genome.fa.s9.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  200  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59721738--59721822	42	2.0	42	93	0	143	44	23	10	21	1.83
59722110--59722140	9	3.4	9	100	0	62	41	22	0	35	1.54
59725154--59725204	20	2.5	20	100	0	102	27	15	13	43	1.85
59725197--59725234	20	1.9	20	88	0	58	36	15	10	36	1.82
59731046--59731078	15	2.1	17	88	11	52	33	0	15	51	1.43
59742478--59742522	17	2.7	16	90	10	72	51	0	0	48	1.00
59742486--59742544	27	2.2	28	78	9	68	54	1	0	44	1.10
59749856--59749893	18	2.1	19	90	5	60	34	5	0	60	1.19
59749856--59749900	19	2.3	19	85	11	56	33	6	0	60	1.23
59752620--59752664	19	2.3	19	80	7	54	22	6	2	68	1.24
59758423--59758473	15	3.2	16	73	13	52	64	0	0	35	0.94
59758424--59758496	32	2.2	32	83	7	85	61	0	0	38	0.96
59761058--59761100	23	2.0	21	86	9	59	6	6	2	83	0.88
59761059--59761108	8	6.4	8	77	11	50	8	4	4	84	0.87
59761228--59761262	15	2.3	15	100	0	70	31	11	5	51	1.61
59763122--59763165	20	2.2	20	88	8	63	52	2	20	25	1.58
59768549--59768598	19	2.7	19	85	11	61	10	4	8	78	1.09
59772113--59772143	10	3.1	10	95	0	53	16	54	0	29	1.42
59772372--59772435	15	4.2	15	74	20	53	18	3	3	75	1.08
59773602--59773644	22	2.0	21	86	4	59	39	0	4	55	1.20
59786367--59786742	190	2.0	192	83	3	479	40	14	20	24	1.89
59787606--59787646	15	2.5	17	80	11	59	63	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59790960--59791003	19	2.3	19	88	7	63	38	2	0	59	1.10
59793561--59793605	23	2.0	23	95	0	81	11	24	26	37	1.89
59793595--59793733	72	1.9	76	82	7	178	22	19	17	41	1.91
59799098--59799146	14	3.9	12	89	7	55	38	0	0	61	0.96
59799113--59799151	2	20.0	2	92	5	62	46	0	0	53	1.00
59800371--59800426	21	2.7	21	78	15	62	35	0	16	48	1.46
59801217--59801548	45	7.4	45	89	0	475	19	18	20	40	1.91
59801528--59801558	6	5.2	6	100	0	62	16	16	16	51	1.77
59801593--59801629	6	6.2	6	96	0	65	16	18	16	48	1.81
59801734--59802016	18	15.3	18	73	11	187	35	12	15	36	1.85
59801734--59802016	36	7.6	36	71	12	214	35	12	15	36	1.85
59804189--59804364	46	3.8	46	79	12	216	20	21	29	28	1.98
59804186--59804357	93	1.8	93	96	0	317	20	21	29	27	1.98
59811762--59811937	46	3.8	46	79	12	216	20	21	29	28	1.98
59811759--59811930	93	1.8	93	96	0	317	20	21	29	27	1.98
59814952--59814997	23	2.0	23	100	0	92	47	4	13	34	1.62
59814952--59815006	23	2.4	23	90	0	74	47	7	12	32	1.69
59816069--59816751	317	2.1	320	83	4	862	27	16	25	30	1.97
59818893--59818921	14	2.0	15	93	6	51	44	0	6	48	1.29
59822483--59822536	28	1.9	28	88	7	83	35	11	3	50	1.56
59822614--59822680	30	2.2	30	84	5	91	49	0	1	49	1.10
59826825--59826859	13	2.7	13	87	12	54	22	0	2	74	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59828447--59828508	24	2.6	24	84	0	70	29	16	11	43	1.82
59828811--59828861	25	2.0	25	84	0	66	33	0	1	64	1.05
59830263--59830290	14	2.0	14	100	0	56	71	14	0	14	1.15
59830876--59830905	11	2.7	11	100	0	60	63	10	16	10	1.51
59832047--59832109	31	2.0	31	90	0	99	44	7	22	25	1.79
59836031--59836148	41	3.1	41	60	28	98	32	17	28	21	1.96
59835999--59836162	71	2.3	71	100	0	328	35	17	28	18	1.94
59845110--59845193	26	3.2	26	96	0	150	36	25	4	33	1.77
59849162--59849227	34	1.9	34	100	0	132	50	6	9	34	1.59
59852354--59852413	31	1.9	32	82	3	77	53	10	5	31	1.56
59857005--59857116	32	3.8	31	72	17	103	39	11	10	38	1.77
59860048--59860129	42	2.0	42	97	0	155	37	18	8	35	1.81
59861397--59861459	30	2.1	30	93	0	108	25	3	15	55	1.55
59861397--59861476	30	2.7	30	84	5	92	25	3	15	56	1.56
59861580--59861609	11	2.7	11	89	0	51	66	0	0	33	0.92
