genome.fa.s9.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  139  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41319489--41319571	20	4.2	20	96	0	157	36	12	19	32	1.88
41319625--41319814	24	8.0	24	90	3	278	28	23	21	26	1.99
41319625--41319793	47	3.6	47	93	1	293	29	23	20	26	1.99
41319624--41319814	71	2.7	71	88	5	278	29	23	21	26	1.99
41320008--41320071	31	2.1	31	90	0	101	35	15	23	25	1.94
41322893--41323339	27	16.6	27	87	3	607	27	22	9	40	1.85
41324659--41324715	9	5.9	9	73	15	51	35	8	21	35	1.84
41324657--41324719	20	3.2	20	95	0	117	36	12	19	31	1.89
41324773--41324961	24	8.0	24	90	4	278	29	23	21	25	1.99
41324773--41324961	94	2.0	96	90	4	303	29	23	21	25	1.99
41325155--41325218	31	2.1	31	90	0	101	35	15	23	25	1.94
41331610--41331724	43	2.7	43	82	10	137	26	15	24	33	1.95
41331609--41331749	43	3.3	42	80	5	113	31	14	21	31	1.94
41332493--41332542	23	2.2	22	79	10	57	18	4	26	52	1.63
41339930--41340062	55	2.4	55	82	0	176	30	35	24	10	1.89
41341877--41341921	23	2.0	23	95	0	81	20	26	26	26	1.99
41342792--41342852	27	2.3	27	82	5	70	39	21	11	27	1.88
41342874--41342980	27	4.0	27	82	2	135	35	14	20	29	1.92
41343768--41343887	6	19.3	6	67	21	61	19	20	14	45	1.84
41343790--41343861	19	3.8	19	71	20	60	18	23	15	43	1.88
41343768--41343835	25	2.7	25	97	0	127	19	22	14	44	1.86
41343824--41343855	13	2.5	13	94	0	55	18	28	12	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41347386--41347505	43	2.8	43	83	2	134	27	17	25	30	1.97
41350721--41350753	13	2.6	13	95	4	59	30	0	15	54	1.41
41355560--41355610	6	8.5	6	82	0	66	11	7	0	80	0.90
41355565--41355630	24	2.7	24	76	21	57	15	9	0	75	1.03
41359044--41359207	40	4.1	40	81	4	161	25	28	21	25	1.99
41359044--41359207	80	2.0	80	81	2	186	25	28	21	25	1.99
41361390--41361447	28	2.1	28	96	0	107	17	10	13	58	1.62
41364995--41365176	40	4.6	40	79	8	176	24	24	28	23	2.00
41364995--41365176	78	2.3	80	82	6	210	24	24	28	23	2.00
41371106--41371143	18	2.1	18	95	0	67	7	10	36	44	1.68
41386675--41386838	40	4.1	38	78	9	141	25	28	21	24	1.99
41389292--41389391	26	3.5	28	82	8	87	26	15	29	30	1.95
41389322--41389391	26	2.6	27	90	4	106	25	14	30	30	1.95
41397250--41397319	27	2.5	28	93	2	115	27	14	28	30	1.95
41397250--41397331	27	3.0	27	84	8	69	28	15	25	30	1.96
41398558--41398626	28	2.5	28	95	2	122	18	10	27	43	1.82
41400215--41400252	20	1.9	20	88	0	58	52	10	2	34	1.50
41406502--41406570	28	2.5	28	95	2	122	18	10	27	43	1.82
41411566--41411733	40	4.2	40	79	1	158	22	27	23	26	2.00
41411582--41411731	80	1.9	80	84	5	205	21	27	24	26	1.99
41426037--41426061	11	2.3	11	100	0	50	32	16	20	32	1.94
41427916--41427949	18	1.9	18	94	5	61	29	14	11	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41429095--41429159	29	2.2	29	86	0	94	33	30	10	24	1.90
41429373--41429403	16	1.9	16	93	0	53	9	22	19	48	1.78
41436836--41436921	29	3.0	29	82	1	111	26	32	15	25	1.95
41447962--41448020	30	2.0	30	100	0	118	38	23	6	30	1.81
41450272--41450387	43	2.7	43	73	6	110	27	23	18	31	1.97
41452315--41452349	18	1.9	18	88	0	52	25	8	5	60	1.49
41457571--41457813	48	5.0	48	86	7	337	36	5	25	31	1.80
41457571--41457815	100	2.5	96	91	2	292	36	5	26	31	1.80
41457960--41458104	37	3.9	37	90	0	227	25	18	29	26	1.98
41460943--41461014	29	2.5	28	86	6	92	27	26	15	30	1.96
41460942--41461043	28	3.5	29	80	6	100	28	28	14	28	1.95
41466297--41466414	43	2.8	42	78	7	130	28	22	16	32	1.96
41473189--41473352	71	2.3	71	96	0	301	33	18	28	19	1.95
41478159--41478228	27	2.6	27	97	2	131	31	27	12	28	1.93
41480849--41480978	40	3.2	40	81	4	156	23	24	27	23	2.00
41487401--41487435	18	1.9	18	88	0	52	31	14	40	14	1.86
