genome.fa.s9.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  53  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15419988--15420062	28	2.7	28	87	0	105	29	33	16	21	1.95
15421774--15421873	43	2.3	43	83	6	114	33	24	15	28	1.95
15440652--15440718	26	2.7	23	79	9	62	17	22	17	41	1.90
15442522--15442611	26	3.7	24	77	15	96	23	22	20	34	1.97
15442838--15442914	20	3.8	20	77	1	73	35	12	16	35	1.88
15444596--15444630	18	1.9	18	94	0	61	40	48	2	8	1.49
15444607--15444631	13	1.9	13	100	0	50	40	48	0	12	1.40
15444659--15444697	20	2.0	20	84	0	51	74	7	0	17	1.05
15444717--15444793	9	8.6	9	78	5	57	28	7	16	46	1.75
15444725--15444794	18	3.9	18	76	0	77	27	7	17	48	1.72
15444727--15444794	27	2.5	27	78	0	73	27	7	17	47	1.74
15444718--15444794	36	2.1	36	82	0	91	28	7	16	46	1.75
15444963--15445712	376	2.0	376	98	0	1464	27	18	20	33	1.96
15447736--15447836	28	3.5	28	86	6	114	29	13	26	29	1.94
15452231--15452401	46	3.7	45	75	15	170	22	19	28	29	1.98
15454786--15454827	18	2.2	20	83	8	52	52	11	0	35	1.38
15463752--15464075	130	2.5	129	78	4	312	36	18	18	26	1.94
15464018--15464348	130	2.6	130	82	4	400	34	18	18	28	1.95
15471214--15471375	46	3.5	45	78	6	166	23	29	19	28	1.98
15471492--15471523	17	2.0	17	88	11	50	46	18	3	31	1.65
15475966--15476072	44	2.5	43	80	6	119	22	20	26	30	1.98
15475966--15476127	43	3.8	43	75	12	129	24	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15476623--15476665	23	2.0	22	86	9	61	72	2	18	6	1.19
15477838--15477920	29	2.9	29	100	0	166	30	14	28	26	1.95
15477834--15477969	59	2.3	58	82	5	159	27	15	31	25	1.96
15484556--15484606	19	2.9	17	71	23	52	78	1	15	3	0.99
15485766--15485830	29	2.2	29	91	2	103	32	16	27	23	1.96
15489255--15489482	48	4.9	47	75	10	216	29	22	20	27	1.99
15490578--15490625	13	3.7	13	94	0	78	16	39	29	14	1.88
15491941--15491978	19	2.0	19	100	0	76	36	10	15	36	1.82
15492006--15492056	26	2.0	26	100	0	102	21	3	23	50	1.65
15496817--15496992	46	3.8	45	78	10	194	21	20	28	28	1.98
15496813--15496984	93	1.8	93	92	0	290	21	20	29	27	1.98
15504139--15504181	4	10.8	4	100	0	86	51	0	23	25	1.49
15509007--15509113	53	2.0	53	98	0	205	46	9	8	35	1.66
15513514--15513546	16	2.0	17	88	5	50	42	9	3	45	1.51
15513700--15513735	17	2.1	17	89	0	54	58	0	0	41	0.98
15516529--15516558	15	2.0	15	100	0	60	53	6	20	20	1.67
15526654--15526702	25	1.9	26	84	12	66	42	2	6	48	1.39
15526622--15526759	69	2.0	67	87	2	195	40	5	4	49	1.47
15531249--15531440	48	4.0	48	78	4	208	34	28	14	22	1.94
15547135--15547227	44	2.1	44	85	0	123	36	15	24	23	1.93
15554931--15554994	29	2.2	29	88	0	92	32	25	1	40	1.65
15574640--15574684	22	2.0	22	100	0	90	24	8	26	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15577754--15577783	12	2.5	12	88	0	51	50	30	0	20	1.49
15577901--15577953	24	2.1	26	86	6	74	52	11	22	13	1.71
15578233--15578690	3	152.0	3	67	19	131	27	7	3	62	1.39
15578350--15578403	28	2.0	27	81	3	63	24	9	0	66	1.20
15578509--15578565	23	2.5	23	81	13	57	22	8	1	66	1.29
15578496--15578604	54	2.0	54	98	0	209	22	9	0	66	1.25
15578933--15579194	125	2.1	127	83	5	325	33	14	16	35	1.89
15583963--15583988	2	13.0	2	100	0	52	50	0	0	50	1.00
15587304--15587417	60	1.9	60	96	0	210	39	14	22	23	1.91
15593480--15593651	93	1.8	93	94	0	308	28	29	21	20	1.98
15593473--15593648	46	3.8	47	79	12	211	29	28	21	20	1.98
15597135--15597168	2	17.0	2	93	0	59	50	0	2	47	1.16
15598891--15599058	40	4.2	40	83	4	187	25	27	21	25	1.99
15598877--15599058	80	2.3	80	82	2	215	25	26	21	26	1.99
15603476--15603562	39	2.2	39	95	0	156	27	27	22	21	1.99
15607060--15607228	43	4.0	41	75	10	144	31	26	15	25	1.96
