genome.fa.s9.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  102  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31238593--31238781	80	2.4	80	77	5	184	25	22	28	23	1.99
31242576--31242658	27	3.0	27	82	8	96	30	22	15	31	1.95
31242589--31242658	27	2.6	27	93	2	113	30	25	14	30	1.95
31248610--31248856	40	6.2	40	76	13	219	23	22	27	25	2.00
31248649--31248833	79	2.3	80	88	0	264	23	22	27	26	2.00
31248650--31248856	79	2.6	79	82	6	249	23	22	27	26	2.00
31250413--31250685	40	6.8	40	94	1	474	27	27	22	23	1.99
31250382--31250685	81	3.8	81	92	3	492	27	26	22	23	1.99
31253883--31253974	42	2.2	42	92	0	148	27	18	20	33	1.96
31257664--31258010	47	7.4	47	90	0	516	31	8	31	28	1.86
31257664--31258010	140	2.5	141	92	0	552	31	8	31	28	1.86
31259861--31260331	40	11.8	40	88	1	660	22	21	29	26	1.99
31264270--31264617	47	7.4	47	91	0	536	32	8	31	28	1.86
31266471--31267021	40	13.8	40	87	2	741	22	20	30	26	1.98
31270963--31271309	47	7.4	47	90	0	523	31	8	30	28	1.87
31285922--31285955	16	2.2	15	89	5	50	44	0	0	55	0.99
31291462--31291638	46	3.8	45	77	13	155	26	20	31	21	1.98
31298638--31298682	23	2.0	23	86	4	65	20	22	20	37	1.94
31302038--31302114	40	1.9	40	89	5	120	44	19	9	27	1.81
31303947--31304002	27	2.1	27	100	0	112	23	17	25	33	1.96
31304739--31305135	202	2.0	202	95	0	713	25	11	21	40	1.88
31308269--31308351	6	13.8	6	80	14	100	51	14	14	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31308248--31308345	30	3.3	29	81	11	117	51	14	15	19	1.77
31308469--31308534	27	2.5	26	82	7	78	39	22	21	16	1.92
31312563--31312645	27	3.1	26	87	5	103	37	20	22	19	1.94
31312873--31313031	27	5.9	27	86	2	221	24	20	18	36	1.95
31312844--31313039	54	3.6	53	86	1	257	26	19	18	36	1.94
31312863--31313039	81	2.2	81	84	2	230	24	18	19	37	1.94
31313048--31313426	27	14.0	27	85	5	432	40	9	22	27	1.84
31313048--31313426	81	4.7	81	84	7	484	40	9	22	27	1.84
31315442--31315549	6	17.8	6	77	12	114	48	13	18	19	1.81
31315421--31315554	30	4.4	29	79	10	126	48	13	18	19	1.81
31315667--31315732	27	2.5	26	85	7	87	37	22	22	16	1.93
31315667--31315740	27	2.8	27	78	13	82	36	21	24	17	1.95
31315691--31315748	27	2.1	27	84	6	73	36	27	20	15	1.93
31315905--31315963	22	2.7	22	81	0	64	32	22	25	20	1.98
31316054--31316133	27	3.0	26	89	7	108	33	21	25	20	1.97
31316332--31316518	27	7.0	27	82	1	214	24	20	18	35	1.95
31316351--31316518	80	2.1	81	86	1	230	23	20	19	36	1.95
31316535--31316912	27	14.0	27	82	7	387	41	10	21	26	1.85
31316535--31316912	54	7.0	54	84	3	458	41	10	21	26	1.85
31316535--31316912	81	4.7	81	85	6	489	41	10	21	26	1.85
31319324--31319418	27	3.5	27	78	2	102	29	7	21	42	1.80
31319713--31319810	29	3.4	29	83	2	128	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31326737--31327164	47	9.1	47	88	0	624	33	12	28	26	1.92
31326740--31327155	141	3.0	141	96	0	744	33	12	28	26	1.92
31327045--31327120	25	3.2	25	63	30	65	30	14	32	22	1.94
31329116--31329266	77	1.9	78	93	2	259	23	20	31	23	1.98
31329115--31329266	39	3.9	39	91	2	243	23	20	32	23	1.98
31329116--31329297	39	4.7	40	88	2	237	23	21	31	23	1.98
31333851--31333973	37	3.3	37	98	0	237	23	31	19	25	1.98
31334018--31334526	48	10.6	48	98	0	984	31	27	8	33	1.86
31336035--31336059	13	1.9	13	100	0	50	36	16	16	32	1.90
31338205--31338498	40	7.6	40	82	9	261	26	28	20	24	1.99
31340419--31340574	37	4.2	37	99	0	303	23	32	18	25	1.97
31340622--31341082	48	9.6	48	97	0	870	31	27	8	33	1.86
31340622--31341082	239	1.9	240	98	0	888	31	27	8	33	1.86
31340622--31341082	191	2.4	190	97	0	841	31	27	8	33	1.86
31342591--31342615	13	1.9	13	100	0	50	36	16	16	32	1.90