59862981--59863017	18	2.1	18	100	0	74	24	27	16	32	1.96
59864050--59864084	11	3.0	12	91	8	63	48	0	0	51	1.00
59874733--59874815	44	1.9	44	85	2	114	22	6	7	63	1.42
59883094--59883129	18	2.0	18	89	10	56	61	2	2	33	1.25
59886510--59886552	14	2.9	14	86	6	50	62	6	2	27	1.33
59886582--59886650	31	2.3	31	89	2	104	52	7	17	23	1.69
59888606--59888697	36	2.8	33	86	13	129	72	18	5	3	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59895203--59895412	40	5.2	40	88	2	305	21	28	24	25	1.99
59902420--59902629	40	5.2	40	88	2	305	21	28	24	25	1.99
59905683--59905748	18	3.7	18	95	0	114	39	13	13	33	1.84
59907962--59908034	29	2.5	29	88	0	83	26	28	16	28	1.97
59914657--59914682	13	2.0	13	100	0	52	15	0	0	84	0.62
59915736--59915783	20	2.4	20	82	0	60	41	0	0	58	0.98
59915899--59915951	28	2.1	27	83	16	69	64	5	3	26	1.33
59917665--59917706	21	2.0	21	85	0	57	42	2	0	54	1.13
59918349--59918390	21	2.1	21	86	8	61	45	0	0	54	0.99
59918349--59918439	20	4.2	21	70	18	62	38	0	5	56	1.23
59918771--59918797	6	4.5	6	100	0	54	85	0	14	0	0.61
59919213--59919267	27	2.0	27	96	0	101	32	25	14	27	1.95
59934113--59934137	12	2.1	12	100	0	50	60	0	8	32	1.26
59934178--59934253	11	6.5	11	73	19	64	64	0	2	32	1.07
59934120--59934242	14	9.2	13	66	25	53	62	4	3	30	1.29
59934173--59934257	25	3.4	25	80	6	93	63	1	2	32	1.15
59934284--59934348	26	2.5	25	80	7	67	46	3	4	46	1.39
59934360--59934393	18	1.9	17	88	5	50	73	0	2	23	0.97
59941856--59941890	14	2.5	14	100	0	70	28	22	11	37	1.89
59942970--59943037	23	2.9	22	77	14	57	50	2	2	44	1.32
59942971--59943014	18	2.4	19	88	3	63	50	4	0	45	1.22
59944607--59944637	16	1.9	16	93	0	53	48	6	12	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59948064--59948109	24	1.9	24	100	0	92	26	0	0	73	0.83
59948934--59948964	9	3.3	9	95	4	53	22	0	0	77	0.77
59949365--59949391	11	2.5	11	100	0	54	33	0	0	66	0.92
59950402--59950440	20	2.0	20	90	5	62	58	0	5	35	1.20
59953130--59953161	15	2.1	16	88	11	50	65	3	6	25	1.31
59963476--59963512	19	1.9	19	88	0	56	62	0	0	37	0.96
59963628--59963666	11	3.5	11	85	0	60	64	10	5	20	1.44
59963623--59963687	22	3.0	22	86	0	85	66	15	6	12	1.43
59969265--59969330	33	2.0	33	82	14	82	39	4	1	54	1.30
59970566--59970631	33	2.0	33	96	0	123	54	4	6	34	1.45
59970770--59970829	31	1.9	31	83	6	77	46	8	6	38	1.60
59974087--59974117	16	1.9	16	93	0	53	19	9	12	58	1.62
59978887--59978911	13	1.9	13	100	0	50	32	0	4	64	1.12
59979602--59979639	6	6.3	6	93	0	67	52	15	31	0	1.43
59992382--59992439	22	2.6	23	78	10	66	22	17	15	44	1.86
59996594--59996664	20	3.6	19	79	9	63	53	5	4	36	1.44
59996621--59996669	19	2.6	19	84	9	57	53	4	2	40	1.32
59996695--59996732	20	1.9	20	88	0	58	73	2	0	23	0.95
59996790--59996825	3	12.0	3	100	0	72	33	0	0	66	0.92
59998526--59998577	21	2.5	21	87	0	86	19	25	36	19	1.95
59999784--60000067	48	5.9	48	72	5	225	25	28	18	26	1.98
59999785--60000068	96	3.0	96	85	1	365	26	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60000625--60000681	30	1.9	30	96	0	105	42	15	3	38	1.65
60002326--60002404	41	2.0	40	82	7	97	22	12	27	36	1.91
60009521--60009598	41	1.9	41	91	0	129	17	11	33	37	1.86
60016467--60016502	19	2.0	19	89	10	58	66	11	2	19	1.35
60018547--60018750	100	2.0	100	99	0	401	26	16	22	33	1.95
60021265--60021321	23	2.5	23	85	5	80	63	3	0	33	1.12
60022217--60022255	6	6.5	6	90	0	51	20	23	12	43	1.86
60023818--60023886	33	2.1	33	83	5	86	40	13	24	21	1.89
60030591--60030618	13	2.2	13	100	0	56	17	25	35	21	1.95
60037628--60037670	4	10.8	4	100	0	86	51	23	0	25	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292