genome.fa.s9.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  106  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32424715--32424843	1	129.0	1	67	0	69	83	8	3	4	0.88
32424808--32424860	5	9.8	5	92	8	70	79	16	3	0	0.88
32424715--32424878	58	2.8	57	78	13	156	81	8	3	6	0.96
32424712--32424862	64	2.4	64	80	8	159	82	9	3	4	0.94
32424715--32424867	11	13.4	11	75	15	107	82	9	3	4	0.93
32426864--32426930	30	2.2	30	89	0	107	17	46	25	10	1.80
32426877--32426929	17	3.4	17	67	20	51	16	49	20	13	1.79
32441795--32441837	21	2.0	21	86	0	59	44	18	4	32	1.71
32441811--32441918	19	5.7	19	86	6	148	37	14	9	37	1.79
32441811--32441918	36	2.9	36	79	10	119	37	14	9	37	1.79
32444034--32444134	39	2.5	40	85	1	132	30	22	24	21	1.99
32444034--32444216	40	4.6	40	82	3	181	27	22	26	23	1.99
32451913--32452013	39	2.5	40	85	1	132	30	22	24	21	1.99
32451913--32452095	40	4.6	40	82	3	181	27	22	26	23	1.99
32455308--32455350	21	2.0	21	86	0	59	34	9	34	20	1.85
32456673--32456730	30	1.9	30	92	0	98	32	13	25	27	1.94
32457070--32457338	47	5.7	47	71	10	158	27	20	30	21	1.98
32457070--32457328	94	2.8	91	77	7	245	27	20	30	22	1.98
32457070--32457285	47	4.7	45	76	10	177	26	19	31	22	1.98
32460030--32460124	43	2.2	43	94	0	163	21	40	21	17	1.92
32463236--32463305	35	2.0	35	100	0	140	34	25	17	22	1.96
32467494--32467537	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32470910--32471238	48	7.0	48	90	6	523	34	6	27	31	1.82
32471150--32471229	39	2.1	39	97	0	151	35	7	26	31	1.84
32471384--32471483	37	2.7	37	95	0	173	25	19	33	23	1.97
32479662--32479751	19	4.6	19	72	10	67	47	14	8	28	1.74
32481033--32481065	2	16.5	2	100	0	66	51	0	0	48	1.00
32483737--32483876	74	1.9	74	89	2	219	40	28	14	17	1.88
32486601--32486649	25	2.0	25	100	0	98	32	8	24	34	1.85
32487108--32487154	12	3.9	12	75	10	51	65	2	31	0	1.04
32487089--32487137	21	2.4	21	86	3	64	71	0	28	0	0.86
32487105--32487156	24	2.2	24	86	6	70	65	1	32	0	1.04
32494421--32494451	16	1.9	16	93	0	53	45	0	9	45	1.36
32496389--32496453	20	3.2	20	71	16	71	18	21	21	38	1.93
32496389--32496647	40	6.5	39	77	9	209	19	26	17	35	1.94
32496449--32496513	20	3.2	20	70	8	60	20	27	15	36	1.92
32496535--32496587	20	2.6	19	80	11	61	18	26	13	41	1.87
32497843--32497899	30	1.9	30	88	0	87	38	10	22	28	1.87
32504136--32504182	24	2.0	24	95	0	85	38	0	23	38	1.55
32506307--32506379	34	2.1	34	82	0	83	31	23	23	21	1.98
32517921--32517956	18	1.9	19	88	5	56	25	22	30	22	1.99
32525544--32525569	2	13.0	2	100	0	52	50	0	0	50	1.00
32525929--32525956	2	14.0	2	100	0	56	50	0	0	50	1.00
32526378--32526571	81	2.4	82	91	2	302	21	22	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32526378--32526571	41	4.8	41	87	1	300	21	22	28	27	1.99
32533837--32533868	2	16.0	2	100	0	64	50	0	0	50	1.00
32534662--32534852	41	4.7	41	86	3	269	21	21	27	29	1.99
32534662--32534852	81	2.3	82	88	2	269	21	21	27	29	1.99
32544485--32544510	9	2.9	9	100	0	52	23	23	0	53	1.46
32564222--32564382	29	5.6	29	93	0	259	26	32	14	26	1.95
32564164--32564382	87	2.5	87	82	2	244	26	33	15	25	1.95
32566350--32566574	112	2.0	112	98	0	432	25	22	17	33	1.96
32575283--32575320	20	1.9	20	84	10	51	28	26	2	42	1.69
32575480--32575505	13	2.0	13	100	0	52	46	0	23	30	1.53
32581129--32581162	2	17.0	2	100	0	68	50	0	0	50	1.00
32585853--32585933	42	1.9	42	89	0	126	39	13	17	29	1.88
32585856--32585950	42	2.3	42	84	0	118	41	16	13	28	1.87
32587359--32587416	17	3.3	17	90	4	80	20	46	22	10	1.81
32590095--32590125	16	1.9	16	93	0	53	48	3	3	45	1.34
32596601--32596774	46	3.8	46	76	10	176	24	29	18	28	1.98
