38165222	26	3.2	26	98	0	155	35	25	7	31	1.84
38171371--38171529	27	5.9	27	82	10	182	34	21	25	18	1.96
38171371--38171529	54	2.9	55	88	5	227	34	21	25	18	1.96
38173125--38173206	26	3.2	26	98	0	155	35	25	7	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38173479--38173631	48	3.2	48	79	3	175	28	18	28	25	1.98
38175788--38176046	46	5.6	46	79	6	256	28	16	29	25	1.96
38175788--38176052	92	2.8	92	81	7	288	28	16	29	25	1.97
38180445--38180552	46	2.5	41	80	16	114	28	13	24	33	1.94
38180440--38180538	46	2.2	46	87	7	139	31	12	21	35	1.90
38194378--38194487	44	2.6	43	83	11	122	31	15	21	30	1.94
38194378--38194471	44	2.1	44	88	7	138	34	14	19	31	1.92
38198719--38198745	14	1.9	14	100	0	54	29	3	14	51	1.60
38205663--38205860	71	2.8	70	92	3	294	33	17	28	20	1.95
38205729--38205846	41	3.1	41	60	28	98	32	17	28	21	1.96
38205697--38205860	71	2.3	71	100	0	328	35	17	28	18	1.94
38208751--38208794	21	2.1	20	83	8	52	72	0	0	27	0.85
38216618--38216706	46	1.9	46	100	0	178	47	7	24	20	1.76
38216636--38216712	24	3.3	24	64	14	70	45	7	19	27	1.77
38216948--38217007	29	2.1	29	90	0	93	33	26	18	21	1.96
38221397--38221433	16	2.3	16	90	0	56	62	8	8	21	1.49
38221747--38221771	13	1.9	13	100	0	50	16	40	24	20	1.91
38224252--38224306	28	2.0	28	100	0	110	20	10	21	47	1.80
38225932--38225969	20	1.9	20	88	0	58	52	10	2	34	1.50
38227059--38227122	32	2.0	32	93	0	110	48	14	17	20	1.81
38229586--38229616	16	1.9	16	100	0	62	6	19	19	54	1.65
38243896--38243931	15	2.3	16	90	4	56	16	0	2	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38247960--38248022	28	2.2	28	80	0	72	31	28	19	20	1.97
38248371--38248687	27	11.4	27	81	7	251	24	22	19	33	1.97
38248359--38248665	54	5.5	54	82	8	323	25	22	19	33	1.97
38248372--38248687	81	3.8	81	80	8	364	24	22	19	33	1.97
38248445--38248520	36	2.1	36	87	0	107	21	22	21	35	1.96
38254756--38254789	5	6.6	5	89	3	50	2	0	14	82	0.79
38255992--38256038	17	2.8	17	80	0	58	14	2	10	72	1.21
38258635--38258800	43	3.9	43	76	10	144	33	27	15	23	1.95
38266174--38266391	40	5.4	40	85	3	251	26	23	26	23	2.00
38266334--38266417	40	2.1	40	82	4	98	26	27	26	20	1.99
38266171--38266431	119	2.2	120	79	3	276	27	23	25	23	2.00
38266265--38266417	80	1.9	80	80	0	180	26	24	26	22	2.00
38274175--38274352	39	4.5	39	85	3	198	26	21	26	24	2.00
38274165--38274380	40	5.4	40	83	5	233	26	23	26	23	2.00
38274323--38274406	40	2.1	40	82	4	98	26	27	26	20	1.99
38274254--38274406	80	1.9	80	80	0	180	26	24	26	22	2.00
38277297--38277395	42	2.3	42	84	5	128	34	21	18	26	1.96
38277296--38277442	43	3.4	43	76	13	133	34	22	17	25	1.96
38280306--38280402	43	2.3	42	83	7	124	31	13	20	34	1.91
38283159--38283231	37	2.0	37	100	0	146	31	10	16	41	1.83
38287965--38288094	40	3.2	40	82	4	165	23	28	24	23	2.00
38296007--38296136	40	3.2	40	82	4	165	23	28	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38304040--38304151	40	2.8	41	86	8	149	22	28	25	23	1.99
38313416--38313546	29	4.5	29	78	5	122	25	17	32	25	1.97
38317130--38317225	43	2.2	43	88	0	138	31	16	19	32	1.94
