genome.fa.s9.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  167  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49583727--49583832	40	2.7	40	80	0	113	36	24	16	21	1.94
49585794--49586098	103	3.0	103	81	4	332	32	20	18	28	1.96
49592931--49592982	25	2.1	25	92	0	86	48	5	5	40	1.51
49602283--49602324	2	21.0	2	100	0	84	50	0	0	50	1.00
49615957--49615987	14	2.3	13	94	5	53	54	0	3	41	1.16
49619583--49619607	12	2.1	12	100	0	50	40	8	0	52	1.31
49620853--49620892	2	19.5	2	94	5	71	47	2	0	50	1.14
49621742--49621779	17	2.2	19	86	13	55	42	10	0	47	1.38
49623555--49623690	26	5.2	26	96	0	245	32	5	25	36	1.78
49627184--49627224	3	13.7	3	100	0	82	65	0	0	34	0.93
49632255--49632295	17	2.4	17	84	8	57	58	0	12	29	1.34
49641454--49641686	49	4.7	50	83	4	283	24	18	27	29	1.98
49641510--49641593	26	3.3	26	63	15	66	27	17	25	29	1.98
49641462--49641686	101	2.3	98	85	2	288	25	18	26	29	1.98
49646651--49646883	49	4.7	51	82	5	271	24	18	26	30	1.98
49646654--49646883	101	2.3	98	86	3	309	24	18	26	30	1.98
49649199--49649419	47	4.8	46	82	10	188	23	20	27	29	1.99
49649246--49649368	47	2.6	47	97	0	237	23	19	27	29	1.98
49669581--49669704	45	2.8	45	92	2	205	27	29	23	20	1.99
49669697--49669829	38	3.5	38	90	0	203	32	27	20	20	1.97
49675978--49676051	10	7.4	10	73	10	53	33	17	27	21	1.96
49675978--49676039	20	3.1	20	79	6	72	35	19	27	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49678055--49678095	19	2.1	20	90	4	66	2	21	4	70	1.18
49678142--49678177	17	2.1	17	89	0	54	5	25	2	66	1.27
49678145--49678199	22	2.5	21	76	5	56	3	21	5	69	1.25
49680112--49680153	10	4.1	10	81	6	57	38	11	26	23	1.90
49680114--49680180	20	3.3	21	81	6	75	29	16	26	26	1.97
49680115--49680170	21	2.7	21	86	2	60	32	17	28	21	1.96
49681877--49681928	3	17.3	3	89	0	50	71	0	21	7	1.11
49681898--49681928	15	2.1	15	100	0	62	74	0	25	0	0.82
49685537--49685663	23	5.7	23	71	14	104	51	2	1	44	1.24
49685566--49685607	20	2.3	18	80	15	50	52	0	0	47	1.00
49685501--49685665	88	1.9	88	97	0	312	49	3	3	44	1.33
49685571--49685608	20	1.9	20	94	0	67	50	0	0	50	1.00
49688115--49688167	25	2.1	25	100	0	106	26	11	20	41	1.86
49704631--49704781	42	3.6	42	82	1	185	29	23	15	30	1.96
49710711--49710872	40	4.1	40	86	3	218	27	27	22	23	1.99
49711414--49711447	2	17.0	2	100	0	68	50	0	0	50	1.00
49713032--49713145	57	2.0	55	83	11	142	29	21	15	32	1.95
49719325--49719359	18	2.0	18	94	5	63	17	28	40	14	1.88
49721942--49722044	53	1.9	53	96	0	188	23	34	28	13	1.93
49731279--49731306	13	2.2	13	100	0	56	75	0	0	25	0.81
49734353--49734456	34	3.1	34	83	5	129	24	20	12	43	1.86
49734435--49734614	35	5.2	35	74	7	134	35	21	12	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49734357--49734552	34	5.7	34	71	9	121	29	20	11	38	1.87
49734403--49734601	104	1.9	104	82	2	247	32	21	11	34	1.89
49734429--49734644	104	2.1	104	81	0	243	34	19	12	33	1.90
49734453--49734683	104	2.2	104	79	0	228	34	19	12	33	1.89
49735684--49735730	25	2.0	25	83	8	62	27	14	4	53	1.60
49735991--49736210	46	5.0	46	84	9	269	21	24	15	39	1.92
49736124--49736199	38	2.0	38	100	0	152	23	26	18	31	1.97
49741331--49741496	40	4.2	39	77	8	140	25	22	27	24	2.00
49742900--49743076	69	2.6	69	81	3	203	27	23	13	35	1.93
49742930--49743045	35	3.3	35	75	7	119	27	23	16	32	1.96
49749912--49750109	46	4.3	46	79	8	222	22	19	28	29	1.98
49753042--49753110	15	4.6	15	83	0	84	11	17	13	57	1.64
49753033--49753120	30	3.0	30	81	8	99	10	17	15	56	1.66
49755497--49755672	46	3.8	45	81	10	212	21	21	29	28	1.98
49755493--49755664	93	1.8	93	94	0	308	20	21	30	27	1.98
49757851--49757907	27	2.1	27	100	0	114	63	7	7	22	1.44
