Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  237  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68868339--68868376
18
2.1
19
95
5
69
23
0
0
76
0.79
68868425--68868477
20
2.6
20
85
14
65
37
1
0
60
1.08
68868440--68868525
19
4.2
20
72
25
72
38
2
0
59
1.10
68868422--68868477
21
2.7
21
79
15
64
37
1
0
60
1.07
68868534--68868567
15
2.3
15
100
0
68
44
0
0
55
0.99
68868777--68868802
4
6.5
4
100
0
52
23
0
0
76
0.78
68868855--68868912
31
1.9
31
92
3
100
34
0
1
63
1.04
68868843--68868883
20
2.0
22
90
9
68
39
0
0
60
0.96
68868844--68868960
53
2.2
54
79
10
125
42
0
0
55
1.11
68869302--68869334
14
2.3
15
94
5
59
57
0
0
42
0.98
68869392--68869444
20
2.6
21
88
8
74
60
1
1
35
1.19
68869499--68869538
4
9.5
4
84
10
53
75
0
2
22
0.93
68869502--68869538
13
2.8
13
95
0
65
75
0
2
21
0.92
68869493--68869538
17
2.6
17
83
10
58
73
0
2
23
0.94
68901249--68901351
44
2.3
45
84
3
127
31
21
13
33
1.92
68901271--68901356
46
1.9
44
90
4
136
29
24
13
32
1.94
68902495--68902519
12
2.1
12
100
0
50
16
0
0
84
0.63
68904334--68904366
14
2.3
15
89
5
50
42
3
3
51
1.32
68905018--68905069
24
2.2
24
83
10
63
55
0
3
40
1.18
68907244--68907310
26
2.6
26
79
9
84
53
0
2
43
1.16
68907498--68907528
14
2.1
15
94
5
55
32
0
3
64
1.09
68909053--68909116
32
2.0
32
100
0
128
34
6
18
40
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68913830--68913868
14
2.7
15
84
15
55
10
25
0
64
1.25
68913849--68913885
19
1.9
19
88
0
56
8
24
0
67
1.17
68919276--68919305
14
2.1
14
93
0
51
66
3
0
30
1.07
68920803--68920833
6
5.2
6
100
0
62
35
0
64
0
0.94
68926988--68927204
46
4.6
46
80
11
183
28
18
29
23
1.98
68931324--68931367
17
2.5
17
82
10
54
59
0
9
31
1.29
68935097--68935139
19
2.3
19
83
0
50
53
20
6
18
1.67
68937731--68937773
11
3.8
11
77
17
52
51
2
0
46
1.13
68937742--68937792
22
2.3
23
82
3
59
54
3
1
39
1.30
68937797--68937831
9
3.8
9
88
7
52
65
2
0
31
1.07
68946263--68946352
46
2.0
46
88
0
135
34
10
13
42
1.77
68953950--68953999
26
2.0
24
88
7
73
64
6
0
30
1.18
68953970--68954028
21
2.8
21
78
12
59
69
8
0
22
1.15
68960433--68960468
13
2.8
14
84
16
51
27
25
0
47
1.52
68960420--68960460
18
2.2
19
87
12
59
29
24
0
46
1.53
68960583--68960717
39
3.4
38
73
8
101
28
28
20
23
1.99
68960957--68960995
18
2.1
19
90
4
62
48
10
0
41
1.37
68962298--68962329
5
6.4
5
100
0
64
59
0
0
40
0.97
68965863--68965898
13
2.8
14
84
16
51
27
25
0
47
1.52
68965850--68965890
18
2.2
19
87
12
59
29
24
0
46
1.53
68966013--68966045
17
1.9
17
93
0
57
21
45
12
21
1.84
68966365--68966403
18
2.1
19
90
4
62
48
10
0
41
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68967700--68967731
5
6.4
5
100
0
64
59
0
0
40
0.97
68979929--68980038
26
4.2
26
92
0
175
33
5
23
37
1.78
68981820--68982104
136
2.1
136
95
0
507
24
16
25
33
1.96
68982898--68982928
12
2.6
12
94
0
53
74
0
0
25
0.82
68983661--68983896
6
39.3
6
98
0
454
50
15
0
33
1.44
68991448--68991476
4
7.2
4
100
0
58
48
0
0
51
1.00
68991487--68991551
6
10.2
6
78
18
69
18
1
1
78
0.91
68991505--68991553
20
2.5
20
79
0
71
14
2
2
81
0.87
68991487--68991565
26
3.0
25
78
7
86
16
2
2
78
0.97
69002123--69002292
92
1.8
92
96
0
313
28
28
21
21
1.99
69002118--69002289
46
3.7
46
80
11
217
29
27
21
21
1.99
69002120--69002308
46
4.1
46
73
17
151
28
28
21
21
1.99
69002711--69002770
30
2.0
30
90
0
93
30
25
8
36
1.85
69009673--69009841
91
1.8
92
94
1
304
28
28
21
21
1.98
69009668--69009838
46
3.7
46
79
13
208
29
28
21
21
1.98
69009670--69009857
46
4.1
46
72
19
142
28
28
20
21
1.98
69010261--69010320
