genome.fa.s9.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  228  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66442673--66443317	241	2.7	241	98	0	1227	34	17	15	32	1.91
66443437--66443570	9	14.2	9	76	9	124	47	20	0	31	1.56
66443454--66443571	39	3.0	39	83	8	143	46	22	0	30	1.57
66443450--66443570	57	2.1	57	87	0	170	46	22	0	30	1.58
66449165--66449209	18	2.5	18	77	0	54	80	4	4	11	1.01
66453077--66453121	22	2.0	22	100	0	90	28	13	22	35	1.92
66456943--66457109	43	3.9	42	85	7	228	23	27	20	28	1.99
66456943--66457103	86	1.9	87	92	1	270	24	27	20	26	1.99
66460779--66460828	6	8.3	6	100	0	100	84	0	0	16	0.63
66462078--66462114	16	2.2	16	90	9	56	70	0	0	29	0.88
66462077--66462123	16	2.9	16	79	17	53	65	0	2	31	1.04
66465134--66465394	130	2.0	130	96	0	479	34	22	18	24	1.96
66468266--66468295	13	2.3	13	94	0	51	50	6	0	43	1.28
66468890--66468943	28	1.9	28	82	14	67	33	1	11	53	1.47
66472733--66472901	87	1.9	87	91	0	275	24	8	30	35	1.86
66473157--66473196	16	2.5	15	84	11	53	12	2	2	82	0.87
66476100--66476148	10	4.9	10	82	9	64	20	10	2	67	1.30
66478113--66478144	16	2.0	17	88	11	50	31	6	18	43	1.75
66487517--66487551	17	2.1	17	100	0	70	31	11	5	51	1.61
66490964--66490994	15	2.1	15	100	0	62	35	19	12	32	1.90
66496988--66497021	2	17.0	2	100	0	68	50	0	0	50	1.00
66499118--66499196	34	2.3	35	77	12	85	43	0	3	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66505048--66505092	16	2.8	16	83	6	56	44	4	2	48	1.35
66508333--66508401	34	2.0	34	100	0	138	43	5	2	47	1.42
66508406--66508435	13	2.4	12	94	5	51	53	0	0	46	1.00
66511183--66511216	15	2.1	17	89	10	54	8	17	0	73	1.08
66511623--66511688	19	3.9	17	69	25	50	54	0	0	45	0.99
66511651--66511687	14	2.5	15	87	12	51	54	0	0	45	1.00
66511624--66511677	21	2.5	20	80	17	56	55	0	0	44	0.99
66513529--66513570	7	6.0	7	100	0	84	28	0	0	71	0.86
66514539--66514584	3	15.7	3	95	4	85	67	0	0	32	0.91
66529450--66529506	20	2.8	20	86	0	69	21	29	0	49	1.50
66533091--66533158	21	3.2	21	75	8	57	23	16	14	45	1.84
66533131--66533226	42	2.3	42	81	3	113	16	21	18	42	1.89
66533158--66533243	42	2.0	43	84	2	111	13	25	19	40	1.89
66536921--66537079	43	3.7	43	73	9	146	23	18	24	33	1.96
66543298--66543341	20	2.2	20	95	0	79	15	0	27	56	1.40
66543872--66543902	16	1.9	16	100	0	62	32	12	19	35	1.90
66546907--66546951	23	2.0	23	90	0	72	66	0	2	31	1.04
66546931--66546989	25	2.4	25	82	5	75	61	0	1	37	1.07
66546950--66546984	18	1.9	18	88	0	52	62	0	2	34	1.10
66547526--66547582	30	1.9	30	89	7	89	52	14	14	19	1.74
66553189--66553331	59	2.4	59	95	0	259	26	16	25	30	1.97
66553480--66554065	297	2.0	297	100	0	1172	38	11	14	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66554264--66554308	23	2.0	23	82	8	56	37	8	13	40	1.76
66559326--66559395	36	2.0	34	86	5	95	42	8	12	35	1.74
66561106--66561147	19	2.3	18	84	12	50	40	0	2	57	1.12
66563144--66563173	11	2.6	12	94	5	53	30	0	0	70	0.88
66563854--66563879	2	13.0	2	100	0	52	50	0	0	50	1.00
66565167--66565191	2	12.5	2	100	0	50	52	0	0	48	1.00
66568921--66568986	33	2.0	32	85	2	87	45	19	9	25	1.80
66575223--66575315	40	2.5	37	86	8	118	33	24	8	33	1.86
66576931--66577019	27	3.3	27	93	0	142	23	24	12	39	1.89
66577082--66577252	31	5.5	31	80	6	179	27	26	16	29	1.97
66577108--66577252	59	2.4	61	87	3	204	27	26	17	28	1.98
66577257--66577357	33	3.1	33	89	1	150	27	23	12	35	1.92
66577343--66577526	91	2.0	91	100	0	368	25	19	14	41	1.88
66583079--66583117	2	19.5	2	100	0	78	51	0	0	48	1.00
66583478--66583505	14	2.0	14	100	0	56	21	7	28	42	1.79
66584515--66584713	99	2.0	99	96	0	362	29	17	18	35	1.94
