genome.fa.s9.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  162  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48313796--48313829	17	2.0	17	88	0	50	26	23	38	11	1.89
48317337--48317538	39	5.2	39	93	0	341	23	29	25	21	1.99
48317520--48317555	17	2.1	17	100	0	72	27	30	19	22	1.98
48317481--48317590	56	2.0	56	96	0	202	24	28	23	23	2.00
48326306--48326423	40	3.0	40	89	0	182	24	18	27	29	1.98
48329772--48330085	39	8.1	39	93	0	513	23	29	25	21	1.99
48336446--48336550	47	2.2	47	96	0	192	34	7	30	27	1.85
48337772--48337802	14	2.3	13	94	5	53	70	6	6	16	1.29
48344259--48344295	18	2.1	19	85	10	51	16	43	29	10	1.82
48357167--48357223	29	1.9	30	85	3	80	33	22	10	33	1.88
48357759--48357804	22	2.0	22	83	8	56	30	19	17	32	1.95
48360504--48360688	40	4.6	41	87	6	231	24	20	27	28	1.99
48360504--48360688	79	2.3	81	84	7	236	24	20	27	28	1.99
48360504--48360721	79	2.7	78	80	11	221	25	20	27	27	1.99
48360504--48360721	119	1.8	119	81	7	273	25	20	27	27	1.99
48367679--48367758	42	1.9	42	92	0	133	33	31	17	17	1.93
48368704--48368871	47	3.6	47	80	7	180	23	30	17	28	1.97
48368608--48368873	94	2.9	92	75	10	247	24	28	18	29	1.98
48370168--48370338	93	1.8	93	93	2	299	28	28	21	22	1.99
48370163--48370335	46	3.7	46	80	11	210	28	27	21	22	1.99
48375911--48376080	93	1.8	92	93	1	295	28	28	21	21	1.99
48375906--48376077	46	3.7	46	79	11	208	29	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48382130--48382301	93	1.8	93	92	2	292	27	30	20	22	1.98
48382122--48382297	46	3.8	46	76	12	198	28	29	19	22	1.98
48384002--48384439	150	2.9	149	82	9	469	43	5	10	41	1.60
48384024--48384504	150	3.2	146	80	9	462	43	5	10	41	1.61
48389271--48389535	46	5.7	46	77	9	209	28	19	29	23	1.98
48395101--48395309	46	4.5	46	72	13	151	29	19	27	23	1.98
48397981--48398056	27	2.8	27	81	2	98	23	30	11	34	1.91
48399559--48399627	27	2.5	27	92	2	111	30	27	14	27	1.95
48407047--48407123	40	1.9	40	86	0	109	15	15	31	37	1.89
48412914--48412954	15	2.5	17	88	7	59	12	29	43	14	1.82
48419314--48419351	19	2.0	19	85	10	51	28	0	2	68	1.03
48421503--48421913	46	9.0	46	89	3	526	41	13	24	20	1.89
48421514--48421929	89	4.6	90	86	4	491	41	13	24	20	1.88
48421996--48422039	13	3.4	13	77	0	52	38	2	22	36	1.67
48422959--48423033	26	3.0	26	81	15	113	56	2	12	29	1.49
48423028--48423248	47	4.8	46	86	5	275	42	13	23	20	1.88
48423028--48423248	93	2.4	93	86	3	284	42	13	23	20	1.88
48424186--48424256	36	2.0	36	94	5	126	22	12	36	28	1.91
48428757--48428835	40	2.0	40	87	0	113	15	16	32	35	1.90
48434122--48434264	39	3.7	39	93	1	252	21	23	27	27	1.99
48442089--48442271	39	4.7	39	95	0	330	20	22	28	28	1.98
48447709--48447933	40	5.6	40	90	3	346	26	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48450035--48450088	25	2.2	25	93	0	90	31	12	25	29	1.93
48450674--48450712	16	2.6	16	92	8	64	46	0	15	38	1.46
48450834--48450965	58	2.2	59	85	10	171	44	1	3	50	1.26
48452830--48452857	8	3.5	8	100	0	56	50	0	10	39	1.37
48452932--48452990	28	2.1	28	90	0	91	32	28	6	32	1.83
48458250--48458432	39	4.6	39	85	0	222	24	30	21	24	1.99
48461574--48461631	28	2.1	28	93	3	100	31	27	6	34	1.83
48463659--48463692	2	17.0	2	100	0	68	50	0	0	50	1.00
48464017--48464141	58	2.2	57	85	4	162	32	19	12	36	1.88
48464035--48464163	58	2.2	59	78	1	143	29	19	12	38	1.88
48464839--48464872	15	2.2	16	89	5	52	52	29	5	11	1.61
48464907--48464957	26	2.0	26	84	7	68	43	15	3	37	1.66
48468532--48468563	4	8.0	4	100	0	64	25	0	0	75	0.81
48472310--48472349	13	3.1	13	100	0	80	45	22	0	32	1.53
48473084--48473108	11	2.3	11	100	0	50	60	0	32	8	1.26
