genome.fa.s9.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  216  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63507849--63507902	27	2.0	27	85	7	74	53	0	3	42	1.18
63507860--63507916	27	2.1	27	83	6	71	52	1	3	42	1.28
63519593--63519625	16	2.0	17	88	5	50	75	3	6	15	1.11
63519921--63519952	3	10.7	3	100	0	64	0	34	0	65	0.93
63520438--63520731	159	1.9	158	87	5	441	25	12	17	45	1.83
63524449--63524601	28	5.5	28	84	1	173	41	20	23	14	1.89
63524449--63524601	55	2.8	56	83	2	200	41	20	23	14	1.89
63524727--63524922	101	2.0	100	85	1	266	39	20	22	16	1.92
63530757--63530815	28	2.1	28	87	0	82	33	23	30	11	1.91
63533786--63533834	19	2.5	19	80	3	53	24	4	20	51	1.65
63533947--63534022	38	2.0	40	82	10	95	31	5	17	46	1.70
63533958--63534046	19	4.7	18	75	10	70	31	8	14	44	1.76
63533996--63534046	20	2.6	19	85	11	68	33	9	13	43	1.77
63534178--63534271	19	4.8	19	75	6	82	36	4	14	44	1.65
63534826--63534858	13	2.4	14	90	5	50	42	3	3	51	1.32
63549119--63549537	204	2.0	210	88	5	622	42	21	9	25	1.83
63550614--63550642	14	2.0	15	93	6	51	31	0	0	68	0.89
63562141--63562182	5	8.4	5	79	10	50	19	0	2	78	0.86
63562141--63562187	25	1.9	24	91	4	76	21	0	2	76	0.89
63566470--63566499	4	7.2	4	92	7	51	76	0	0	23	0.78
63568103--63568231	44	2.8	45	82	4	152	34	13	24	27	1.93
63572887--63573280	207	1.9	203	90	5	632	25	21	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63582461--63582497	2	18.5	2	100	0	74	51	0	48	0	1.00
63585379--63586359	404	2.4	403	89	1	1469	37	14	14	34	1.86
63595988--63596026	16	2.4	16	88	12	62	53	0	12	33	1.39
63597112--63597205	33	2.8	33	88	3	125	39	10	21	28	1.87
63597104--63597283	98	1.8	99	80	5	222	35	11	21	31	1.89
63597200--63597314	33	3.5	31	77	12	88	32	13	23	31	1.93
63597219--63597314	33	2.9	33	80	6	97	33	14	22	29	1.94
63598596--63598625	15	2.0	15	100	0	60	26	20	20	33	1.97
63602122--63602179	30	1.9	30	86	6	82	18	25	34	20	1.96
63603611--63603657	5	9.4	5	85	0	67	36	2	2	59	1.21
63603679--63603739	11	6.0	10	72	14	54	72	4	22	0	1.04
63605802--63605898	18	5.4	18	81	0	113	35	13	14	37	1.85
63605795--63605898	36	2.9	36	83	0	136	34	13	14	37	1.85
63605783--63605893	54	2.1	54	84	0	141	35	13	14	36	1.85
63606024--63606123	45	2.2	45	78	3	112	43	17	16	24	1.88
63607295--63607374	24	3.5	21	68	17	52	2	23	3	70	1.16
63609522--63609585	31	2.1	31	87	0	92	26	23	14	35	1.93
63609778--63609967	24	8.0	24	91	4	287	25	21	23	28	1.99
63609777--63609968	47	4.0	48	90	4	282	25	21	23	29	1.99
63609778--63609968	71	2.7	72	90	4	298	25	21	23	29	1.99
63610025--63610101	9	7.9	9	72	16	64	35	20	9	35	1.85
63610021--63610103	20	4.2	20	96	0	157	32	19	12	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63610021--63610092	11	7.1	11	70	17	66	31	19	12	36	1.89
63610140--63610187	25	1.9	25	86	0	69	25	16	25	33	1.96
63611420--63611946	27	19.6	27	84	4	375	40	8	21	28	1.83
63611422--63611947	81	6.5	81	84	4	618	40	8	22	28	1.83
63611422--63611947	54	9.8	54	84	3	616	40	8	22	28	1.83
63614625--63614688	31	2.1	31	90	0	101	25	23	15	35	1.94
63614881--63615068	24	8.0	24	92	5	287	26	21	22	28	1.99
63615126--63615202	9	7.9	9	72	16	64	35	20	9	35	1.85
63615122--63615204	20	4.2	20	96	0	157	32	19	12	36	1.88
63615122--63615193	11	7.1	11	70	17	66	31	19	12	36	1.89
63615240--63615287	25	1.9	25	86	0	69	25	16	25	33	1.96
63616519--63617047	27	19.6	27	84	4	566	41	9	21	27	1.84
63616520--63617047	81	6.5	81	85	3	625	40	9	21	28	1.84
63616520--63617047	54	9.8	54	84	3	625	40	9	21	28	1.84
63624180--63624216	19	1.9	20	88	5	58	35	8	5	51	1.55