31348139--31348251	39	2.9	39	90	1	172	22	20	32	24	1.98
31348139--31348282	39	3.6	39	86	0	171	22	21	31	23	1.98
31349688--31349826	37	3.8	37	89	0	197	25	17	32	24	1.97
31360961--31361002	23	1.9	22	90	9	68	16	4	50	28	1.66
31361038--31361121	40	2.1	40	80	12	93	27	17	23	30	1.97
31364433--31364493	25	2.4	25	82	15	81	26	24	18	31	1.97
31371130--31371161	16	2.0	16	93	0	55	15	6	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31374337--31374398	31	2.1	30	82	17	76	45	8	16	30	1.76
31378992--31379040	26	1.9	25	87	4	71	26	4	20	48	1.67
31379122--31379187	24	2.6	26	83	9	82	22	0	30	46	1.52
31379394--31379450	26	2.2	26	78	3	71	59	1	0	38	1.08
31381935--31381971	3	12.3	3	100	0	74	67	0	0	32	0.91
31384528--31384593	24	2.7	25	81	6	91	31	21	25	21	1.98
31384788--31384815	13	2.2	13	100	0	56	42	7	7	42	1.59
31393434--31393459	2	13.0	2	100	0	52	50	0	0	50	1.00
31394087--31394134	7	6.9	7	86	9	71	54	2	0	43	1.12
31394087--31394134	22	2.3	20	92	7	78	54	2	0	43	1.12
31396237--31396277	19	2.2	19	86	8	57	21	21	26	29	1.99
31396227--31396263	19	1.9	19	88	0	56	24	16	27	32	1.96
31402518--31402632	37	3.1	37	91	2	169	24	31	18	26	1.97
31402666--31403145	48	10.0	48	88	0	692	28	27	8	35	1.85
31402666--31403145	144	3.3	144	98	0	915	28	27	8	35	1.85
31407174--31407525	40	8.8	40	91	0	542	25	26	20	26	1.99
31408756--31408863	37	2.9	37	92	0	180	23	32	20	24	1.98
31408908--31409475	48	12.0	48	88	2	828	29	27	7	35	1.85
31408908--31409475	144	4.0	144	96	1	1008	29	27	7	35	1.85
31413502--31413813	40	7.8	40	90	0	462	25	26	20	26	1.99
31415044--31415151	37	2.9	37	92	0	180	23	32	20	24	1.98
31415196--31415673	48	10.0	48	87	0	681	28	27	8	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31415196--31415673	144	3.3	144	97	0	888	28	27	8	35	1.85
31428487--31428521	16	2.3	16	90	9	56	42	2	5	48	1.41
31436658--31437021	47	7.7	48	75	14	242	25	28	18	27	1.98
31436653--31437070	47	8.9	47	74	13	231	25	27	18	27	1.98
31436754--31436885	50	2.7	47	84	10	151	25	29	18	26	1.98
31436897--31437067	46	3.7	45	76	6	162	24	28	16	30	1.97
31443278--31443317	21	2.0	20	90	5	62	17	27	40	15	1.89
31444490--31444617	48	2.6	51	80	8	156	22	32	18	26	1.97
31444590--31444713	48	2.7	45	81	13	121	24	29	17	29	1.97
31450080--31450152	24	3.2	24	63	28	59	46	4	10	38	1.58
31450078--31450163	44	2.0	44	92	0	145	48	3	9	38	1.52
31450153--31450187	18	1.9	18	88	11	54	51	2	0	45	1.16
31451105--31451142	13	3.0	13	80	3	51	42	0	2	55	1.14
31451789--31451898	55	2.0	55	98	0	211	39	9	11	40	1.74
31454678--31454732	24	2.3	24	83	0	65	20	25	20	34	1.96
31458459--31458485	14	1.9	14	100	0	54	51	0	11	37	1.37
31463079--31463208	40	3.2	40	83	2	172	22	23	29	24	1.99
31468314--31468352	2	19.5	2	100	0	78	51	0	0	48	1.00
31479471--31479562	42	2.2	42	92	0	148	34	21	14	29	1.93
31479704--31479824	25	4.8	26	86	5	169	28	23	23	25	2.00
31479704--31479824	50	2.4	50	93	5	201	28	23	23	25	2.00
31480604--31480663	27	2.2	27	88	5	86	18	25	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31480714--31480969	27	9.6	27	74	7	146	32	9	19	39	1.83
31480804--31480955	79	1.9	79	86	2	216	30	7	19	42	1.78
31480800--31481062	54	5.0	52	74	10	176	33	7	20	39	1.80
31480805--31481062	27	9.7	27	78	5	159	32	7	20	39	1.80
31483432--31483469	20	1.9	20	88	0	58	34	2	10	52	1.50
31485098--31485166	28	2.5	28	95	2	122	43	27	10	18	1.82
31491442--31491479	20	1.9	20	88	0	58	34	2	10	52	1.50
31493100--31493168	28	2.5	28	95	2	122	43	27	10	18	1.82
31494603--31494681	25	3.3	25	66	16	67	31	30	5	32	1.79
31494553--31494916	49	7.3	48	87	7	455	29	29	8	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292