66590680--66590722	17	2.5	17	100	0	86	67	0	16	16	1.24
66594335--66594359	8	3.1	8	100	0	50	76	0	0	24	0.80
66594332--66594400	29	2.3	31	80	9	81	60	5	0	33	1.20
66594613--66594670	29	2.0	30	82	3	73	29	18	1	50	1.57
66600409--66600433	10	2.5	10	100	0	50	48	0	16	36	1.46
66601921--66602069	47	3.2	46	84	5	190	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66607163--66607194	15	2.1	15	94	5	55	59	0	0	40	0.97
66607104--66607187	31	2.8	30	77	10	91	52	1	0	46	1.08
66607373--66607424	25	2.1	25	100	0	104	53	0	19	26	1.45
66608692--66608717	2	13.0	2	100	0	52	50	0	50	0	1.00
66609431--66609467	3	12.3	3	100	0	74	67	0	0	32	0.91
66610225--66610296	37	2.2	33	79	18	78	15	20	8	55	1.66
66610236--66610310	37	2.0	37	94	0	132	18	20	6	54	1.65
66610478--66610517	18	2.2	18	86	0	53	25	5	2	67	1.23
66611040--66611098	26	2.3	25	80	11	66	32	6	3	57	1.41
66612105--66612160	27	2.1	27	96	0	103	19	8	7	64	1.45
66612963--66613091	11	11.7	11	68	18	63	35	2	5	56	1.35
66612963--66613081	34	3.6	33	73	18	113	35	1	5	57	1.30
66612964--66613210	45	5.7	43	72	19	153	34	3	4	58	1.34
66612948--66613083	65	2.1	63	82	10	159	36	2	4	56	1.34
66612964--66613142	22	8.5	21	73	17	133	35	2	3	58	1.31
66613107--66613184	22	3.4	24	72	21	76	30	3	5	60	1.36
66613071--66613151	36	2.2	38	82	10	96	34	3	3	58	1.34
66616301--66616354	21	2.5	22	79	8	76	55	3	5	35	1.41
66617656--66617768	57	2.0	56	92	1	190	23	15	30	30	1.96
66618097--66618145	18	2.8	18	84	9	66	44	4	2	48	1.33
66618561--66618595	15	2.3	15	90	0	52	60	0	8	31	1.27
66618742--66618792	18	2.8	18	85	8	68	45	3	1	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66619208--66619242	15	2.3	15	95	0	61	57	0	8	34	1.29
66617936--66619261	647	2.1	645	98	0	2589	33	6	18	40	1.77
66619214--66619281	24	2.8	23	76	10	64	57	0	4	38	1.19
66622758--66622825	24	2.8	24	86	8	102	27	19	7	45	1.76
66623002--66623057	15	3.8	15	80	20	73	46	0	0	53	1.00
66623162--66623387	9	24.6	9	76	8	143	47	12	0	38	1.48
66623162--66623387	18	12.3	18	75	9	161	47	12	0	38	1.48
66623190--66623411	114	1.9	114	86	3	313	47	12	0	38	1.48
66629333--66629399	31	2.2	31	83	0	80	17	4	17	59	1.53
66629474--66629673	43	4.7	43	90	2	314	24	31	21	24	1.98
66629474--66629673	84	2.3	86	90	2	323	24	31	21	24	1.98
66639534--66639572	15	2.5	16	83	8	53	38	0	0	61	0.96
66642501--66642553	28	1.9	28	88	3	81	45	0	11	43	1.40
66642539--66642563	13	1.9	13	100	0	50	40	0	4	56	1.18
66645437--66645566	38	3.4	38	78	2	134	33	25	20	20	1.97
66648805--66648873	31	2.2	31	82	5	77	52	13	11	23	1.72
66657193--66657367	87	2.0	87	97	0	332	41	13	13	32	1.83
66659076--66659123	24	2.1	23	85	11	64	16	4	0	79	0.89
66659212--66659246	14	2.4	14	90	4	52	17	0	2	80	0.84
66659221--66659246	7	3.7	7	100	0	52	11	0	0	88	0.52
66660002--66660058	7	8.0	7	72	3	51	42	36	0	21	1.53
66660003--66660058	14	3.9	14	80	2	67	42	35	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66660003--66660066	14	4.5	14	82	2	65	42	35	1	20	1.62
66660128--66660162	15	2.4	15	90	4	54	45	34	0	20	1.51
66660114--66660167	22	2.3	24	78	9	58	44	31	0	24	1.54
66660379--66660548	51	3.5	51	68	15	167	31	20	21	25	1.98
66660373--66660562	96	2.0	96	96	0	353	30	20	23	26	1.98
66660817--66660969	40	3.8	40	75	9	125	29	19	18	32	1.96
66660853--66660993	39	3.5	39	75	10	124	26	19	18	35	1.95
66667101--66667134	8	4.2	8	100	0	68	11	14	11	61	1.56
66669975--66670056	21	3.8	21	80	15	103	25	32	8	32	1.86
66669966--66670056	45	2.0	45	97	0	173	25	31	8	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292