15607855--15607897	20	2.0	20	82	8	50	53	13	0	32	1.41
15610671--15610942	39	7.0	39	95	0	490	21	25	29	23	1.99
15617521--15617567	21	2.2	21	96	0	85	53	12	12	21	1.72
15619106--15619135	6	5.0	6	100	0	60	0	66	0	33	0.92
15625640--15625699	26	2.3	26	85	2	77	40	26	18	15	1.90
15628776--15628818	17	2.6	16	85	14	52	69	6	2	20	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15629760--15629789	15	2.0	15	93	0	51	16	6	10	66	1.41
15630921--15630973	26	2.0	26	85	7	72	45	3	9	41	1.54
15639706--15639748	21	2.0	21	86	0	59	16	13	25	44	1.85
15643096--15643233	40	3.5	40	83	4	156	26	21	26	26	2.00
15643111--15643233	40	3.1	40	85	3	160	25	20	26	27	1.99
15645636--15645818	83	2.2	84	89	1	269	46	11	9	32	1.73
15649317--15649360	3	14.7	3	100	0	88	68	0	0	31	0.90
15649693--15649739	17	2.8	16	78	9	58	40	0	2	57	1.11
15650045--15650092	21	2.3	21	81	0	51	33	0	4	62	1.14
15665809--15665863	27	2.0	27	89	0	83	29	16	12	41	1.85
15671870--15671991	37	3.3	37	92	0	199	22	31	18	27	1.97
15672093--15672404	49	6.4	49	95	0	554	29	33	8	28	1.88
15676257--15676290	14	2.4	14	90	0	50	44	0	2	52	1.16
15679783--15679821	20	2.0	20	85	10	53	51	5	2	41	1.38
15689907--15690120	69	3.1	69	97	1	392	35	14	12	37	1.84
15691203--15691235	17	1.9	17	88	11	50	60	18	15	6	1.54
15694850--15694879	15	2.0	15	100	0	60	20	20	20	40	1.92
15706235--15706280	23	2.0	22	84	16	58	23	4	10	60	1.47
15712650--15712728	38	2.1	38	85	0	104	39	11	16	32	1.84
15712648--15712801	56	2.7	55	82	7	175	35	12	18	33	1.89
15712648--15712801	18	8.2	18	76	7	137	35	12	18	33	1.89
15712688--15712801	38	3.1	37	85	7	142	34	13	19	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15714117--15714217	39	2.6	39	90	0	157	11	22	24	40	1.88
15725366--15725460	46	2.0	47	84	6	122	30	27	15	26	1.96
15725418--15725552	53	2.6	51	82	12	150	29	26	16	27	1.97
15730909--15730959	23	2.2	23	82	6	68	31	5	5	56	1.47
15734863--15735087	111	2.0	113	90	2	355	42	12	10	34	1.77
15736363--15736419	27	2.1	27	96	0	105	33	7	19	40	1.78
15739959--15740136	96	1.9	96	89	2	277	35	18	12	33	1.89
15740734--15740786	20	2.9	17	77	22	54	5	9	3	81	0.98
15740744--15740786	18	2.2	20	80	12	54	4	11	4	79	1.04
15745335--15745376	20	2.1	20	86	0	57	54	2	0	42	1.13
15745629--15745659	16	1.9	16	93	0	53	51	0	0	48	1.00
15747162--15747208	21	2.4	20	83	13	62	42	0	2	55	1.12
15752735--15752763	3	9.7	3	100	0	58	34	0	34	31	1.58
15757705--15757803	28	3.5	28	81	4	101	29	15	25	30	1.95
15775283--15775449	86	1.9	86	98	0	325	37	11	23	26	1.90
15785107--15785179	31	2.3	31	83	6	85	21	4	0	73	0.99
15785137--15785198	31	2.0	32	87	3	90	27	3	0	69	1.04
15785202--15785232	12	2.5	13	94	5	55	29	0	3	67	1.06
15785266--15785290	10	2.5	10	100	0	50	64	0	8	28	1.22
15785619--15785643	12	2.1	12	100	0	50	60	0	0	40	0.97
15785937--15786011	37	2.0	37	97	0	141	25	24	34	16	1.95
15786173--15786238	12	5.7	11	90	1	51	63	0	36	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15786185--15786244	3	20.3	3	93	3	104	66	0	33	0	0.92
15786401--15786529	59	2.2	59	90	2	206	33	0	11	55	1.36
15786577--15786675	31	3.3	31	68	21	100	28	0	14	57	1.37
15786596--15786696	33	3.2	33	68	21	99	29	0	15	54	1.42
15786577--15786694	60	2.0	60	96	0	218	29	0	15	55	1.41
15788981--15789110	33	3.9	33	79	2	136	16	44	10	29	1.80
15788984--15789109	66	1.9	66	83	6	166	15	43	10	30	1.80
15789307--15789514	77	2.7	78	88	0	292	25	7	11	56	1.60
15796367--15796413	15	3.3	15	82	8	55	46	2	0	51	1.13
15801359--15801396	10	3.8	10	86	10	51	47	0	10	42	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292