genome.fa.s9.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  144  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42808160--42808185	12	2.2	12	100	0	52	23	0	0	76	0.78
42808401--42808443	2	21.5	2	100	0	86	48	0	0	51	1.00
42811258--42811424	40	4.2	40	82	2	185	25	27	21	25	1.99
42811258--42811424	80	2.1	79	83	7	205	25	27	21	25	1.99
42812249--42812294	17	2.5	19	74	22	53	34	23	17	23	1.96
42819269--42819435	40	4.2	40	82	2	185	25	27	21	25	1.99
42819269--42819435	80	2.1	79	83	7	205	25	27	21	25	1.99
42820260--42820305	17	2.5	19	74	22	53	34	23	17	23	1.96
42829755--42829780	9	2.9	9	100	0	52	7	23	23	46	1.78
42829936--42829975	20	2.0	20	95	0	71	47	5	27	20	1.70
42832607--42832777	92	1.9	92	83	6	224	33	18	19	28	1.95
42836554--42836644	29	3.1	29	90	3	130	36	12	19	31	1.89
42837981--42838109	46	2.8	46	80	4	134	27	21	29	21	1.99
42839349--42839388	21	1.9	21	94	0	71	10	37	30	22	1.87
42845218--42845365	40	3.7	40	80	4	172	25	26	22	25	2.00
42845199--42845364	80	2.1	81	82	3	201	24	25	23	26	2.00
42853170--42853347	40	4.5	40	81	6	193	23	25	24	25	2.00
42853196--42853346	80	1.9	81	87	4	225	23	27	23	25	2.00
42864239--42864409	93	1.8	93	92	0	288	28	28	21	21	1.98
42864234--42864406	46	3.7	46	75	13	183	29	27	20	21	1.98
42868941--42869062	37	3.3	37	91	0	190	22	31	19	27	1.98
42869164--42869260	49	2.0	49	97	0	185	30	34	7	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42869228--42869288	28	2.2	28	97	2	115	36	36	0	27	1.57
42875733--42875902	46	3.7	45	78	6	198	28	27	21	22	1.99
42875738--42875906	92	1.8	91	93	1	293	27	28	21	21	1.99
42881091--42881269	39	4.5	39	91	2	261	18	23	27	29	1.98
42891000--42891053	23	2.3	23	100	0	108	18	14	20	46	1.84
42890993--42891053	23	2.4	27	73	23	76	19	13	21	45	1.84
42892742--42892775	17	1.9	18	88	5	52	26	55	0	17	1.42
42895331--42895361	16	1.9	16	100	0	62	29	19	12	38	1.89
42895512--42895549	20	1.9	20	88	0	58	28	7	18	44	1.78
42895425--42895641	60	3.7	59	86	2	258	36	8	14	40	1.77
42896349--42896491	74	1.9	74	89	0	223	37	15	9	37	1.80
42900199--42900381	91	2.0	91	98	0	357	35	13	16	34	1.88
42901137--42901184	3	16.0	3	100	0	96	66	0	0	33	0.92
42905962--42906037	40	1.9	40	86	0	107	31	32	15	19	1.94
42909570--42909840	48	6.2	41	76	10	175	29	27	15	27	1.96
42909601--42909723	42	3.0	42	79	5	126	30	27	14	26	1.95
42909673--42909818	48	3.0	48	89	2	213	28	27	15	28	1.96
42909812--42910096	37	7.8	37	84	4	357	27	28	17	26	1.98
42909812--42910096	73	3.9	73	89	2	421	27	28	17	26	1.98
42909830--42910105	110	2.5	108	85	2	363	28	28	16	26	1.97
42913097--42913133	17	2.2	17	95	0	65	54	2	0	43	1.14
42914249--42914273	7	3.6	7	100	0	50	84	0	16	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42916646--42916721	38	2.0	38	100	0	152	36	10	13	39	1.79
42919754--42919817	21	3.1	20	76	14	67	9	34	29	26	1.88
42930670--42930703	16	2.1	16	89	10	52	50	5	0	44	1.26
42932328--42932413	31	2.8	30	80	5	102	26	24	16	32	1.96
42932624--42932701	26	3.1	25	82	8	88	26	19	20	33	1.96
42935326--42935439	17	6.4	19	91	8	134	37	12	13	36	1.82
42935334--42935441	19	5.9	19	93	6	181	37	11	14	36	1.82
42939387--42939451	26	2.5	26	82	0	76	83	3	7	6	0.91
42939419--42939450	7	4.7	7	96	3	57	90	0	0	9	0.45
42939388--42939451	13	5.0	12	76	12	56	84	1	7	6	0.84
42939915--42939948	16	2.1	16	100	0	68	41	5	23	29	1.78
42940225--42940523	44	6.8	44	80	11	335	28	15	27	28	1.96
42940208--42940874	87	7.6	87	81	7	728	28	14	26	30	1.95
42940208--42940802	175	3.4	176	88	4	773	28	15	27	29	1.96
42940208--42940871	175	3.8	174	85	6	705	28	14	26	30	1.95
