genome.fa.s9.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  119  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35924494--35924588	24	4.0	24	98	0	181	27	13	33	25	1.93
35924566--35924814	43	5.9	41	77	4	219	24	16	25	33	1.96
35924566--35924789	43	5.3	43	76	4	231	25	16	26	32	1.96
35924566--35924814	84	3.0	83	89	2	381	24	16	25	33	1.96
35928542--35928815	46	5.8	47	76	10	249	22	29	20	27	1.98
35928544--35928860	94	3.4	96	78	11	309	23	28	19	28	1.99
35943324--35943356	12	2.7	12	95	4	57	72	9	6	12	1.26
35943323--35943357	13	2.6	14	86	13	56	74	8	5	11	1.22
35945462--35945547	15	5.3	15	70	23	50	74	4	16	4	1.16
35951145--35951187	21	2.0	22	86	4	61	34	27	6	30	1.83
35953644--35953707	21	3.1	21	68	8	69	25	23	31	20	1.98
35953628--35953707	40	2.0	39	97	2	151	23	25	32	18	1.97
35953643--35953704	19	3.2	19	68	8	61	24	24	33	17	1.96
35953635--35953724	40	2.3	40	90	1	137	30	25	27	16	1.97
35958866--35958896	10	3.1	10	100	0	62	48	9	9	32	1.69
35959328--35959387	22	2.6	22	92	5	93	50	5	28	16	1.66
35960882--35961155	95	2.9	95	81	5	311	22	30	18	27	1.98
35960882--35961162	48	5.9	48	78	2	260	23	30	18	27	1.98
35963210--35963252	21	2.1	21	91	4	70	20	25	20	32	1.97
35963313--35963346	16	2.1	16	89	10	52	29	14	20	35	1.93
35963772--35963869	30	3.3	30	72	4	90	27	26	16	29	1.97
35965861--35965915	27	2.1	26	90	10	85	29	9	16	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35970506--35970579	24	2.9	26	76	17	66	5	22	1	70	1.16
35970522--35970582	19	2.9	20	73	22	54	3	21	1	73	1.06
35978888--35978984	30	3.2	30	77	8	108	29	15	26	27	1.96
35987551--35987592	17	2.5	17	84	7	50	26	16	35	21	1.94
35988478--35988522	14	3.3	14	84	6	56	28	33	2	35	1.70
35988487--35988527	14	3.0	14	89	3	57	21	31	4	41	1.74
35996538--35996780	40	6.1	40	90	2	357	24	29	24	21	1.99
36004646--36004902	40	6.5	40	89	2	360	24	28	24	22	1.99
36008337--36008433	30	3.2	30	71	8	90	27	15	28	27	1.96
36010535--36010617	30	2.7	30	81	9	89	13	21	1	63	1.35
36010568--36010623	18	3.1	18	76	5	51	7	19	3	69	1.27
36010593--36010617	12	2.1	12	100	0	50	8	16	0	76	1.02
36010620--36010650	12	2.6	12	100	0	62	25	16	12	45	1.83
36010698--36010754	5	11.0	5	75	20	55	3	17	1	77	1.00
36010698--36010754	16	3.7	14	82	15	60	3	17	1	77	1.00
36010696--36010765	20	3.3	20	73	18	63	4	18	1	75	1.04
36011668--36011721	11	4.9	10	82	14	63	18	3	3	74	1.12
36013431--36013527	30	3.2	30	71	8	90	27	15	28	27	1.96
36013979--36014044	10	6.6	10	76	10	64	36	10	21	31	1.87
36013979--36014044	20	3.3	20	83	8	73	36	10	21	31	1.87
36014092--36014162	25	2.9	25	89	2	108	29	23	22	23	1.99
36014093--36014174	24	3.4	25	82	12	84	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36016912--36016959	14	3.4	14	85	8	62	45	6	29	18	1.74
36023374--36023566	39	4.9	39	93	0	296	22	20	32	24	1.98
36034039--36034263	46	4.8	48	79	8	162	22	29	18	29	1.97
36034038--36034298	47	5.6	47	76	8	198	22	28	19	29	1.98
36035972--36035998	13	2.1	13	100	0	54	37	29	25	7	1.83
36042111--36042195	27	3.2	25	80	11	98	18	22	21	37	1.94
36050230--36050316	27	3.3	26	85	7	113	18	22	22	35	1.95
36055130--36055200	37	1.9	37	100	0	142	22	33	22	21	1.97
36055128--36055214	37	2.3	36	90	5	138	25	33	20	20	1.97
36055283--36055594	49	6.4	49	96	1	574	30	27	8	33	1.86
36055283--36055594	146	2.1	147	95	2	574	30	27	8	33	1.86
36067473--36067516	23	1.9	23	86	9	63	34	6	13	45	1.70
36069485--36069554	27	2.5	28	86	2	97	25	12	30	31	1.93
36076487--36076512	10	2.6	10	100	0	52	65	0	0	34	0.93
36076463--36076555	45	2.0	49	83	12	124	59	4	4	32	1.37
36077379--36077431	22	2.3	23	87	9	74	37	22	7	32	1.82