41490143--41490193	20	2.7	19	82	14	54	41	0	21	37	1.54
41490839--41491005	46	3.6	48	79	6	155	29	16	27	26	1.97
41506637--41506712	40	1.9	39	83	2	98	31	25	14	28	1.95
41510879--41510929	20	2.7	19	82	14	54	41	0	21	37	1.54
41511578--41511700	46	2.7	44	83	7	140	31	19	26	21	1.97
41516413--41516538	40	3.2	38	81	8	137	29	23	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41516413--41516600	80	2.3	80	79	12	206	26	22	27	23	2.00
41520034--41520209	46	3.8	46	81	10	232	20	21	29	28	1.98
41520030--41520201	93	1.8	93	96	0	317	20	22	30	27	1.98
41523153--41523221	15	4.6	15	83	0	84	11	17	13	57	1.64
41523144--41523231	30	3.0	30	81	8	99	10	17	15	56	1.66
41525616--41525791	46	3.8	46	81	10	232	20	21	29	28	1.98
41525612--41525783	93	1.8	93	96	0	317	20	22	30	27	1.98
41532855--41533012	40	4.0	40	79	4	151	26	24	26	22	2.00
41532855--41533042	80	2.3	80	79	12	206	26	23	27	22	2.00
41553313--41553527	44	4.8	44	76	12	177	24	18	29	26	1.98
41553319--41553527	91	2.3	90	89	0	328	25	18	29	26	1.98
41553729--41553758	12	2.5	12	94	0	51	43	6	33	16	1.74
41556988--41557050	30	2.1	30	85	5	83	38	3	26	31	1.72
41570255--41570299	10	4.4	11	86	13	69	42	0	0	57	0.98
41570264--41570374	56	2.0	57	81	13	135	37	0	0	60	1.09
41575705--41575744	21	2.0	21	90	5	64	17	20	40	22	1.92
41576092--41576148	9	5.8	10	76	15	57	36	8	19	35	1.83
41576091--41576165	20	3.8	20	91	6	111	37	9	18	34	1.83
41576110--41576165	11	5.5	11	71	16	57	37	10	19	32	1.86
41576215--41576302	26	3.4	26	95	0	158	27	19	25	28	1.99
41577280--41577397	26	4.6	26	90	1	175	31	22	21	25	1.98
41577453--41577509	20	3.0	20	85	10	66	33	17	10	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41577535--41577584	25	2.0	25	88	0	73	26	16	24	34	1.95
41582640--41582847	40	5.2	39	84	1	218	25	25	22	25	2.00
41582640--41582845	80	2.6	81	84	3	247	25	26	22	25	2.00
41590797--41591004	40	5.2	39	84	1	218	25	25	22	25	2.00
41590797--41591002	80	2.6	81	84	3	247	25	26	22	25	2.00
41596868--41596951	26	3.2	26	89	3	125	27	21	19	32	1.97
41597001--41597095	20	4.8	20	87	5	124	35	16	9	37	1.82
41597038--41597076	11	3.7	11	80	13	55	33	20	10	35	1.86
41597018--41597094	9	7.8	10	73	16	63	36	18	7	37	1.80
41599777--41599851	28	2.7	29	85	8	111	36	9	22	32	1.86
41602222--41602272	23	2.1	24	85	10	68	47	0	3	49	1.20
41602228--41602269	16	2.7	15	85	7	57	50	0	2	47	1.14
41608778--41608941	71	2.3	71	100	0	328	18	28	17	35	1.94
41608778--41608975	71	2.8	70	91	3	258	20	28	17	33	1.95
41613090--41613118	12	2.4	12	100	0	58	44	13	20	20	1.85
41616365--41616528	71	2.3	71	100	0	328	18	28	17	35	1.94
41616365--41616562	71	2.8	70	91	3	258	20	28	17	33	1.95
41623021--41623061	21	1.9	22	85	5	57	39	2	2	56	1.26
41623957--41624140	95	1.9	94	88	1	278	36	20	16	26	1.93
41624304--41624374	37	1.9	37	94	5	126	36	23	2	36	1.70
41624906--41624957	25	2.1	25	88	0	77	34	26	7	30	1.85
41625649--41625693	11	3.9	12	80	8	58	55	2	0	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41625646--41625692	23	2.0	23	100	0	94	53	4	0	42	1.20
41626486--41626542	28	2.0	28	96	0	105	31	21	24	22	1.98
41626967--41627044	27	2.9	27	78	3	86	25	16	20	37	1.93
41638025--41638219	40	4.9	40	88	3	286	27	21	26	24	1.99
41651804--41651878	29	2.6	29	89	0	105	28	18	26	26	1.98
41651789--41651903	29	4.0	28	78	10	99	30	16	26	26	1.97
41651802--41651912	57	1.9	57	81	1	132	28	16	28	26	1.97
41655801--41655971	27	6.4	27	82	2	202	25	22	16	34	1.95
41655801--41655971	54	3.2	53	88	4	227	25	22	16	34	1.95
41659421--41659650	50	4.6	50	77	7	198	26	18	25	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292