49758934--49758970	8	4.6	8	93	0	65	0	24	18	56	1.41
49763008--49763137	40	3.2	40	80	4	156	23	24	27	24	2.00
49765488--49765542	20	2.8	19	72	5	56	40	20	5	34	1.75
49765488--49765551	19	3.3	19	73	4	74	40	18	6	34	1.76
49765719--49765777	23	2.5	23	81	8	66	35	16	23	23	1.95
49771985--49772133	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49772026--49772133	40	2.7	38	85	8	128	21	29	25	23	1.99
49780104--49780252	80	1.9	80	81	2	183	22	30	24	22	1.99
49780145--49780252	40	2.7	38	85	8	128	21	29	25	23	1.99
49788775--49788978	40	5.1	40	87	1	275	23	21	28	26	1.99
49788771--49788982	80	2.7	80	89	2	320	24	21	27	26	1.99
49791457--49791583	30	4.2	30	77	5	121	25	24	11	38	1.89
49812254--49812283	15	2.0	15	100	0	60	46	20	20	13	1.83
49812873--49813317	41	10.9	41	94	1	709	30	22	25	21	1.99
49813357--49813426	36	1.9	36	88	0	104	48	30	1	20	1.58
49813865--49813933	15	4.7	15	72	13	54	18	0	43	37	1.51
49814044--49814087	16	2.6	17	82	7	54	52	2	2	43	1.26
49814056--49814105	26	1.9	26	87	0	73	50	4	4	42	1.40
49819317--49819545	43	5.4	42	83	3	271	24	19	25	31	1.98
49822048--49822140	34	2.7	34	89	0	141	23	25	22	27	2.00
49822144--49822211	18	3.8	18	71	7	66	39	16	19	25	1.91
49822470--49822519	23	2.2	23	82	13	59	40	20	16	24	1.91
49822554--49822676	27	4.7	27	75	11	103	22	21	17	38	1.93
49825337--49825410	25	2.9	25	81	2	76	36	16	5	41	1.71
49831802--49831856	29	1.9	28	88	3	83	21	16	25	36	1.94
49846808--49846917	31	3.5	31	96	0	202	26	25	18	30	1.98
49846941--49847032	42	2.2	42	90	0	139	34	20	14	30	1.92
49847178--49847274	26	3.8	26	91	1	153	26	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49847165--49847274	51	2.2	49	90	8	168	26	23	21	28	1.99
49847165--49847274	26	4.4	25	87	4	134	26	23	21	28	1.99
49847324--49847410	20	4.3	20	89	2	131	32	18	9	40	1.82
49847339--49847411	11	7.2	11	67	16	50	34	17	8	39	1.80
49848117--49848193	27	2.9	27	77	11	77	23	20	19	36	1.95
49848219--49848543	27	12.0	27	78	6	228	30	8	20	40	1.82
49848214--49848529	81	3.9	82	78	6	279	29	8	19	41	1.81
49848219--49848543	54	6.0	54	77	8	259	30	8	20	40	1.82
49848521--49848624	27	3.9	27	89	0	136	40	8	23	27	1.84
49848495--49848651	54	2.9	54	78	0	161	36	8	22	31	1.85
49853966--49854148	79	2.3	81	84	7	232	24	22	27	25	2.00
49853967--49854150	40	4.6	40	83	9	216	23	22	28	25	2.00
49854019--49854183	79	2.1	79	84	6	210	25	21	27	25	1.99
49862752--49862860	39	2.7	39	84	2	128	21	23	25	29	1.99
49862729--49862913	79	2.3	81	80	10	195	23	25	24	25	2.00
49862737--49862913	40	4.4	40	74	8	146	22	25	25	25	2.00
49865293--49865484	40	4.8	40	81	7	196	25	22	27	25	2.00
49865293--49865475	79	2.3	81	83	7	223	24	22	27	25	2.00
49865346--49865500	79	2.0	79	83	7	199	25	21	27	25	1.99
49868097--49868389	146	2.0	146	98	0	568	40	8	17	33	1.80
49875673--49875758	46	1.9	45	85	4	120	31	29	18	20	1.97
49877508--49877588	20	4.1	20	76	10	67	41	18	25	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49882293--49882341	24	2.0	24	100	0	98	46	0	16	36	1.47
49882940--49882997	27	2.2	26	84	9	73	20	29	15	34	1.94
49883086--49883184	24	4.1	23	68	12	65	21	25	19	34	1.96
49887878--49887909	16	1.9	16	93	6	55	75	3	0	21	0.95
49893351--49893522	48	3.6	48	78	6	186	29	20	27	23	1.99
49893346--49893522	96	1.8	96	90	0	282	28	20	27	23	1.99
49893858--49893918	16	3.2	21	61	29	55	27	16	8	47	1.75
49893862--49893920	19	3.3	19	64	22	54	27	18	10	44	1.82
49893851--49893922	35	2.0	36	97	2	137	25	16	8	50	1.73
49894581--49894620	19	2.1	19	90	0	62	22	27	40	10	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292