genome.fa.s9.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  136  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40416506--40416572	27	2.5	27	73	7	66	26	8	17	46	1.78
40420546--40420611	27	2.5	28	78	14	77	27	9	16	46	1.77
40434448--40434615	40	4.2	40	83	0	210	22	21	27	27	1.99
40434448--40434615	80	2.1	80	88	0	246	22	21	27	27	1.99
40442857--40443064	40	5.2	40	86	2	283	22	21	27	27	1.99
40445916--40445967	24	2.2	24	83	13	63	50	25	3	21	1.65
40447042--40447405	126	2.9	126	93	0	611	37	15	17	29	1.91
40447504--40447554	13	4.1	12	78	16	50	66	0	3	29	1.09
40447844--40447898	14	3.9	14	79	9	58	60	1	0	38	1.08
40447870--40447906	19	2.0	18	94	5	65	67	0	0	32	0.91
40447879--40448028	63	2.4	64	81	12	177	65	5	4	25	1.31
40448300--40448372	18	4.0	18	71	16	69	16	0	56	27	1.41
40448311--40448417	29	3.4	30	74	21	94	17	0	49	31	1.53
40448314--40448388	37	2.0	37	97	0	141	17	0	53	29	1.44
40448655--40448947	85	3.4	85	90	3	455	19	26	24	29	1.98
40448932--40448963	16	2.0	16	100	0	64	18	31	18	31	1.95
40448995--40449277	44	6.5	43	70	15	159	24	17	20	37	1.93
40448956--40449147	87	2.2	87	92	0	312	23	15	22	38	1.93
40460567--40460814	126	2.0	127	93	2	428	39	15	16	29	1.89
40460941--40460992	21	2.5	21	84	3	61	63	3	5	26	1.34
40461213--40461250	18	2.1	18	100	0	76	52	0	5	42	1.24
40461266--40461327	19	3.1	19	81	11	63	58	1	0	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40461309--40461441	58	2.3	58	82	8	150	63	5	5	26	1.37
40461308--40461437	56	2.3	54	80	12	138	63	5	5	26	1.38
40461716--40461788	18	4.0	18	71	16	69	16	0	56	27	1.41
40461734--40461833	29	3.2	29	83	13	94	16	1	52	31	1.50
40461730--40461804	37	2.0	37	100	0	150	16	0	54	29	1.42
40462972--40463034	30	2.1	31	87	3	92	25	23	14	36	1.93
40463228--40463417	24	8.0	24	88	4	269	25	22	23	28	1.99
40463253--40463417	47	3.5	47	92	1	267	25	22	24	27	2.00
40463228--40463418	71	2.7	72	88	4	280	25	22	23	28	1.99
40463476--40463532	9	5.9	9	73	15	51	35	21	7	36	1.80
40463476--40463535	20	3.0	20	90	0	102	33	20	8	38	1.82
40463571--40463618	25	1.9	25	82	0	60	25	14	25	35	1.94
40464742--40464881	27	5.2	27	87	3	192	40	8	23	27	1.84
40464804--40465055	27	9.4	27	85	3	197	33	8	20	37	1.83
40464742--40464897	54	2.9	54	83	3	190	39	8	21	30	1.84
40464932--40465072	27	5.3	26	84	2	138	31	7	19	41	1.78
40467853--40467916	31	2.1	31	90	0	101	25	23	15	35	1.94
40468109--40468296	23	8.0	24	88	6	260	25	21	23	29	1.99
40468130--40468296	47	3.6	47	90	4	257	25	20	23	29	1.99
40468354--40468410	9	5.9	9	73	15	51	35	21	8	35	1.84
40468350--40468412	20	3.2	20	95	0	117	31	19	12	36	1.89
40468449--40468496	25	1.9	25	82	0	60	25	14	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40469621--40469841	27	8.2	27	86	2	291	39	9	23	26	1.86
40469820--40470015	27	7.3	27	81	6	168	31	9	19	39	1.83
40469874--40470015	27	5.3	27	87	2	189	31	7	19	40	1.80
40469892--40470032	27	5.3	26	82	2	129	31	7	19	41	1.80
40476922--40476992	35	2.0	35	97	0	133	43	15	11	29	1.81
40481213--40481346	52	2.6	52	83	6	184	27	28	15	28	1.96
40482549--40482613	22	3.0	21	73	8	60	23	9	23	44	1.81
40482550--40482634	43	2.0	41	86	4	116	21	10	24	43	1.84
40484992--40485110	41	2.9	40	81	10	118	31	37	15	15	1.89
40492426--40492605	48	3.9	48	75	10	192	25	19	26	28	1.99
40492426--40492597	91	1.9	90	86	1	245	26	19	25	29	1.98
40495345--40495550	40	5.2	40	85	2	254	26	27	20	25	1.99
40502460--40502498	17	2.3	17	95	0	69	28	12	23	35	1.91
40511972--40512208	47	5.0	47	94	0	375	33	10	29	27	1.90
40512041--40512162	22	5.3	22	63	27	65	31	13	29	25	1.93
40513726--40514044	40	8.0	40	91	0	494	20	20	31	27	1.98
