genome.fa.s9.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  104  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31769726--31769783	20	2.9	21	80	12	68	58	5	0	36	1.20
31769732--31769783	19	2.7	19	85	14	63	59	5	0	34	1.21
31769763--31769814	26	2.0	27	84	3	70	50	1	0	48	1.12
31770016--31770073	24	2.4	24	85	0	71	51	3	0	44	1.18
31770038--31770079	20	2.2	20	91	4	68	61	2	0	35	1.09
31770048--31770090	20	2.2	20	87	4	61	65	2	0	32	1.06
31772703--31772729	3	9.0	3	100	0	54	66	0	0	33	0.92
31775265--31775444	56	3.3	54	81	10	199	25	27	1	46	1.60
31779050--31779181	35	3.6	35	75	9	138	23	25	24	27	2.00
31779086--31779223	40	3.6	39	73	9	131	24	24	22	28	2.00
31779045--31779229	75	2.5	75	89	0	280	24	25	23	26	2.00
31788487--31788514	13	2.2	13	100	0	56	14	10	32	42	1.80
31789489--31789641	39	3.9	39	92	0	252	23	20	32	23	1.98
31794384--31794536	39	3.9	39	92	0	252	23	20	32	23	1.98
31794387--31794565	78	2.3	78	88	2	243	24	21	31	22	1.98
31798282--31798309	13	2.2	13	100	0	56	14	10	32	42	1.80
31802901--31803053	39	3.9	39	92	0	252	23	20	32	23	1.98
31802902--31803083	39	4.6	39	89	0	247	23	21	31	23	1.98
31806805--31806832	13	2.2	13	100	0	56	14	10	32	42	1.80
31807808--31807960	39	3.9	39	92	0	252	23	20	32	23	1.98
31811712--31811739	13	2.2	13	100	0	56	14	10	32	42	1.80
31812715--31812867	39	3.9	39	92	0	252	23	20	32	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31812718--31812896	78	2.3	78	88	2	243	24	21	31	22	1.98
31823825--31823876	27	1.9	27	92	0	86	28	21	13	36	1.91
31826540--31826587	23	2.0	24	84	8	62	41	4	4	50	1.41
31826978--31827025	16	3.1	16	77	22	57	2	37	0	60	1.09
31829530--31829579	21	2.4	21	79	0	55	36	18	2	44	1.61
31846406--31846477	36	2.0	36	97	0	135	29	22	4	44	1.71
31848628--31848671	22	2.0	22	100	0	88	50	22	9	18	1.75
31849027--31849121	40	2.4	40	87	1	138	14	20	25	40	1.90
31852446--31852504	29	2.0	30	90	3	93	57	11	1	28	1.44
31852485--31852513	12	2.5	12	94	5	51	68	0	0	31	0.89
31854357--31854399	19	2.2	20	88	8	63	44	6	0	48	1.29
31854336--31854397	30	2.0	31	84	9	83	38	6	1	53	1.37
31854357--31854407	15	3.4	14	75	20	50	45	7	0	47	1.32
31860852--31860900	18	2.5	19	80	12	55	26	18	10	44	1.81
31878161--31878221	28	2.2	28	96	0	113	13	22	37	26	1.91
31881215--31881386	93	1.8	93	93	0	299	27	29	21	21	1.99
31881207--31881376	46	3.7	45	80	10	209	28	30	20	20	1.98
31881212--31881401	46	4.1	46	73	15	142	28	28	21	21	1.98
31891009--31891142	51	2.7	51	87	2	182	27	17	21	33	1.96
31895628--31895688	31	1.9	32	90	3	97	31	26	26	16	1.96
31895630--31895686	15	3.7	15	67	4	51	28	28	26	17	1.98
31897088--31897254	40	4.2	40	80	5	169	23	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31897633--31897745	56	2.1	54	81	9	131	27	16	17	38	1.92
31904295--31904461	40	4.2	40	80	5	169	23	27	22	25	2.00
31904839--31904951	56	2.1	54	80	9	122	27	15	17	38	1.91
31905378--31905448	18	3.9	18	75	0	52	30	15	25	28	1.96
31906051--31906124	37	2.0	37	100	0	148	45	8	18	27	1.77
31908642--31908682	21	2.0	21	85	9	57	60	2	0	36	1.10
31909378--31909451	3	24.3	3	97	2	139	66	0	1	32	1.00
31910253--31910313	2	30.5	2	85	6	79	49	3	1	45	1.28
31910241--31910300	18	3.3	18	88	6	77	46	5	3	45	1.41
31910247--31910317	16	4.3	17	87	7	85	49	5	1	43	1.35
31910326--31910375	22	2.3	22	96	3	93	48	0	8	44	1.32
31910783--31910817	18	2.0	18	94	5	63	65	0	0	34	0.93
31915092--31915136	21	2.1	21	100	0	90	26	17	35	20	1.95
31915123--31915186	29	2.2	29	83	2	85	31	18	28	21	1.97
31922958--31923029	29	2.5	29	95	2	128	27	15	30	26	1.96
31925671--31925762	28	3.2	29	92	4	152	29	16	28	26	1.97
