genome.fa.s9.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  155  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46180478--46180549	30	2.4	30	77	15	76	47	2	1	48	1.25
46180530--46180559	15	2.0	15	93	0	51	66	3	0	30	1.07
46185589--46185664	37	2.1	37	100	0	152	18	28	7	44	1.78
46193805--46193899	29	3.2	29	72	19	95	49	10	14	25	1.75
46193813--46193968	58	2.6	61	86	5	221	50	10	14	24	1.74
46193816--46193966	31	5.2	26	72	14	95	51	9	15	23	1.73
46194127--46194244	57	2.1	57	98	0	227	27	11	8	52	1.65
46194715--46194754	3	13.3	3	100	0	80	65	0	0	35	0.93
46197135--46197179	22	2.0	22	100	0	90	31	8	13	46	1.74
46205515--46205573	26	2.3	26	84	0	73	32	8	13	45	1.74
46205721--46205751	6	5.2	6	100	0	62	16	16	0	67	1.23
46213161--46213240	29	2.7	29	86	5	108	27	32	15	25	1.95
46221064--46221143	29	2.7	29	86	5	108	27	32	15	25	1.95
46226688--46226873	101	1.9	101	91	1	311	30	25	19	24	1.98
46230522--46230551	2	15.0	2	92	0	51	50	3	0	46	1.18
46232447--46232492	22	2.1	22	100	0	92	32	19	21	26	1.97
46237007--46237041	17	2.1	17	89	5	54	57	0	5	37	1.23
46240722--46240799	21	3.7	21	69	6	59	17	28	35	17	1.94
46241489--46241521	15	2.2	15	89	10	50	84	0	0	15	0.61
46244247--46244359	56	2.0	56	91	0	181	52	15	8	23	1.70
46245715--46245746	13	2.3	15	89	10	50	25	0	6	68	1.12
46245804--46245829	13	2.0	13	100	0	52	30	23	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46246258--46246294	13	2.8	13	100	0	74	59	0	0	40	0.97
46251086--46251208	47	2.6	48	81	6	128	30	18	27	23	1.98
46253813--46254116	94	3.2	92	80	8	306	28	18	27	25	1.98
46253813--46253980	46	3.6	45	75	10	144	27	16	29	25	1.97
46253850--46254113	48	5.5	48	74	8	214	28	18	28	25	1.98
46261191--46261247	30	1.9	30	88	0	87	31	7	28	33	1.84
46261589--46261798	48	4.5	46	76	9	167	30	18	27	23	1.98
46261584--46261798	46	4.6	48	74	11	176	31	18	26	23	1.97
46266244--46266284	21	2.0	21	90	9	66	0	51	19	29	1.47
46271813--46271845	9	3.7	9	91	0	57	36	0	18	45	1.49
46271782--46271846	31	2.1	31	82	5	78	35	0	16	47	1.47
46271813--46271852	18	2.4	17	91	8	64	35	0	17	47	1.48
46271978--46272118	9	15.7	9	65	24	66	38	2	14	44	1.60
46271983--46272092	30	3.6	30	73	13	100	38	3	14	43	1.63
46272016--46272102	16	5.6	16	73	5	79	37	3	14	43	1.63
46271986--46272102	62	1.9	62	92	0	198	37	3	14	44	1.62
46272217--46272700	99	4.9	99	92	4	787	51	3	6	37	1.47
46272615--46272805	62	3.2	60	74	11	196	55	2	5	36	1.36
46272674--46272717	19	2.4	19	96	3	81	68	0	0	31	0.90
46272575--46272805	116	2.0	118	90	3	369	53	3	6	37	1.41
46275740--46275765	12	2.2	12	100	0	52	50	23	7	19	1.73
46278650--46278735	40	2.2	40	80	0	100	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46278891--46279011	40	3.0	40	87	0	170	23	23	20	33	1.98
46278681--46278956	117	2.4	116	85	3	365	26	21	19	32	1.97
46278905--46279022	40	3.0	40	88	0	173	23	22	20	33	1.97
46278904--46279038	40	3.4	39	82	4	153	26	21	20	31	1.98
46278887--46279055	80	2.1	80	78	6	180	23	21	20	33	1.97
46279033--46279114	41	2.0	41	85	4	112	18	25	19	36	1.94
46288835--46288889	22	2.5	22	82	5	76	12	27	34	25	1.92
46293673--46293723	21	2.4	21	93	0	84	15	5	49	29	1.68
46295833--46295919	43	2.0	43	97	0	165	18	17	11	52	1.73
46299284--46299461	27	6.6	27	86	0	221	37	20	19	23	1.94
46299567--46299597	16	1.9	16	93	0	53	29	19	16	35	1.93
46302946--46303047	28	3.5	29	81	6	109	28	27	14	29	1.95
46310827--46310928	28	3.5	29	81	6	109	28	27	14	29	1.95
46314612--46314649	19	2.0	20	89	5	60	44	13	2	39	1.57
46322007--46322057	20	2.5	21	78	15	63	45	13	0	41	1.44
46327595--46327672	15	5.4	15	77	13	83	10	17	12	58	1.61