42941100--42941394	78	3.8	78	88	1	439	33	18	22	25	1.97
42941427--42941562	45	3.0	45	93	1	229	30	14	29	25	1.95
42941334--42941597	89	2.9	89	73	10	223	31	17	26	25	1.97
42941917--42942028	17	6.3	18	91	8	137	38	10	15	35	1.82
42941917--42942021	19	5.8	19	93	6	175	38	11	14	36	1.82
42944464--42944523	25	2.4	25	77	20	72	58	1	5	35	1.30
42947514--42947680	40	4.2	40	79	2	158	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42947530--42947678	80	1.9	79	83	6	194	22	26	24	26	2.00
42955517--42955683	40	4.2	40	79	2	158	23	26	23	26	2.00
42955533--42955681	80	1.9	79	83	6	194	22	26	24	26	2.00
42961754--42961898	40	3.6	40	86	4	202	22	26	25	25	2.00
42963261--42963428	40	4.2	40	82	1	185	24	26	22	26	2.00
42968251--42968289	19	2.1	19	85	9	53	33	5	2	58	1.33
42970881--42970910	8	3.9	8	95	4	53	40	26	0	33	1.57
42970879--42970912	15	2.3	15	85	14	52	41	29	0	29	1.57
42970879--42970912	8	4.6	7	92	7	50	41	29	0	29	1.57
42970840--42970971	57	2.4	57	81	7	137	40	32	4	22	1.74
42971595--42971625	2	15.5	2	100	0	62	48	0	0	51	1.00
42973342--42973520	40	4.4	40	81	3	189	25	24	25	24	2.00
42973342--42973560	80	2.7	80	80	5	228	26	24	25	23	2.00
42973393--42973546	40	3.8	40	81	6	141	26	25	25	22	2.00
42976327--42976380	13	4.1	13	82	15	58	74	1	22	1	1.02
42976340--42976373	16	2.1	16	94	0	59	73	2	23	0	0.97
42981837--42981939	28	3.7	28	89	0	152	24	33	14	27	1.94
42982753--42982813	30	2.0	30	83	0	77	37	6	24	31	1.81
42985736--42985766	16	1.9	16	93	0	53	9	19	19	51	1.74
42989490--42989586	28	3.5	28	87	5	126	25	28	14	30	1.95
42991911--42992094	40	4.6	40	78	10	198	26	27	21	23	1.99
42991911--42992095	79	2.3	82	82	7	220	27	27	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43007730--43007879	67	2.2	67	81	8	171	32	17	28	21	1.96
43007754--43007937	67	2.8	64	77	8	194	29	17	29	22	1.97
43010083--43010205	46	2.7	45	84	5	149	30	17	29	21	1.97
43015184--43015282	48	2.1	48	86	0	135	23	17	29	30	1.97
43019659--43019766	43	2.5	43	79	4	121	27	23	14	34	1.94
43026549--43026735	40	4.7	40	80	4	171	28	22	25	22	1.99
43026549--43026702	80	1.9	80	85	0	209	27	22	26	23	1.99
43026553--43026735	80	2.3	80	80	0	204	28	23	26	21	1.99
43031326--43031373	20	2.3	21	89	3	71	43	0	4	52	1.20
43032300--43032334	16	2.2	16	90	10	54	40	0	5	54	1.24
43032324--43032361	2	19.5	2	83	5	51	47	0	0	52	1.00
43038257--43038282	2	13.0	2	100	0	52	50	0	0	50	1.00
43040521--43040551	9	3.6	9	95	4	55	0	6	0	93	0.35
43043462--43043520	21	2.7	22	86	5	93	37	6	0	55	1.26
43043611--43043650	16	2.5	15	84	11	53	67	0	0	32	0.91
43043802--43043828	2	13.5	2	100	0	54	51	0	0	48	1.00
43045003--43045037	9	3.8	9	88	3	52	20	40	5	34	1.76
43050655--43050900	40	6.2	40	91	1	370	29	26	21	23	1.99
43050655--43050900	80	3.1	80	94	0	422	29	26	21	23	1.99
43051430--43051461	2	16.0	2	93	0	55	46	0	3	50	1.17
43052288--43052313	13	2.0	13	100	0	52	61	7	0	30	1.24
43059990--43060115	44	2.9	44	91	0	216	43	11	16	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43067208--43067375	49	3.5	47	78	7	158	25	19	30	25	1.98
43071309--43071363	12	4.2	12	77	22	58	41	1	3	52	1.29
43071302--43071354	27	2.0	27	100	0	106	41	1	3	52	1.30
43071473--43071506	16	2.1	16	89	10	52	44	2	2	50	1.32
43079811--43079941	40	3.3	40	78	2	147	25	24	27	22	2.00
43087773--43087923	40	3.8	40	77	13	134	27	23	26	22	2.00
43087809--43087939	40	3.3	40	79	2	156	25	23	27	23	2.00
43090495--43090597	40	2.6	38	86	9	127	20	29	26	24	1.99
43099457--43099498	2	21.0	2	100	0	84	50	0	0	50	1.00
43099495--43099554	27	2.3	26	85	2	75	21	21	20	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292