36079256--36079316	26	2.4	26	83	8	81	50	3	8	37	1.48
36079267--36079324	16	3.4	17	78	9	64	46	3	6	43	1.47
36079442--36079476	7	4.9	7	93	6	61	31	54	0	14	1.40
36079972--36080077	7	15.1	7	69	11	65	38	42	2	16	1.62
36080054--36080082	14	2.0	15	93	6	51	41	37	0	20	1.53
36080122--36080166	14	3.2	14	77	0	54	48	26	0	24	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36080309--36080407	14	7.0	14	77	5	101	41	34	0	24	1.55
36080309--36080441	7	18.7	7	71	6	70	41	33	1	24	1.64
36080962--36081055	40	2.4	40	83	7	129	24	18	23	34	1.96
36085601--36085635	16	2.2	16	89	0	52	54	0	0	45	0.99
36086662--36086727	34	1.9	34	96	0	123	39	6	6	48	1.53
36088464--36088522	29	2.0	29	100	0	118	27	6	20	45	1.76
36090622--36090659	14	2.7	14	91	0	58	50	2	7	39	1.46
36093704--36093871	40	4.2	41	78	5	175	26	26	21	25	1.99
36093695--36093868	80	2.2	79	80	4	197	26	26	20	26	1.99
36098083--36098134	15	3.2	15	78	19	59	55	1	1	40	1.22
36102383--36102434	20	2.6	20	81	0	68	25	26	30	17	1.97
36111296--36111375	29	2.8	29	96	0	142	37	16	22	23	1.93
36113693--36113739	24	1.9	25	86	4	69	31	25	17	25	1.97
36113778--36113834	9	5.9	9	76	15	60	35	7	21	36	1.80
36113776--36113846	20	3.5	20	90	0	115	35	9	21	33	1.86
36113787--36113829	15	2.8	16	83	16	56	34	9	20	34	1.85
36113893--36114059	23	7.1	23	90	4	262	28	20	20	29	1.98
36113892--36114081	24	8.0	23	87	5	256	28	21	21	28	1.98
36113891--36114059	47	3.6	47	95	0	302	28	21	20	28	1.98
36117605--36117721	49	2.4	49	92	0	189	30	22	19	27	1.98
36118307--36118383	27	2.9	27	84	0	100	20	23	22	33	1.97
36118441--36118533	27	3.4	28	78	10	93	32	7	18	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36118495--36118589	27	3.5	26	78	7	84	25	9	20	45	1.81
36118553--36118730	27	6.6	26	77	8	126	28	9	23	39	1.86
36118495--36118730	54	4.4	51	69	14	127	28	9	21	41	1.84
36118525--36118730	81	2.5	80	75	3	207	28	9	22	40	1.84
36118713--36118819	27	4.0	27	86	0	142	28	16	17	36	1.92
36125759--36125840	29	2.8	29	98	0	155	36	15	24	23	1.94
36129808--36129848	18	2.3	18	100	0	82	29	9	19	41	1.83
36130877--36130926	22	2.3	22	78	0	55	34	20	24	22	1.97
36132180--36132287	6	17.7	6	74	14	96	49	13	18	18	1.80
36132189--36132316	37	3.5	37	75	14	129	50	12	17	18	1.77
36132189--36132287	43	2.3	43	91	0	144	49	13	19	18	1.79
36132206--36132316	31	3.6	31	77	9	95	49	13	18	18	1.79
36132819--36133201	27	14.2	27	86	0	496	40	7	22	29	1.81
36132819--36133201	81	4.7	81	89	0	568	40	7	22	29	1.81
36133163--36133347	27	6.9	27	83	3	176	31	8	22	37	1.84
36133329--36133411	27	3.1	27	89	0	112	30	19	16	33	1.94
36133250--36133374	54	2.3	53	79	6	135	31	9	18	40	1.83
36135282--36135387	43	2.5	43	81	6	142	47	12	21	18	1.81
36135273--36135353	6	13.3	6	72	12	67	48	13	20	17	1.81
36135337--36135397	31	2.0	31	83	0	77	47	9	19	22	1.79
36135281--36135409	37	3.5	37	71	12	111	48	10	20	20	1.79
36135528--36135579	27	1.9	27	84	0	68	32	21	25	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36135932--36136291	27	13.3	27	86	1	443	40	7	21	30	1.80
36135913--36136291	81	4.7	81	85	1	490	40	7	21	30	1.80
36136284--36136441	27	5.9	27	82	5	149	31	10	22	36	1.87
36136423--36136505	27	3.1	27	82	6	105	28	19	18	33	1.95
36144657--36144727	34	2.1	34	81	5	81	28	23	21	26	1.99
36145016--36145069	27	2.0	27	88	0	81	35	18	16	29	1.93
36145186--36145219	17	2.0	17	88	11	52	17	35	29	17	1.93
36150748--36150901	29	5.5	27	81	4	155	31	25	15	27	1.96
36150748--36150878	27	4.7	29	76	11	121	33	24	15	26	1.95
36150748--36150851	55	1.9	55	97	0	199	35	24	14	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292