40516487--40516653	40	4.2	40	82	2	185	25	27	21	25	1.99
40516487--40516653	80	2.1	79	83	7	205	25	27	21	25	1.99
40517478--40517523	17	2.5	19	74	22	53	34	23	17	23	1.96
40524483--40524648	40	4.2	39	81	3	172	24	27	22	25	2.00
40524499--40524648	79	1.9	79	84	5	205	24	27	22	26	2.00
40525472--40525517	17	2.5	19	74	22	53	34	23	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40529608--40529774	40	4.2	40	81	2	176	24	27	22	25	2.00
40529624--40529774	80	1.9	79	83	6	198	23	27	22	25	2.00
40530598--40530643	17	2.5	19	74	22	53	34	23	17	23	1.96
40537594--40537760	40	4.2	40	82	2	185	25	27	21	25	1.99
40537594--40537760	80	2.1	79	83	7	205	25	27	21	25	1.99
40538585--40538630	17	2.5	19	74	22	53	34	23	17	23	1.96
40545416--40545533	41	3.1	41	60	28	98	32	17	28	21	1.96
40545384--40545547	71	2.3	71	100	0	328	35	17	28	18	1.94
40548260--40548360	16	6.2	16	76	16	84	62	0	1	35	1.07
40548267--40548357	18	4.8	18	74	25	89	61	0	2	36	1.08
40548260--40548358	34	2.9	34	77	11	103	62	0	2	35	1.07
40550395--40550504	42	2.6	42	81	4	123	26	17	23	32	1.96
40555315--40555407	20	4.7	20	76	10	75	37	17	10	34	1.84
40555569--40555639	26	2.9	26	73	12	69	26	23	23	25	2.00
40555626--40555681	22	2.5	23	76	5	60	35	21	26	16	1.94
40555844--40555889	23	2.0	24	86	4	67	47	13	2	36	1.54
40559063--40559368	94	3.3	93	74	7	253	30	16	27	26	1.97
40559060--40559285	46	4.8	47	76	7	165	30	15	26	26	1.96
40562962--40563030	28	2.5	28	92	2	113	20	10	26	43	1.83
40563665--40563825	27	6.0	27	82	0	205	33	8	19	38	1.82
40563668--40563818	54	2.8	54	91	0	239	31	7	21	39	1.80
40563813--40564161	27	12.9	27	83	7	431	40	9	22	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40563812--40564169	54	6.6	54	92	0	572	40	8	22	27	1.84
40581222--40581290	15	4.6	15	83	0	84	11	17	13	57	1.64
40581213--40581292	30	2.7	30	82	7	99	11	17	15	56	1.67
40585357--40585392	18	2.0	18	94	0	63	41	5	22	30	1.76
40588200--40588365	48	3.5	48	82	6	178	28	20	27	23	1.99
40591519--40591552	16	2.1	16	88	0	50	38	11	11	38	1.79
40593794--40593833	20	2.0	21	85	5	55	35	15	17	32	1.91
40594101--40594144	22	2.0	23	95	4	81	34	15	31	18	1.92
40600126--40600215	40	2.3	39	81	11	94	37	18	11	32	1.86
40600160--40600215	20	2.8	20	81	10	78	39	19	10	30	1.86
40600342--40600486	72	2.0	72	82	5	177	26	22	24	26	2.00
40603151--40603322	93	1.8	93	94	0	308	27	28	21	22	1.99
40603144--40603319	46	3.8	46	78	10	205	28	28	21	21	1.98
40605048--40605100	27	2.0	27	88	0	79	47	20	15	16	1.83
40605064--40605303	27	8.9	27	80	7	238	41	20	13	24	1.88
40605063--40605303	54	4.5	55	82	7	278	41	20	13	24	1.88
40605059--40605303	81	3.0	81	86	3	341	42	20	13	24	1.88
40607069--40607109	3	14.3	3	85	14	52	31	0	0	68	0.90
40630578--40630640	24	2.6	24	100	0	126	20	17	26	34	1.95
40638428--40638490	24	2.6	24	100	0	126	20	17	26	34	1.95
40643274--40643437	40	4.1	40	81	6	179	25	21	28	24	1.99
40649071--40649277	53	3.8	54	78	3	211	20	23	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40653159--40653313	42	3.7	42	80	5	161	28	28	15	27	1.96
40655591--40655630	21	2.0	20	85	5	53	50	27	2	20	1.61
40659657--40659973	27	11.7	27	83	8	362	39	23	7	29	1.83
40659955--40660068	27	4.2	27	87	4	167	40	17	15	26	1.90
40659711--40660054	54	6.4	54	77	12	294	39	21	10	29	1.86
40659709--40660078	81	4.6	80	81	8	345	39	21	10	28	1.87
40659963--40660095	54	2.5	54	83	4	144	37	18	18	24	1.94
40660443--40660468	8	3.2	8	100	0	52	30	23	34	11	1.90
40660729--40660780	27	2.0	26	84	3	68	17	26	21	34	1.95
40663556--40663585	15	1.9	16	93	6	53	40	26	0	33	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292