30
2.0
30
90
0
93
30
25
8
36
1.85
69014819--69014889
34
2.1
34
100
0
142
19
26
7
46
1.75
69017116--69017162
25
2.0
25
83
8
62
27
14
4
53
1.60
69017422--69017543
46
2.7
46
89
2
183
18
23
15
42
1.88
69017524--69017555
14
2.3
14
94
0
55
21
28
12
37
1.90
69017478--69017604
60
2.1
60
89
0
191
21
25
14
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69017538--69017739
38
4.7
45
77
18
243
24
24
14
35
1.94
69017538--69017739
84
2.4
84
95
0
359
24
24
14
35
1.94
69020964--69020995
5
6.6
5
92
7
57
81
0
0
18
0.70
69020965--69020995
9
3.3
9
95
4
53
80
0
0
19
0.71
69028452--69028503
18
2.9
18
85
0
68
36
11
9
42
1.74
69028928--69029239
72
4.3
72
83
3
362
24
5
15
54
1.63
69030933--69031001
31
2.2
31
82
5
77
49
8
5
36
1.58
69034599--69034634
18
2.1
17
89
5
54
52
0
5
41
1.24
69042422--69042509
43
2.0
43
100
0
176
25
9
30
35
1.87
69045687--69045778
45
2.0
46
93
2
159
32
14
13
40
1.84
69054240--69054491
126
2.0
126
100
0
504
24
32
16
26
1.96
69057706--69057739
15
2.3
15
100
0
68
38
5
23
32
1.79
69061282--69061414
45
3.0
44
81
7
112
22
15
26
36
1.93
69062849--69062885
2
18.5
2
100
0
74
48
0
0
51
1.00
69062948--69062978
13
2.3
14
94
5
55
32
6
12
48
1.67
69069457--69069500
15
2.9
15
86
0
61
59
13
11
15
1.62
69072885--69072959
39
1.9
39
97
0
141
24
26
24
25
2.00
69076537--69076710
43
4.1
43
87
1
233
31
29
15
23
1.95
69076535--69076721
85
2.2
86
88
0
268
31
29
16
22
1.96
69078191--69078324
32
4.1
32
79
12
155
53
9
5
31
1.56
69078194--69078287
30
3.1
30
89
3
143
53
10
4
31
1.55
69081935--69081996
8
8.3
7
83
5
61
27
1
3
67
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69081935--69082008
16
4.7
16
75
13
64
28
1
5
64
1.23
69082710--69082741
15
2.1
15
94
0
55
28
6
3
62
1.34
69083277--69083421
40
3.6
39
79
5
157
26
25
17
31
1.97
69083262--69083420
80
2.0
80
84
7
207
23
25
18
32
1.97
69083928--69083982
27
2.0
27
89
0
83
60
1
0
38
1.08
69087404--69087479
34
2.3
33
81
6
82
46
0
0
53
1.00
69088908--69089017
58
1.9
58
84
0
148
27
12
22
37
1.91
69089136--69089254
48
2.5
48
84
5
152
21
24
15
38
1.92
69089136--69089551
49
8.5
48
73
11
224
21
24
16
37
1.94
69089140--69089536
147
2.7
146
76
9
371
22
23
16
37
1.94
69089609--69089650
19
2.2
19
95
0
75
47
19
9
23
1.78
69091202--69091262
3
20.3
3
100
0
122
34
0
0
65
0.93
69094949--69094989
17
2.6
16
75
24
50
63
0
2
34
1.08
69095473--69095598
17
6.9
18
86
5
166
36
15
10
38
1.81
69095473--69095590
35
3.3
35
93
3
191
36
14
11
38
1.81
69096213--69096726
119
4.3
119
93
2
823
31
19
16
32
1.94
69096213--69096726
240
2.1
241
91
3
838
31
19
16
32
1.94
69097743--69097799
8
7.6
8
77
15
59
3
10
0
85
0.70
69097743--69097802
14
4.3
13
80
17
59
3
10
0
86
0.67
69097742--69097802
21
2.9
21
85
11
81
4
9
0
85
0.74
69099168--69099193
11
2.4
11
100
0
52
0
7
0
92
0.39
69101617--69101730
17
6.3
18
87
5
160
35
15
10
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69101617--69101722
35
3.0
35
95
1
185
35
15
11
37
1.83
69106753--69106855
20
5.2
21
73
17
76
14
22
22
40
1.90
69106757--69106872
39
3.0
39
87
0
151
14
23
23
38
1.92
69115200--69115332
45
3.0
44
80
7
146
23
15
27
33
1.95
69115210--69115369
84
1.9
85
84
7
218
24
16
28
30
1.97
69116497--69116534
2
19.0
2
100
0
76
50
50
0
0
1.00
69116534--69116561
2
14.0
2
100
0
56
50
0
0
50
1.00
69119161--69119210
15
3.4
15
86
2
66
10
16
12
62
1.55
69121593--69121768
46
3.8
46
78
10
196
21
21
28
28
1.98
69121590--69121761
93
1.8
93
92
0
290
21
21
29
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292