genome.fa.s9.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  170  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50533026--50533136	43	2.6	42	76	8	118	31	17	25	26	1.97
50535201--50535235	17	2.0	18	88	5	54	40	0	20	40	1.52
50541201--50541479	50	5.5	50	78	2	245	31	28	16	24	1.96
50541183--50541479	151	2.0	152	84	1	398	30	27	17	24	1.97
50547522--50547800	50	5.5	50	78	3	245	32	26	15	25	1.95
50547572--50547753	101	1.8	101	87	2	276	30	24	17	27	1.97
50577199--50577245	19	2.5	19	85	0	67	57	0	0	42	0.98
50577608--50577661	26	2.1	26	85	0	72	31	3	3	61	1.31
50579343--50579384	21	2.0	21	81	9	50	30	0	2	66	1.04
50581400--50581444	2	23.0	2	95	4	83	51	0	0	48	1.00
50583672--50583718	25	1.9	26	87	12	73	46	0	0	53	1.00
50584135--50584159	3	8.3	3	100	0	50	68	0	0	32	0.90
50585938--50585976	2	19.5	2	100	0	78	48	0	0	51	1.00
50586381--50586418	20	1.9	20	88	0	58	36	31	13	18	1.89
50591194--50591221	7	4.0	7	100	0	56	57	0	0	42	0.99
50616872--50617261	216	1.8	216	93	0	681	41	13	16	28	1.86
50620665--50620895	98	2.4	98	85	2	329	22	26	21	29	1.99
50620621--50620893	49	5.6	48	73	7	221	23	26	21	28	1.99
50625522--50625570	17	2.8	18	74	22	50	24	18	22	34	1.96
50626388--50626554	40	4.2	40	78	6	160	26	22	26	23	2.00
50633523--50633571	17	2.8	18	74	22	50	24	18	22	34	1.96
50634390--50634556	40	4.2	40	79	6	169	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50638545--50638729	40	4.6	40	86	0	226	27	22	25	24	2.00
50638544--50638771	80	2.8	80	81	2	233	28	23	25	23	2.00
50638548--50638771	40	5.6	39	78	12	161	27	23	25	23	2.00
50641022--50641069	23	2.1	23	100	0	96	37	27	8	27	1.85
50643164--50643390	98	2.3	98	86	1	330	22	26	22	29	1.99
50643120--50643392	49	5.6	49	74	6	223	23	26	21	28	1.99
50643453--50643581	45	2.8	45	81	6	161	21	29	20	28	1.98
50648807--50649053	45	5.4	45	78	3	226	34	14	20	30	1.93
50648807--50649014	89	2.3	89	81	4	251	35	14	20	29	1.92
50650730--50650961	112	2.1	113	95	1	421	25	7	3	62	1.40
50650778--50651006	58	4.0	58	79	9	265	25	7	3	62	1.39
50650885--50650990	27	3.8	29	70	26	77	23	9	1	65	1.32
50650911--50651016	29	3.7	28	71	23	85	22	6	3	66	1.31
50651078--50651128	20	2.6	20	90	3	77	17	3	3	74	1.12
50651075--50651139	23	2.9	22	81	6	76	18	3	3	75	1.07
50652291--50652338	20	2.3	22	82	13	57	35	2	2	60	1.20
50653067--50653134	29	2.4	28	74	13	68	41	1	0	57	1.08
50656872--50657186	169	1.9	169	86	5	451	33	13	8	45	1.73
50659687--50659769	27	3.0	27	80	8	78	36	3	4	55	1.39
50660238--50660276	15	2.6	15	79	0	51	30	5	2	61	1.31
50660688--50660726	17	2.3	17	86	8	53	17	10	0	71	1.12
50660956--50661012	29	2.0	29	82	6	71	22	10	7	59	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50661253--50661282	11	2.7	11	89	0	51	40	0	0	60	0.97
50662412--50662767	197	1.8	197	100	0	712	25	14	10	49	1.76
50674559--50675022	44	10.5	43	69	11	179	34	22	22	20	1.96
50674560--50674809	89	2.8	88	88	3	344	35	22	22	20	1.96
50675130--50675380	87	2.9	87	78	8	249	35	21	23	20	1.96
50677025--50677066	15	2.8	15	81	0	57	30	4	2	61	1.29
50678934--50678981	15	3.3	14	80	8	60	37	0	10	52	1.36
50684509--50684539	16	1.9	16	93	0	53	29	0	9	61	1.28
50687560--50687772	106	2.0	106	85	5	288	38	12	17	32	1.87
50689286--50689331	24	1.9	24	82	8	58	17	8	8	65	1.45
50690239--50690265	6	4.5	6	100	0	54	14	0	0	85	0.61
50693556--50693610	24	2.3	24	75	6	58	25	3	45	25	1.70
50693660--50693690	15	2.0	16	93	6	55	45	0	29	25	1.54
50694503--50694545	13	3.1	14	84	12	54	60	0	0	39	0.97
50695424--50695469	17	2.7	17	86	0	65	50	8	8	32	1.64
50696074--50696105	15	2.0	17	88	11	50	62	6	0	31	1.20
