genome.fa.s9.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  152  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45029339--45029381	21	2.0	21	100	0	86	32	9	13	44	1.76
45029384--45029424	16	2.6	16	84	0	55	39	12	2	46	1.54
45045122--45045185	32	2.0	32	100	0	128	21	18	12	46	1.82
45050223--45050267	18	2.5	18	100	0	90	46	4	24	24	1.71
45051413--45051530	41	3.1	41	60	28	98	32	17	28	21	1.96
45051381--45051544	71	2.3	71	100	0	328	35	17	28	18	1.94
45058737--45058931	51	3.8	51	85	2	259	28	23	20	28	1.98
45059181--45059235	27	2.0	27	85	0	74	38	16	7	38	1.76
45081226--45081400	47	3.7	46	79	9	172	25	29	17	28	1.97
45081270--45081401	50	2.7	50	77	12	148	25	28	17	28	1.97
45081226--45081535	46	6.6	47	75	9	185	25	28	17	28	1.97
45088356--45088394	18	2.2	18	90	0	60	41	20	5	33	1.74
45088940--45089115	47	3.7	47	76	14	130	26	27	16	28	1.97
45088940--45089115	97	1.8	97	86	3	255	26	27	16	28	1.97
45089119--45089301	46	3.9	46	78	7	181	24	29	16	28	1.97
45102163--45102238	38	2.0	38	97	0	143	53	5	11	28	1.59
45108800--45108848	24	2.0	24	100	0	98	26	24	8	40	1.83
45114133--45114268	67	2.0	67	94	5	240	47	9	8	34	1.66
45114293--45114326	4	8.2	4	87	6	50	70	0	5	23	1.09
45115390--45115434	17	2.6	17	89	3	63	26	0	2	71	0.98
45115406--45115484	11	8.3	10	72	17	53	26	5	2	65	1.26
45115479--45115536	24	2.3	25	85	5	73	25	3	1	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45115504--45115540	20	1.9	20	94	5	67	32	0	0	67	0.91
45115406--45115537	9	14.9	8	69	23	54	27	4	2	65	1.23
45115464--45115536	26	2.9	24	81	8	83	26	4	2	67	1.22
45115585--45115615	11	2.8	11	95	0	53	58	0	0	41	0.98
45115602--45115639	19	2.0	20	89	5	60	44	0	0	55	0.99
45121419--45121548	40	3.2	40	83	4	165	23	29	25	22	1.99
45123982--45124100	46	2.6	44	86	7	150	27	19	29	23	1.98
45123982--45124290	49	6.6	48	73	9	208	27	19	27	24	1.99
45127444--45127569	40	3.2	39	80	6	139	21	25	24	28	1.99
45127383--45127569	80	2.3	80	78	12	204	22	27	24	25	2.00
45135446--45135618	40	4.3	40	77	5	129	23	27	22	26	2.00
45137074--45137199	40	3.2	39	80	6	139	21	25	24	28	1.99
45137013--45137199	80	2.3	80	78	12	204	22	27	24	25	2.00
45145143--45145268	40	3.2	39	80	6	139	21	25	24	28	1.99
45145082--45145268	80	2.3	80	78	12	204	22	27	24	25	2.00
45147217--45147256	21	1.9	21	89	0	62	7	37	32	22	1.82
45148405--45148436	14	2.4	14	94	5	57	18	9	0	71	1.12
45153456--45153497	3	14.0	3	100	0	84	33	0	0	66	0.92
45156553--45156604	19	2.7	19	91	5	79	21	30	36	11	1.89
45165013--45165054	3	14.0	3	94	0	75	35	0	0	64	0.94
45171650--45171725	26	2.9	26	92	0	116	30	17	10	42	1.82
45178452--45178575	39	3.2	39	90	0	194	20	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45178452--45178593	39	3.6	39	88	1	187	21	22	29	26	1.99
45178452--45178609	78	2.0	78	80	4	176	22	21	29	27	1.99
45183547--45183585	19	2.1	19	95	0	69	28	23	7	41	1.82
45185340--45185463	39	3.2	39	90	0	194	21	20	29	27	1.98
45185340--45185501	39	4.2	39	85	2	184	21	22	29	26	1.99
45186606--45186676	24	2.9	23	83	8	70	22	18	21	38	1.94
45190497--45190529	13	2.5	13	95	0	57	18	48	27	6	1.71
45193188--45193230	15	2.9	15	82	0	59	20	25	11	41	1.86
45197814--45197880	31	2.1	32	94	2	118	44	13	17	23	1.85
45204033--45204073	15	2.7	15	92	0	73	26	26	4	41	1.76
45207372--45207429	25	2.3	25	87	0	80	29	18	22	29	1.98
45210686--45210729	19	2.4	19	85	7	56	50	0	9	40	1.34
45212522--45212590	28	2.5	28	95	2	122	43	27	10	18	1.82
45228338--45228545	40	5.2	40	79	5	224	26	25	22	25	2.00
45236424--45236624	39	5.2	40	80	11	242	26	25	23	24	2.00
45237856--45238021	40	4.2	40	77	8	171	26	24	22	26	2.00