31932358--31932420	30	2.1	30	85	8	85	74	1	17	6	1.10
31933590--31933683	29	3.2	29	96	0	170	30	15	27	25	1.96
31933586--31933720	58	2.3	58	83	3	166	27	15	31	25	1.96
31935488--31935568	27	3.0	27	78	8	85	18	20	20	39	1.93
31935685--31935840	6	25.3	6	71	17	106	20	19	13	46	1.84
31935688--31935819	25	5.6	25	81	12	161	20	21	13	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31935679--31935838	68	2.4	68	90	0	248	20	20	13	45	1.84
31948633--31948815	50	3.7	49	80	3	197	30	25	18	25	1.98
31955029--31955133	40	2.6	40	84	0	129	21	17	26	34	1.95
31955117--31955204	28	3.1	28	91	0	140	25	11	31	31	1.91
31964300--31964388	44	2.0	44	100	0	178	24	11	11	52	1.69
31972043--31972325	49	6.0	49	87	8	363	28	32	8	30	1.87
31972029--31972325	90	3.2	91	86	7	366	28	31	8	31	1.87
31972153--31972222	22	3.3	22	63	25	60	27	32	11	28	1.91
31972043--31972319	139	2.0	137	91	1	446	28	32	9	29	1.88
31975200--31975245	23	2.0	23	95	0	83	45	15	4	34	1.66
31978320--31978430	45	2.5	45	76	5	118	20	20	12	45	1.83
31978269--31978415	45	3.3	45	75	3	118	25	21	11	41	1.87
31979700--31979752	25	2.2	24	82	3	61	24	28	13	33	1.93
31984841--31984883	22	2.0	22	86	9	61	11	9	0	79	0.95
31986351--31986396	17	2.5	19	75	13	60	6	13	0	80	0.89
31993078--31993117	2	20.5	2	94	5	73	50	0	0	50	1.00
31995618--31995821	39	5.1	41	79	10	192	25	27	22	24	1.99
31997837--31997890	23	2.3	22	78	12	54	18	38	1	40	1.61
32008549--32008595	3	15.7	3	100	0	94	65	0	0	34	0.93
32009028--32009165	48	2.9	48	87	1	195	27	17	30	24	1.97
32009028--32009195	48	3.5	48	82	5	171	27	16	29	26	1.97
32014028--32014718	235	2.9	235	93	1	1154	28	16	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32015005--32015403	201	2.0	201	91	2	640	25	17	17	39	1.91
32017438--32017600	40	4.1	40	78	7	170	24	21	28	25	1.99
32025550--32025712	40	4.1	40	78	7	170	24	21	28	25	1.99
32035908--32036037	40	3.2	40	77	4	145	25	25	27	21	1.99
32043963--32044172	40	5.2	40	87	2	305	25	24	28	21	1.99
32046252--32046311	31	1.9	31	89	0	93	48	13	3	35	1.59
32046367--32046416	26	1.9	26	100	0	100	36	4	14	46	1.63
32048434--32048503	35	2.0	35	97	0	131	32	8	28	30	1.87
32051387--32051415	3	9.7	3	100	0	58	31	0	0	68	0.89
32054998--32055023	9	2.9	9	100	0	52	23	0	23	53	1.46
32057826--32057869	19	2.3	19	92	0	70	31	2	15	50	1.57
32059269--32059298	13	2.3	13	94	0	51	46	26	16	10	1.78
32067597--32067646	24	2.1	24	100	0	100	46	16	4	34	1.65
32091203--32091254	24	2.2	24	92	0	86	17	17	19	46	1.85
32097374--32097440	22	3.3	22	64	30	58	20	10	22	46	1.81
32097372--32097446	38	2.0	38	97	0	141	21	9	20	49	1.76
32104411--32104645	40	5.9	40	91	0	373	27	22	27	22	1.99
32107388--32107457	27	2.5	28	86	2	97	32	25	14	27	1.94
32107465--32107571	42	2.5	42	96	0	196	22	33	14	28	1.94
32115480--32115589	40	2.8	40	91	1	186	26	22	26	24	2.00
32117333--32117579	40	6.2	40	87	3	313	24	21	28	25	1.99
32118074--32118106	17	2.1	16	88	11	50	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32118153--32118203	21	2.4	22	87	6	70	21	0	7	70	1.12
32118164--32118242	22	3.6	21	75	21	65	26	0	5	68	1.10
32125300--32125483	40	4.6	40	83	0	179	28	21	25	25	1.99
32125297--32125503	80	2.6	80	80	3	238	27	21	25	26	1.99
32125297--32125503	40	5.2	40	77	4	170	27	21	25	26	1.99
32126124--32126242	40	3.0	40	96	0	211	28	20	26	24	1.99
32126128--32126278	40	3.8	40	86	6	193	29	21	27	22	1.99
32134204--32134352	6	24.3	6	76	14	144	48	14	18	18	1.80
32134225--32134352	31	4.4	31	80	13	153	48	14	18	17	1.81
32134204--32134352	55	2.7	55	88	5	203	48	14	18	18	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292