genome.fa.s9.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  67  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20164392--20164467	39	1.9	39	89	0	116	27	18	26	27	1.98
20165483--20165606	27	4.6	27	85	2	169	41	20	7	30	1.79
20165467--20165606	54	2.6	53	85	6	138	40	21	7	30	1.80
20165589--20165650	27	2.3	27	88	0	88	40	17	14	27	1.89
20165483--20165633	54	2.8	53	85	4	160	41	20	8	29	1.82
20165483--20165635	81	1.9	81	85	5	211	40	20	8	30	1.82
20166270--20166338	28	2.5	28	95	2	122	43	27	10	18	1.82
20169402--20169472	27	2.6	27	75	4	72	36	26	7	29	1.83
20169456--20169579	27	4.6	27	85	2	169	41	20	7	30	1.79
20169440--20169579	54	2.6	53	85	6	138	40	21	7	30	1.80
20169562--20169623	27	2.3	27	88	0	88	40	17	14	27	1.89
20169456--20169606	54	2.8	53	85	4	160	41	20	8	29	1.82
20169456--20169608	81	1.9	81	85	5	211	40	20	8	30	1.82
20170243--20170301	28	2.1	28	100	0	118	45	25	11	16	1.82
20176626--20176801	23	7.7	23	84	5	221	25	21	24	29	1.99
20176626--20176791	69	2.4	69	92	0	269	24	21	24	28	1.99
20178091--20178204	54	2.1	54	81	0	129	28	18	11	41	1.85
20178104--20178259	54	2.9	54	83	0	177	29	20	9	40	1.84
20178104--20178232	27	4.8	27	86	0	168	27	20	10	42	1.83
20178210--20178567	27	13.2	27	73	8	181	38	20	9	30	1.85
20178104--20178258	81	1.9	81	85	0	211	29	20	9	40	1.84
20178210--20178569	54	6.6	54	74	6	235	38	20	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20178089--20178269	81	2.2	81	78	0	200	32	19	9	38	1.84
20178224--20178456	81	2.9	80	87	2	297	40	21	9	29	1.83
20178224--20178482	81	3.2	81	84	4	285	40	20	9	28	1.84
20178590--20178685	27	3.6	25	82	9	102	37	21	19	20	1.94
20178592--20178673	26	3.1	25	84	8	92	37	23	19	19	1.94
20180114--20180144	2	15.5	2	100	0	62	51	0	0	48	1.00
20183067--20183190	26	4.8	26	89	1	187	26	21	23	28	1.99
20183067--20183190	52	2.4	52	95	1	223	26	21	23	28	1.99
20183333--20183466	42	3.2	42	94	0	223	29	16	20	32	1.95
20183490--20183566	31	2.5	31	91	0	127	31	18	23	27	1.97
20187190--20187255	26	2.5	26	85	9	73	40	7	4	46	1.52
20187206--20187257	26	2.0	25	96	3	95	40	7	5	46	1.57
20201448--20201571	46	2.7	44	83	7	151	29	16	29	25	1.97
20201634--20201766	49	2.7	49	78	6	144	29	21	25	24	1.99
20213743--20213989	55	4.6	55	82	7	255	23	25	17	34	1.95
20216137--20216183	24	2.0	24	86	0	67	31	25	17	25	1.97
20216227--20216265	20	2.0	20	100	0	78	35	12	20	30	1.90
20216316--20216507	24	8.0	24	90	4	289	29	20	22	26	1.99
20221421--20221596	46	3.8	46	77	12	189	21	19	28	29	1.98
20221418--20221588	93	1.8	93	91	0	279	21	20	29	28	1.98
20228015--20228253	55	4.5	54	78	8	251	21	25	17	35	1.95
20232444--20232596	27	5.7	27	85	1	191	26	15	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20232444--20232601	54	2.9	54	84	2	221	25	15	20	38	1.91
20232444--20232601	81	2.0	80	91	1	253	25	15	20	38	1.91
20232668--20232739	24	3.0	24	100	0	144	33	12	16	37	1.86
20238302--20238365	31	2.1	31	90	0	101	23	25	15	35	1.94
20238556--20238651	24	4.0	24	87	4	131	27	22	21	28	1.99
20238701--20238761	20	3.0	20	92	0	104	32	21	11	34	1.89
20238804--20238851	25	1.9	25	86	0	69	25	16	25	33	1.96
20239750--20239832	41	2.0	41	100	0	166	46	14	12	26	1.79
20240842--20240881	20	1.9	22	85	10	57	42	10	0	47	1.37
20244314--20244398	27	3.3	27	63	21	74	31	4	30	32	1.78
20244242--20244562	49	6.5	49	95	0	552	28	9	32	29	1.88
20244665--20244779	37	3.1	37	97	0	221	27	18	32	21	1.97
20247343--20247390	26	1.9	26	87	8	73	50	6	18	25	1.70
20249135--20249196	32	1.9	32	96	0	115	30	0	25	43	1.55
20252415--20252454	21	1.9	21	94	0	71	47	0	20	32	1.50
20252874--20252924	24	2.1	24	85	7	68	17	27	21	33	1.96