38326824--38326894	33	2.2	33	82	7	83	64	4	1	29	1.20
38328196--38328273	32	2.5	31	83	6	86	28	11	14	46	1.79
38328256--38328364	49	2.2	49	82	8	141	36	7	10	45	1.66
38328279--38328399	49	2.4	49	79	4	145	30	8	12	48	1.70
38328710--38328811	37	2.8	37	83	0	123	44	15	17	22	1.87
38332852--38333055	53	3.8	53	73	3	156	36	18	23	21	1.95
38334406--38334473	26	2.7	26	89	10	99	14	20	23	41	1.89
38338374--38338440	28	2.4	28	95	2	118	19	8	26	44	1.80
38350144--38350319	46	3.8	45	79	10	194	20	21	30	27	1.98
38350140--38350312	93	1.9	93	93	0	301	20	21	30	26	1.98
38353217--38353257	15	2.7	15	88	0	64	12	19	9	58	1.61
38355611--38355786	46	3.8	45	78	10	203	21	20	29	28	1.98
38355607--38355779	93	1.9	93	95	0	310	21	20	30	27	1.98
38359261--38359311	21	2.4	21	93	0	84	13	35	17	33	1.89
38365189--38365270	30	2.8	30	96	1	148	32	23	17	26	1.96
38367541--38367745	53	3.8	53	74	3	176	37	17	24	20	1.94
38371106--38371140	18	2.0	18	94	5	63	40	5	20	34	1.76
38388289--38388330	19	2.2	19	86	0	57	47	14	9	28	1.75
38397172--38397199	12	2.3	12	100	0	56	32	42	17	7	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38399050--38399193	40	3.6	40	80	4	121	27	23	25	22	2.00
38399089--38399216	40	3.2	39	82	5	134	25	22	26	25	2.00
38403688--38403767	38	2.1	38	88	0	115	20	23	27	28	1.99
38403760--38403841	43	1.9	43	97	0	155	10	26	32	29	1.91
38408852--38408947	29	3.3	29	89	1	149	30	32	13	23	1.93
38409158--38409200	16	2.7	16	88	0	59	6	16	20	55	1.64
38412405--38412610	101	2.0	100	86	3	288	33	24	15	26	1.95
38416747--38416849	29	3.6	29	81	2	118	21	16	33	29	1.95
38424738--38424840	29	3.6	29	81	2	118	21	16	33	29	1.95
38432786--38432886	28	3.6	28	69	12	73	25	32	15	25	1.96
38432970--38433006	19	2.0	19	89	5	58	16	43	18	21	1.88
38433117--38433155	16	2.4	16	82	0	51	15	17	15	51	1.77
38440272--38440619	173	2.0	172	95	0	624	45	17	9	27	1.79
38446440--38446510	26	2.7	26	86	0	88	25	22	23	28	2.00
38453397--38453519	26	4.8	26	86	3	169	28	21	22	26	1.99
38453397--38453519	52	2.4	51	91	2	203	28	21	22	26	1.99
38453569--38453625	20	3.0	20	87	10	75	33	19	8	38	1.82
38458883--38458999	26	4.6	26	88	1	166	28	23	21	26	1.99
38458883--38458999	52	2.3	51	94	2	200	28	23	21	26	1.99
38459049--38459123	20	3.8	20	91	6	111	34	18	9	37	1.83
38459049--38459104	11	5.5	11	71	16	57	32	19	10	37	1.86
38459066--38459122	9	5.8	10	76	15	57	35	19	8	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38469796--38469959	40	4.1	40	77	3	141	25	27	21	25	2.00
38477903--38478066	40	4.1	40	81	4	170	25	28	21	24	1.99
38477889--38478066	80	2.2	80	81	3	198	24	28	21	25	1.99
38480499--38480539	20	2.0	20	85	0	55	31	14	39	14	1.87
38482333--38482430	24	4.0	24	90	1	151	34	6	38	20	1.77
38488508--38488671	71	2.3	71	100	0	328	18	28	17	35	1.94
38488508--38488705	71	2.8	70	91	3	258	20	28	17	33	1.95
38496086--38496249	71	2.3	71	100	0	328	18	28	17	35	1.94
38496086--38496283	71	2.8	70	91	3	258	20	28	17	33	1.95
38500793--38500893	24	4.2	23	83	3	112	34	5	39	19	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292