32596566--32596773	93	2.3	92	82	8	237	24	29	18	27	1.98
32603023--32603059	20	1.9	18	89	10	56	35	21	0	43	1.53
32605773--32605943	43	4.0	43	93	1	281	30	33	23	12	1.92
32605936--32606019	38	2.2	38	86	0	123	32	25	20	22	1.98
32611332--32611416	38	2.2	38	83	4	109	31	22	21	24	1.98
32620256--32620383	39	3.3	39	79	0	157	22	25	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32636220--32636347	39	3.3	39	85	0	184	21	25	20	32	1.98
32638236--32638335	27	3.7	28	82	5	107	44	18	8	30	1.78
32638235--32638352	27	4.4	27	76	9	89	41	16	11	30	1.84
32638973--32639031	28	2.1	28	100	0	118	45	25	11	16	1.82
32643072--32643103	14	2.4	13	90	10	55	62	12	6	18	1.50
32645424--32645515	47	2.0	47	88	0	139	46	13	14	26	1.80
32649376--32649409	6	5.7	6	100	0	68	14	0	0	85	0.60
32649649--32649833	49	3.8	49	78	13	195	27	20	29	22	1.99
32649656--32649833	99	1.8	96	87	6	268	26	20	29	23	1.99
32649654--32649831	50	3.7	49	79	13	199	26	20	29	22	1.99
32653893--32654079	99	1.9	97	86	4	268	28	29	17	24	1.97
32653884--32654068	49	3.8	48	81	11	214	28	28	18	25	1.98
32655911--32656040	51	2.6	51	79	4	149	29	23	19	27	1.98
32659683--32659879	50	3.9	50	82	7	222	27	29	18	24	1.98
32659694--32659879	100	1.9	99	87	3	275	27	29	17	24	1.97
32663583--32663757	50	3.5	49	80	8	176	29	27	17	25	1.98
32665585--32665760	50	3.5	49	80	7	176	29	27	17	25	1.98
32667595--32667770	50	3.5	49	80	7	176	29	27	17	25	1.98
32671750--32671775	13	2.0	13	100	0	52	30	0	15	53	1.42
32675268--32675292	13	1.9	13	100	0	50	16	36	40	8	1.77
32684264--32684337	29	2.6	29	89	4	105	25	16	32	25	1.96
32688038--32688183	43	3.4	44	77	11	151	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32694953--32694986	2	17.0	2	87	0	50	50	2	2	44	1.32
32695626--32695699	29	2.6	29	89	4	105	25	16	32	25	1.96
32699584--32699715	29	4.6	29	84	1	140	25	17	32	25	1.97
32702644--32702789	43	3.4	44	79	7	158	27	19	25	27	1.99
32707272--32707447	46	3.8	46	77	12	198	30	29	19	20	1.97
32707279--32707450	93	1.8	93	93	0	299	29	29	20	20	1.98
32711455--32711524	27	2.5	28	95	2	124	28	14	27	30	1.95
32711455--32711536	27	3.0	27	85	8	78	29	15	24	30	1.96
32718041--32718214	46	3.8	46	78	14	198	29	29	20	20	1.98
32718048--32718217	93	1.8	91	93	2	295	28	30	20	21	1.98
32718090--32718233	46	3.1	44	76	15	141	29	28	20	22	1.98
32718636--32718692	30	1.9	30	85	0	78	28	22	5	43	1.75
32723933--32724095	72	2.3	72	86	4	213	22	17	27	31	1.97
32727148--32727240	19	5.1	19	70	12	86	30	8	12	48	1.71
32727122--32727250	54	2.4	54	93	0	213	33	8	13	44	1.75
32727297--32727337	9	4.6	9	85	8	57	24	0	19	56	1.42
32734408--32734534	58	2.2	59	82	10	156	44	4	23	26	1.73
32736617--32736981	49	7.7	49	71	10	154	26	27	16	28	1.97
32743258--32743571	49	6.6	49	70	10	165	23	27	20	28	1.99
32743402--32743574	94	1.8	95	83	3	233	23	26	19	30	1.98
32744229--32744271	20	2.3	18	81	14	52	37	20	0	41	1.53
32745864--32745902	8	4.9	8	87	0	51	20	2	5	71	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32746308--32746346	17	2.4	17	91	4	62	28	0	7	64	1.21
32746308--32746346	8	4.8	8	90	6	60	28	0	7	64	1.21
32750077--32750332	39	6.6	39	89	1	363	22	21	26	29	1.99
32753057--32753090	17	2.1	17	88	5	52	61	2	11	23	1.43
32753170--32753375	53	3.9	52	81	5	225	32	15	25	26	1.96
32754344--32754378	13	2.7	13	90	0	61	8	54	28	8	1.60
32754398--32754448	20	2.5	20	96	0	93	19	37	29	13	1.90
32756532--32756592	29	2.1	28	90	3	95	29	14	27	27	1.95
32756539--32756655	29	4.0	29	84	0	135	29	12	29	28	1.93
32763597--32763804	53	3.9	52	78	7	188	33	16	24	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292