20255331--20255427	47	2.1	47	96	0	176	27	16	20	35	1.94
20271181--20271250	28	2.5	28	90	4	106	32	27	12	27	1.93
20278184--20278212	14	2.1	14	100	0	58	44	0	13	41	1.44
20285064--20285137	37	2.0	37	97	0	139	31	10	17	40	1.84
20285392--20285595	40	5.1	40	91	4	274	24	22	28	25	1.99
20285791--20285972	90	2.0	91	98	1	357	28	10	19	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20293689--20293870	40	4.6	39	84	8	228	24	21	28	25	1.99
20293689--20293868	76	2.3	80	86	6	253	25	21	27	25	1.99
20299296--20299476	77	2.3	81	85	7	248	25	27	22	24	2.00
20299294--20299476	40	4.7	40	84	9	243	25	27	21	24	1.99
20304306--20304512	78	2.6	79	83	8	235	25	21	27	26	1.99
20304307--20304496	40	4.8	40	81	10	205	25	21	27	25	1.99
20310177--20310247	29	2.4	29	79	6	81	25	8	19	46	1.78
20310378--20310477	29	3.4	29	80	2	103	34	15	18	33	1.91
20310399--20310492	29	3.2	29	80	5	109	26	13	23	36	1.92
20310399--20310548	58	2.6	58	80	5	162	29	13	22	35	1.92
20315214--20315257	22	2.0	22	86	0	61	52	4	0	43	1.22
20318055--20318114	25	2.4	26	76	15	63	58	1	5	35	1.30
20323808--20323914	54	2.0	54	90	0	169	28	10	23	37	1.88
20326830--20326897	31	2.2	31	97	0	127	13	23	38	25	1.91
20328009--20328127	43	2.8	42	80	9	143	28	22	15	33	1.94
20328443--20328488	16	2.9	16	96	0	83	43	6	10	39	1.66
20350398--20350507	42	2.6	42	80	9	125	30	20	18	30	1.96
20350386--20350507	43	2.9	43	78	9	151	30	21	17	31	1.96
20353130--20353171	21	2.0	20	82	13	50	45	14	7	33	1.72
20354012--20354055	22	2.0	22	86	8	63	54	4	2	38	1.33
20356005--20356189	79	2.3	81	81	7	209	24	27	23	24	2.00
20355986--20356189	40	5.1	40	79	4	198	25	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20358437--20358562	53	2.4	53	90	0	189	21	26	14	37	1.92
20358439--20358562	26	4.7	26	72	3	113	20	26	14	37	1.92
20364598--20364654	28	2.0	28	100	0	114	28	33	7	31	1.84
20369369--20369466	28	3.5	28	94	2	162	33	26	12	27	1.92
20370025--20370056	2	16.0	2	100	0	64	50	0	0	50	1.00
20374698--20374783	30	2.9	30	91	0	136	29	20	15	34	1.93
20383093--20383250	40	4.0	40	79	4	151	26	24	26	22	2.00
20383093--20383280	80	2.3	80	79	12	206	26	23	27	22	2.00
20391163--20391320	40	4.0	40	79	4	151	26	24	26	22	2.00
20391163--20391350	80	2.3	80	79	12	206	26	23	27	22	2.00
20397239--20397296	24	2.5	22	81	13	71	15	8	1	74	1.14
20398931--20398987	29	2.0	29	83	13	73	24	12	12	50	1.74
20403276--20403538	40	6.6	40	90	1	370	22	25	23	28	1.99
20411388--20411648	40	6.6	40	91	1	393	21	26	24	27	1.99
20417002--20417145	39	3.7	39	88	0	225	26	20	29	22	1.99
20425034--20425066	12	2.8	12	100	0	66	24	18	24	33	1.97
20425919--20425994	23	3.4	22	76	10	82	28	19	25	26	1.99
20425913--20425983	22	3.2	21	78	11	79	30	19	23	25	1.98
20429929--20430076	42	3.4	43	75	13	126	27	27	18	27	1.98
20429924--20430080	86	1.8	85	86	4	226	28	28	17	25	1.98
20430173--20430205	16	2.0	17	88	5	50	57	9	3	30	1.45
20435541--20435596	15	3.7	15	88	7	87	12	16	10	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436865--20436994	40	3.2	40	82	4	165	23	28	24	23	2.00
20441893--20441941	17	2.8	18	74	22	50	24	18	22	34	1.96
20442760--20442910	40	3.8	40	82	6	173	26	21	27	24	2.00
20442796--20442926	40	3.3	40	83	4	167	24	21	26	27	1.99
20449833--20450050	39	5.6	40	90	5	331	27	27	22	23	1.99
20453669--20453788	43	2.8	42	79	9	127	30	15	22	31	1.94
20456598--20456727	40	3.2	40	82	2	172	24	27	23	24	2.00
20456614--20456764	40	3.8	39	81	6	153	22	27	23	27	1.99
20456598--20456764	80	2.1	79	83	7	205	23	26	22	26	2.00
20463237--20463388	40	3.8	39	82	6	155	22	26	23	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292