45237872--45238021	81	1.9	77	83	8	194	26	24	23	26	2.00
45245882--45246089	40	5.2	40	80	3	231	25	26	22	25	2.00
45262584--45262816	70	3.3	70	77	5	238	32	20	23	23	1.98
45263413--45263446	17	2.0	17	94	0	59	8	14	0	76	1.01
45265187--45265282	22	4.4	22	79	0	120	32	28	27	12	1.93
45279054--45279155	43	2.4	43	83	6	118	25	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45284745--45284854	40	2.7	41	86	8	138	20	30	26	22	1.99
45288293--45288564	49	5.7	49	93	3	457	32	7	30	29	1.85
45288293--45288564	96	2.8	96	93	3	458	32	7	30	29	1.85
45288293--45288564	145	1.9	143	96	1	499	32	7	30	29	1.85
45289219--45289250	2	16.0	2	100	0	64	50	0	0	50	1.00
45298803--45298894	15	6.0	15	77	6	87	31	26	2	40	1.68
45298804--45298894	30	3.0	30	77	9	103	30	26	2	40	1.68
45300055--45300095	20	2.0	20	100	0	82	24	14	19	41	1.89
45301869--45301944	38	2.0	39	84	2	100	32	9	21	36	1.85
45313102--45313244	47	3.1	46	85	7	182	29	28	8	33	1.86
45314562--45314679	41	3.1	41	60	28	98	32	17	28	21	1.96
45314530--45314693	71	2.3	71	100	0	328	35	17	28	18	1.94
45322089--45322206	41	3.1	41	60	28	98	32	17	28	21	1.96
45322057--45322220	71	2.3	71	100	0	328	35	17	28	18	1.94
45327077--45327243	91	1.8	91	82	11	216	26	18	29	25	1.98
45340486--45340667	79	2.3	81	83	7	221	25	28	22	24	2.00
45340464--45340667	40	5.1	40	80	8	220	25	27	22	24	2.00
45348530--45348708	40	4.6	40	79	12	192	25	27	22	24	2.00
45348533--45348705	77	2.2	78	80	11	185	24	27	22	24	2.00
45348530--45348709	39	4.6	40	80	12	203	25	27	22	24	2.00
45352010--45352300	95	3.1	95	84	1	386	31	15	13	38	1.87
45352322--45352613	95	3.1	95	81	3	282	34	16	9	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45352505--45352823	132	2.4	132	82	0	377	34	16	11	36	1.85
45355219--45355251	6	5.5	6	92	0	57	15	27	0	57	1.38
45364334--45364413	21	3.7	21	75	9	70	31	13	18	36	1.90
45365706--45365743	16	2.4	16	86	4	51	60	2	10	26	1.43
45371048--45371101	21	2.6	21	96	0	99	20	33	27	18	1.96
45373664--45373728	32	2.0	32	93	0	112	36	13	4	44	1.65
45374737--45374800	13	4.9	13	70	14	51	35	9	18	35	1.83
45375660--45375753	27	3.5	27	86	2	118	24	19	18	38	1.93
45381894--45381958	31	2.1	31	94	0	112	23	23	15	38	1.92
45382153--45382294	23	6.0	24	86	7	193	28	22	21	27	1.99
45382174--45382294	48	2.6	47	88	8	192	29	21	20	28	1.98
45382352--45382428	9	7.9	9	70	16	55	35	22	9	33	1.85
45382348--45382430	20	4.2	20	95	0	148	32	20	12	34	1.89
45382467--45382514	25	1.9	25	86	0	69	25	16	25	33	1.96
45385442--45385534	42	2.2	42	92	0	159	20	27	29	22	1.98
45392341--45392661	46	7.0	46	89	2	412	37	14	24	22	1.92
45395828--45395946	46	2.6	46	93	0	193	21	30	12	35	1.91
45395960--45396153	47	4.1	47	93	2	327	26	27	11	34	1.91
45396012--45396132	22	5.2	22	64	27	63	24	28	13	33	1.93
45395985--45396178	94	2.1	91	83	7	232	30	25	10	32	1.89
45399501--45399555	25	2.2	25	90	6	85	27	30	12	29	1.93
45399724--45399915	40	4.8	40	90	0	294	26	30	22	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45399724--45399917	80	2.4	80	96	0	352	26	29	22	21	1.99
45401399--45401581	46	4.0	46	91	0	285	23	32	9	34	1.88
45401555--45401788	47	5.0	47	92	1	362	25	28	11	34	1.91
45401645--45401767	22	5.3	22	64	27	67	24	28	13	33	1.94
45401620--45401813	94	2.1	91	84	7	250	29	25	10	33	1.90
45402393--45402473	40	2.0	40	100	0	162	39	12	14	33	1.84
45407480--45407746	46	5.8	46	88	1	347	38	14	24	22	1.92
45409590--45409623	16	2.2	15	89	5	50	44	0	0	55	0.99
45411870--45412041	93	1.8	93	96	0	317	27	29	21	20	1.98
45411863--45412038	46	3.8	46	79	12	216	28	29	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292