48475057--48475088	2	16.5	2	93	6	57	53	0	0	46	1.00
48475592--48475722	67	2.0	67	90	3	210	34	13	12	38	1.84
48475769--48475846	32	2.5	31	87	4	111	29	5	12	52	1.61
48475930--48475994	30	2.2	30	83	5	78	44	4	0	50	1.22
48475919--48475994	20	3.8	19	74	22	66	44	3	0	51	1.20
48476272--48476312	17	2.3	18	87	8	57	31	0	2	65	1.05
48476271--48476313	18	2.2	20	80	12	54	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476346--48476370	9	2.8	9	100	0	50	20	12	0	68	1.21
48477180--48477217	18	2.1	18	85	9	51	50	7	0	42	1.31
48478513--48478540	13	2.2	13	100	0	56	42	7	0	50	1.30
48478545--48478579	2	17.5	2	100	0	70	48	0	0	51	1.00
48479834--48479868	2	17.5	2	100	0	70	51	0	0	48	1.00
48480364--48480418	27	2.0	27	82	0	65	40	18	21	20	1.92
48480570--48480678	27	4.1	27	82	5	132	23	19	20	36	1.95
48481858--48481904	19	2.4	19	89	3	67	61	4	29	4	1.34
48482999--48483024	2	13.0	2	100	0	52	50	0	0	50	1.00
48484285--48484399	44	2.6	44	85	2	149	35	13	22	27	1.92
48484285--48484418	46	3.0	45	82	4	153	35	14	23	26	1.93
48493208--48493493	137	2.1	136	96	0	518	32	25	18	24	1.97
48493741--48493793	26	2.0	27	85	7	74	24	15	22	37	1.92
48495271--48495406	26	5.2	26	94	0	236	36	25	5	33	1.78
48496736--48496879	72	2.0	72	100	0	288	37	9	4	48	1.55
48497077--48497111	18	2.0	18	88	5	54	60	2	0	37	1.12
48497066--48497151	44	2.0	43	83	2	109	52	3	9	34	1.51
48497343--48497397	25	2.2	24	78	15	58	30	1	3	63	1.22
48498760--48498788	2	14.5	2	100	0	58	51	0	0	48	1.00
48498843--48498904	30	2.2	29	82	8	74	58	0	3	38	1.15
48500286--48500492	44	4.7	44	71	10	118	28	20	18	32	1.96
48500554--48500737	44	4.1	45	72	6	142	29	22	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48500554--48500737	88	2.1	87	84	4	217	29	22	15	32	1.95
48500620--48500755	44	3.0	44	73	8	123	28	21	16	33	1.95
48505414--48505521	24	4.5	24	90	3	157	25	17	23	34	1.96
48507226--48507400	47	3.7	47	75	12	189	22	18	28	30	1.97
48514222--48514396	30	5.8	30	88	1	219	26	48	4	21	1.69
48514874--48514917	23	1.9	23	86	9	63	34	4	0	61	1.16
48514877--48514921	20	2.2	20	84	7	56	35	4	0	60	1.17
48514937--48515012	25	2.9	25	74	7	71	34	5	1	59	1.28
48514949--48515007	25	2.4	25	85	0	82	35	3	0	61	1.13
48514874--48515003	23	5.5	23	66	20	56	34	4	2	58	1.31
48515030--48515094	25	2.8	23	88	6	87	33	7	6	52	1.55
48515247--48515294	16	3.1	15	90	6	69	31	2	2	64	1.16
48515247--48515298	8	6.5	8	82	8	61	30	1	1	65	1.14
48522286--48522339	17	3.3	17	82	10	76	44	9	14	31	1.77
48530558--48530593	12	3.0	12	87	0	54	41	5	27	25	1.77
48530554--48530585	16	1.9	17	93	6	57	40	6	28	25	1.79
48532167--48532214	16	3.1	15	90	6	69	64	2	2	31	1.16
48532163--48532214	8	6.5	8	82	8	61	65	1	1	30	1.14
48532162--48532218	24	2.4	24	79	5	71	64	1	3	29	1.20
48532365--48532429	25	2.7	25	88	6	91	52	4	7	35	1.51
48532453--48532511	25	2.4	25	91	0	91	61	0	1	37	1.07
48532444--48532505	15	4.1	14	78	15	52	62	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48532451--48532523	25	2.8	26	81	8	85	57	1	4	36	1.26
48532539--48532583	20	2.2	20	84	7	56	57	0	4	37	1.19
48532543--48532586	23	1.9	23	86	9	63	59	0	4	36	1.18
48533067--48533241	30	5.8	30	89	0	224	23	4	46	25	1.69
48534141--48534317	47	3.8	47	79	12	211	21	19	28	30	1.98
48542388--48542563	46	3.8	47	78	10	182	21	19	28	30	1.98
48542384--48542556	93	1.9	93	90	2	276	21	20	29	28	1.98
48545501--48545561	15	4.1	15	80	4	61	11	19	14	54	1.71
48547961--48548134	45	3.8	46	76	14	189	20	21	29	29	1.98
48547957--48548127	92	1.9	92	92	4	292	20	21	29	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292