50697792--50697958	91	1.8	91	85	2	237	34	20	19	25	1.96
50698062--50698275	74	2.9	73	81	6	254	30	19	16	34	1.94
50698136--50698441	164	1.9	163	87	2	452	33	17	15	33	1.92
50698300--50698532	74	3.1	74	83	3	299	34	18	15	32	1.92
50697891--50699316	238	6.0	238	82	10	1338	32	18	16	32	1.93
50698527--50699159	73	8.1	74	75	15	442	32	19	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50698685--50699153	79	6.0	78	82	9	483	31	19	15	32	1.94
50699082--50699248	90	1.9	90	92	2	282	34	18	15	31	1.92
50699170--50699329	76	2.1	74	89	4	250	33	18	16	31	1.94
50698527--50699318	245	3.3	239	79	10	899	32	19	16	32	1.94
50700181--50700214	11	3.1	11	84	16	52	0	17	0	82	0.67
50707640--50707674	4	8.8	4	93	0	61	45	2	25	25	1.67
50707644--50707683	8	5.0	8	93	0	53	40	7	25	27	1.82
50709547--50709591	17	2.6	18	89	10	76	51	8	8	31	1.64
50710200--50710231	15	2.0	17	88	11	50	62	6	0	31	1.20
50710744--50710784	11	3.9	11	75	12	50	65	0	34	0	0.93
50711234--50711272	20	2.0	20	100	0	78	2	0	41	56	1.13
50716257--50716299	19	2.3	19	84	11	61	32	6	0	60	1.23
50717357--50717432	24	3.2	24	76	9	75	52	2	3	40	1.34
50717682--50717712	15	2.1	15	93	0	53	51	0	16	32	1.44
50718557--50718586	15	2.0	15	100	0	60	26	13	26	33	1.93
50719828--50719906	34	2.3	35	82	10	92	31	6	13	48	1.68
50720470--50720510	17	2.4	17	91	0	64	43	0	29	26	1.55
50720479--50720513	17	2.1	17	100	0	70	42	0	28	28	1.56
50723218--50723368	76	2.0	76	98	0	293	19	16	15	47	1.82
50724848--50724887	19	2.1	19	100	0	80	27	5	15	52	1.63
50726140--50726178	20	2.0	20	84	0	51	12	12	23	51	1.74
50727541--50727598	28	2.1	28	100	0	116	27	34	24	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50728356--50728511	42	3.7	42	80	1	161	44	15	23	16	1.85
50728381--50728447	21	3.2	21	68	8	64	43	14	25	16	1.86
50728437--50728489	21	2.5	21	71	0	52	49	15	18	16	1.80
50732212--50732267	26	2.2	25	81	6	67	50	0	3	46	1.19
50732238--50732307	35	1.9	36	82	5	88	48	4	0	47	1.21
50746335--50746377	21	2.0	21	90	0	68	23	20	11	44	1.84
50749315--50749466	51	2.9	50	75	14	121	60	7	5	26	1.45
50751463--50751522	30	2.0	30	90	0	93	30	25	5	40	1.77
50752788--50752868	24	3.4	24	79	3	101	33	12	22	32	1.91
50753017--50753043	2	13.5	2	100	0	54	51	0	0	48	1.00
50754994--50755034	20	2.0	20	100	0	82	29	24	9	36	1.87
50757733--50757810	37	2.1	37	86	6	106	30	12	11	44	1.78
50759376--50759401	4	6.5	4	100	0	52	23	0	0	76	0.78
50760519--50760544	2	13.0	2	100	0	52	50	0	0	50	1.00
50763520--50763629	38	2.8	39	76	6	116	30	28	20	20	1.98
50764241--50764276	18	2.1	18	89	5	56	33	25	0	41	1.55
50764702--50764745	18	2.4	18	85	7	54	13	6	4	75	1.17
50764715--50764758	23	1.9	23	81	9	54	20	6	4	68	1.31
50764749--50764803	18	3.2	17	74	23	53	49	3	0	47	1.19
50765206--50765253	20	2.4	20	74	22	55	43	18	0	37	1.51
50771979--50772027	17	2.8	18	74	22	50	24	18	22	34	1.96
50772850--50773000	40	3.8	40	79	6	155	26	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50772886--50773016	40	3.3	40	79	4	149	24	22	26	25	2.00
50785592--50785630	19	2.2	19	86	9	55	30	28	0	41	1.57
50790288--50790430	42	3.3	42	82	8	164	32	25	16	25	1.96
50790309--50790427	44	2.8	41	82	8	141	31	28	15	24	1.96
50793504--50793711	53	4.0	52	79	10	228	26	23	13	36	1.92
50793497--50793686	106	1.8	103	87	5	283	25	23	13	37	1.92
50793497--50793707	103	2.0	104	85	4	282	26	22	13	37	1.91
50798371--50798488	41	3.1	41	60	28	98	32	17	28	21	1.96
50798339--50798502	71	2.3	71	100	0	328	35	17	28	18	1.94
50805063--50805180	41	3.1	41	60	28	98	32	17	28	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292