46327586--46327668	28	2.9	28	82	10	96	10	16	15	56	1.66
46330143--46330214	36	2.0	36	100	0	144	22	22	30	25	1.99
46338515--46338661	10	16.0	9	71	23	103	60	2	2	34	1.22
46338515--46338661	19	8.0	18	72	22	103	60	2	2	34	1.22
46338589--46338657	34	2.1	32	84	15	88	57	0	2	39	1.13
46340864--46340932	31	2.2	31	86	0	93	44	10	7	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46347077--46347157	38	2.1	38	95	0	153	43	18	3	34	1.68
46347777--46347932	42	3.7	42	85	4	215	30	25	14	30	1.94
46353162--46353397	126	1.9	125	87	1	348	23	25	25	25	2.00
46355184--46355230	18	2.3	21	75	20	55	44	2	2	51	1.25
46358728--46358779	25	2.1	24	86	10	70	46	0	5	48	1.26
46376435--46376567	29	4.6	29	80	1	151	25	20	21	32	1.98
46376482--46376555	14	5.1	14	68	12	51	22	20	24	32	1.98
46376520--46376628	44	2.5	43	81	1	128	23	16	22	37	1.93
46376564--46376648	29	3.0	29	75	5	93	28	15	22	34	1.94
46376491--46376630	73	1.9	73	91	0	226	25	17	22	35	1.95
46376784--46376873	37	2.4	37	83	0	108	36	24	22	16	1.94
46381072--46381259	40	4.7	40	89	3	290	25	27	22	25	2.00
46381039--46381258	119	1.8	119	87	5	329	24	26	22	25	2.00
46384988--46385164	39	4.5	39	85	2	196	26	22	25	24	2.00
46384981--46385206	79	2.9	77	77	7	213	27	23	26	23	2.00
46385066--46385232	79	2.1	80	80	4	178	28	23	25	22	2.00
46392278--46392495	40	5.4	40	89	2	287	27	24	25	22	2.00
46392243--46392467	120	1.9	121	85	2	319	27	23	25	24	2.00
46392244--46392495	120	2.1	121	82	3	303	27	24	25	23	2.00
46392288--46392521	40	5.8	41	86	6	194	27	24	25	22	2.00
46392271--46392535	80	3.3	80	82	5	313	28	23	24	22	1.99
46396121--46396278	40	4.0	40	79	4	151	26	24	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46396121--46396308	80	2.3	80	79	12	206	26	23	27	22	2.00
46399672--46399870	51	3.9	51	90	1	319	30	25	12	32	1.92
46402874--46402973	49	2.0	49	100	0	200	51	20	10	19	1.75
46406161--46406409	51	4.9	51	89	1	383	28	25	14	31	1.94
46406445--46406490	24	1.9	24	95	0	83	19	21	19	39	1.93
46408596--46408620	13	1.9	13	100	0	50	4	40	24	32	1.73
46415879--46415934	20	2.9	20	82	12	64	44	8	16	30	1.78
46415985--46416146	26	6.3	26	90	3	242	29	20	22	27	1.99
46419232--46419281	23	2.2	23	85	0	64	28	20	18	34	1.95
46419303--46419366	24	2.6	24	85	2	83	31	23	10	34	1.89
46426443--46426505	23	2.6	24	82	7	83	33	23	7	34	1.84
46427727--46427763	19	1.9	19	88	0	56	32	2	5	59	1.34
46430820--46430960	67	2.1	67	85	0	192	30	26	21	21	1.98
46432034--46432118	9	9.9	9	75	14	72	38	11	7	42	1.69
46432034--46432118	43	2.0	43	83	0	107	38	11	7	42	1.69
46432491--46432532	20	2.1	20	82	8	50	42	14	0	42	1.45
46434093--46434300	46	4.5	46	83	11	246	26	20	29	23	1.98
46434084--46434356	94	2.9	92	80	11	265	27	20	29	23	1.99
46434093--46434355	140	1.9	141	82	8	340	26	20	29	23	1.99
46440858--46440901	21	2.1	21	95	0	79	34	22	4	38	1.75
46441673--46441949	46	5.9	47	77	9	212	29	19	29	22	1.98
46441686--46441948	47	5.6	47	75	11	177	30	19	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46441686--46441949	140	1.9	140	81	7	320	29	19	28	21	1.98
46443553--46443586	2	17.0	2	100	0	68	50	0	0	50	1.00
46444059--46444159	28	3.5	28	86	6	114	28	13	27	29	1.95
46444088--46444159	29	2.5	28	91	6	110	29	13	27	29	1.95
46451368--46451392	2	12.5	2	100	0	50	48	0	0	52	1.00
46451865--46451965	28	3.5	28	86	6	114	28	13	27	29	1.95
46451894--46451965	29	2.5	28	91	6	110	29	13	27	29	1.95
46453618--46453718	41	2.4	42	91	1	168	14	22	37	24	1.92
46456681--46456721	20	2.0	20	85	0	55	41	14	0	43	1.45
46458361--46458424	32	2.0	32	96	0	119	42	3	14	40	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292