genome.fa.s9.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  209  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61908350--61908408	25	2.4	25	79	0	64	35	3	3	57	1.32
61908440--61908498	25	2.5	24	78	10	68	33	8	6	50	1.59
61908456--61908504	25	2.0	25	91	0	80	34	8	6	51	1.57
61908659--61908706	16	3.1	15	90	6	69	31	2	2	64	1.16
61908659--61908710	8	6.5	8	82	8	61	30	1	1	65	1.14
61915516--61915659	72	2.0	71	90	1	225	22	16	22	38	1.93
61915592--61916079	140	3.5	140	95	1	870	25	16	20	37	1.93
61915917--61915950	13	2.5	13	90	4	50	20	11	8	58	1.59
61916085--61916225	72	2.0	72	98	0	273	33	16	17	32	1.92
61916179--61916275	51	1.9	50	85	4	133	28	18	20	31	1.96
61916231--61916632	77	5.2	74	82	8	466	29	17	21	30	1.96
61916231--61916638	151	2.6	150	87	6	525	29	18	21	30	1.97
61917296--61917359	19	3.4	19	69	18	62	75	15	6	3	1.14
61917286--61917359	36	2.1	34	92	5	121	77	13	6	2	1.08
61918014--61918091	2	40.5	2	74	16	58	39	2	2	55	1.27
61918020--61918077	25	2.4	24	79	2	62	36	3	3	56	1.33
61918114--61918172	25	2.5	24	78	10	68	33	8	6	50	1.59
61918130--61918178	25	2.0	25	91	0	80	34	8	6	51	1.57
61918333--61918380	16	3.1	15	90	6	69	31	2	2	64	1.16
61918333--61918384	8	6.5	8	82	8	61	30	1	1	65	1.14
61919073--61919123	10	5.2	9	78	21	50	35	0	1	62	1.06
61919073--61919123	20	2.5	21	81	15	63	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61927402--61927438	18	2.0	19	89	5	58	21	8	5	64	1.40
61927401--61927438	19	2.0	19	90	10	60	21	7	5	65	1.38
61928224--61928291	31	2.3	29	81	18	88	47	16	4	32	1.66
61937372--61937430	31	1.9	30	82	3	73	28	13	15	42	1.85
61942172--61942274	51	2.0	51	94	0	179	37	14	19	28	1.91
61943603--61943669	35	1.9	34	90	3	107	32	14	4	47	1.65
61944709--61944823	27	4.3	26	87	5	149	36	23	23	16	1.94
61944709--61944823	54	2.1	54	88	3	169	36	23	23	16	1.94
61946440--61946549	26	4.2	26	92	2	168	36	23	4	35	1.76
61948790--61948867	31	2.5	31	81	6	88	23	15	29	32	1.95
61950862--61951186	164	2.0	166	85	4	451	27	12	20	40	1.88
61956537--61956612	39	1.9	40	97	2	145	51	7	18	22	1.72
61960322--61960385	32	2.0	32	96	0	119	21	37	7	32	1.83
61963177--61963288	55	2.0	55	98	0	215	30	15	18	35	1.92
61964503--61964561	16	3.9	15	79	18	68	49	1	6	42	1.39
61967255--61967289	18	1.9	18	100	0	70	40	11	11	37	1.77
61967634--61967740	36	3.0	36	98	0	205	33	18	18	28	1.95
61967879--61967906	14	2.0	14	100	0	56	57	0	7	35	1.26
61967853--61967910	20	2.9	20	78	14	66	55	0	8	36	1.31
61968436--61968479	19	2.3	19	84	0	61	40	22	20	15	1.90
61974876--61974905	14	2.1	14	100	0	60	36	16	13	33	1.88
61976012--61976072	28	2.2	28	94	2	106	52	13	18	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61976443--61976495	24	2.3	23	83	3	61	30	1	5	62	1.29
61979397--61979435	20	2.0	20	94	0	69	48	2	0	48	1.15
61982773--61982851	16	4.9	16	71	3	68	34	34	8	22	1.85
61995286--61995313	9	3.1	9	100	0	56	21	0	14	64	1.29
61997497--61997563	24	2.8	24	90	2	107	40	19	23	16	1.91
62002296--62002489	39	4.9	39	89	0	262	23	32	21	22	1.98
62004144--62004251	45	2.4	45	80	0	126	43	17	17	21	1.88
62004235--62004266	6	5.3	6	92	0	55	46	15	18	18	1.84
62009500--62009553	23	2.3	23	96	3	99	38	24	0	37	1.56
62012647--62012699	20	2.5	21	75	12	54	50	3	0	45	1.19
62013145--62013192	20	2.4	20	74	22	55	39	18	4	37	1.70
62015516--62015555	14	2.9	14	88	0	62	40	0	2	57	1.12
62015758--62015857	49	2.0	49	100	0	200	39	6	25	30	1.79
62018351--62018385	17	2.1	17	94	0	61	31	2	0	65	1.07
62020222--62021010	222	3.5	221	77	10	705	21	14	17	46	1.84