63625032--63625106	33	2.3	33	100	0	150	38	10	2	48	1.52
63627518--63627593	37	2.1	37	100	0	152	46	5	7	40	1.56
63632742--63632768	13	2.1	13	100	0	54	14	25	37	22	1.93
63632876--63632937	30	2.1	30	100	0	124	40	9	37	12	1.77
63639579--63639646	30	2.3	30	82	5	75	27	20	4	47	1.69
63645956--63645988	17	2.0	17	94	5	59	36	15	0	48	1.45
63646269--63646538	46	5.9	46	88	2	355	21	22	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63651744--63651778	16	2.1	17	89	5	54	25	8	5	60	1.49
63652258--63652291	17	2.0	17	88	0	50	67	5	8	17	1.37
63661130--63661242	35	3.2	35	87	1	100	34	12	21	31	1.90
63661146--63661266	35	3.5	35	90	2	190	32	11	24	31	1.91
63661903--63661958	18	3.1	17	79	5	58	41	14	5	39	1.68
63661989--63662030	18	2.3	19	83	4	50	54	9	7	28	1.59
63661981--63662037	19	3.1	19	76	5	62	50	10	7	31	1.63
63662371--63662415	23	2.0	23	100	0	90	31	0	17	51	1.46
63662427--63662482	21	2.5	22	78	16	71	39	8	0	51	1.33
63671023--63671320	38	8.1	38	82	10	359	20	21	26	31	1.98
63671120--63671173	27	2.0	27	96	0	99	16	18	33	31	1.93
63671044--63671249	103	2.0	103	93	1	351	18	20	28	31	1.97
63671317--63671443	45	2.9	44	82	7	152	23	23	28	24	2.00
63673475--63673653	98	1.8	98	84	2	243	41	10	21	26	1.84
63677837--63677863	4	6.8	4	100	0	54	48	0	0	51	1.00
63677995--63678020	7	3.7	7	100	0	52	42	0	0	57	0.98
63688568--63688622	9	6.2	9	79	14	53	47	0	1	50	1.11
63689391--63689437	15	3.1	15	70	11	51	55	8	0	36	1.31
63693081--63693109	2	14.5	2	100	0	58	48	0	0	51	1.00
63693529--63693600	14	4.9	14	71	17	58	27	2	4	65	1.25
63693524--63693601	11	6.9	11	69	12	52	29	2	3	64	1.25
63696808--63696985	47	3.8	47	84	5	218	32	27	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63700077--63700161	39	2.2	40	84	2	109	24	1	8	65	1.27
63701252--63701306	20	2.8	20	70	24	55	49	0	1	49	1.11
63709505--63709545	21	2.0	21	90	0	64	29	21	29	19	1.98
63711997--63712030	2	17.0	2	93	0	59	50	2	0	47	1.16
63712989--63713113	62	2.0	62	93	3	216	43	6	12	38	1.67
63713694--63713718	5	5.0	5	100	0	50	60	0	0	40	0.97
63715080--63715118	18	2.2	18	90	0	60	23	5	5	66	1.32
63715079--63715169	42	2.2	41	82	9	105	26	3	4	65	1.26
63715096--63715180	42	2.0	43	81	9	102	24	5	4	64	1.35
63715628--63715652	3	8.3	3	100	0	50	68	0	0	32	0.90
63715908--63715940	6	5.5	6	100	0	66	18	66	0	15	1.25
63721615--63721708	42	2.2	42	88	0	134	17	25	14	42	1.87
63721642--63721771	63	2.1	63	95	0	233	17	26	12	43	1.84
63725968--63726078	57	1.9	58	87	1	161	29	28	18	23	1.97
63726003--63726078	29	2.6	31	79	10	88	30	30	15	23	1.96
63727830--63727995	38	4.3	38	84	3	179	33	27	20	18	1.96
63727830--63727995	78	2.1	78	82	6	194	33	27	20	18	1.96
63731229--63733190	985	2.0	985	95	0	3548	35	17	22	25	1.95
63733186--63733214	9	3.2	9	100	0	58	13	13	41	31	1.84
63741591--63741638	23	2.0	25	88	8	73	66	2	4	27	1.21
63741805--63741842	18	2.2	18	86	9	53	31	0	0	68	0.90
63743027--63743090	16	3.9	16	74	8	65	64	7	0	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63743027--63743092	17	3.9	16	73	9	60	63	7	0	28	1.21
63743167--63743211	19	2.3	19	84	3	54	53	11	0	35	1.37
63746879--63746970	29	3.1	28	73	14	78	61	4	3	30	1.31
63752972--63753063	47	2.0	47	95	0	166	40	18	21	19	1.92
63758127--63758178	19	2.7	20	82	8	54	55	5	0	38	1.24
63758148--63758207	26	2.3	27	79	2	68	53	1	0	45	1.10
63758147--63758184	19	2.1	19	90	5	60	55	2	0	42	1.14
63758582--63759518	131	7.2	131	81	4	928	29	17	12	40	1.86
63758590--63759483	393	2.3	393	86	1	1220	29	17	12	40	1.86
63765438--63766026	302	2.0	302	93	0	1018	27	23	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292