62023747--62023793	24	2.1	22	84	11	60	51	12	0	36	1.40
62037151--62037207	27	2.1	28	81	12	66	43	1	8	45	1.45
62047737--62047766	15	2.0	15	93	0	51	40	6	10	43	1.64
62050540--62050603	33	1.9	33	96	0	119	18	14	12	54	1.70
62051069--62051117	22	2.2	22	89	7	73	46	4	2	46	1.33
62055261--62055322	3	20.0	3	77	6	61	32	1	6	59	1.32
62055264--62055325	23	2.8	22	87	4	81	32	1	8	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62055259--62055333	23	3.2	23	80	10	64	32	2	9	56	1.45
62055263--62055322	26	2.3	26	85	8	77	31	1	6	60	1.33
62055653--62055707	19	2.9	19	87	12	71	41	3	0	54	1.18
62055675--62055751	25	3.2	24	79	18	72	37	5	2	54	1.37
62055651--62055785	63	2.2	63	78	14	147	37	6	2	54	1.39
62059310--62059349	2	20.0	2	100	0	80	50	0	0	50	1.00
62061294--62061325	5	6.2	5	96	3	55	78	0	0	21	0.76
62062245--62062330	30	2.9	29	75	5	82	52	9	1	37	1.41
62062256--62062329	29	2.4	30	82	6	87	51	10	1	36	1.46
62067423--62067549	65	2.0	65	85	3	175	37	11	11	40	1.77
62067883--62067933	21	2.5	21	80	3	59	25	15	9	49	1.75
62070873--62070912	11	3.6	11	79	0	53	20	12	10	57	1.63
62070949--62071012	30	2.1	31	88	8	96	31	4	7	56	1.49
62076019--62076079	31	2.0	31	83	0	77	39	9	8	42	1.68
62080505--62080576	38	2.0	35	83	8	90	61	2	1	34	1.19
62083310--62083453	44	3.3	44	68	11	123	29	26	18	25	1.98
62083239--62083568	88	3.8	88	88	0	491	28	25	19	26	1.99
62084997--62085043	23	2.0	23	87	0	67	27	6	0	65	1.16
62085453--62085495	18	2.6	16	81	7	50	11	13	4	69	1.33
62085639--62085772	3	44.7	3	72	16	91	29	7	0	62	1.27
62085644--62085739	20	4.8	20	76	12	81	30	7	1	61	1.30
62089962--62090085	60	2.0	61	96	1	232	56	10	0	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62089971--62090064	30	3.1	30	66	22	88	54	10	0	35	1.35
62090606--62090642	17	2.3	17	86	9	51	64	0	0	35	0.94
62092129--62092182	18	3.1	18	84	12	60	27	0	3	68	1.06
62093901--62093953	26	2.0	27	85	7	74	24	15	22	37	1.92
62095436--62095569	26	5.2	26	92	3	218	36	24	5	33	1.78
62095436--62095569	50	2.6	52	95	2	236	36	24	5	33	1.78
62099711--62099763	26	2.0	27	85	7	74	24	15	22	37	1.92
62101245--62101379	26	5.2	26	90	1	218	37	23	5	34	1.77
62103029--62103092	3	21.3	3	100	0	128	32	0	0	67	0.91
62103333--62103420	38	2.4	35	79	7	95	36	4	7	51	1.52
62104236--62104265	9	3.2	9	95	4	51	43	0	3	53	1.17
62116252--62116322	32	2.2	32	97	0	133	54	15	19	9	1.68
62116578--62116612	14	2.5	14	85	0	52	17	14	5	62	1.49
62116519--62116734	88	2.5	88	91	1	337	27	18	20	34	1.95
62116688--62116899	54	3.9	54	92	3	354	28	15	18	37	1.91
62118215--62118246	10	3.2	10	95	0	55	46	9	12	31	1.73
62118242--62118351	26	4.2	26	95	0	193	33	4	24	37	1.76
62121988--62122054	15	4.3	15	83	12	66	28	0	4	67	1.10
62122008--62122050	3	14.3	3	100	0	86	32	0	0	67	0.91
62122290--62122372	38	2.3	35	81	6	94	34	4	8	51	1.53
62148353--62148455	28	3.5	28	71	21	93	25	22	29	23	1.99
62148345--62148489	61	2.4	61	86	8	188	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62152606--62152773	40	4.2	40	83	3	223	22	22	27	26	1.99
62155530--62155555	12	2.2	12	100	0	52	7	15	30	46	1.74
62155673--62155911	114	2.1	115	83	2	293	32	22	19	25	1.97
62155787--62156067	155	1.8	154	84	2	384	30	22	19	27	1.98
62156587--62156636	14	3.8	14	74	15	61	44	14	26	16	1.85
62156785--62156859	7	10.7	7	73	11	55	17	0	33	49	1.47
62156979--62157020	21	2.0	22	85	4	59	19	0	40	40	1.51
62156989--62157034	14	3.3	14	81	0	65	15	0	41	43	1.46
62159711--62159750	21	1.9	21	94	0	71	17	40	12	30	1.86
62160603--62160665	2	31.5	2	100	0	126	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292