genome.fa.s9.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  169  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50181504--50181590	27	3.2	27	86	3	104	22	14	20	41	1.89
50181479--50181590	54	2.1	54	79	3	118	24	17	19	38	1.93
50186006--50186054	17	2.8	18	74	22	50	24	18	22	34	1.96
50186877--50187027	40	3.8	40	79	6	155	26	23	27	23	2.00
50191359--50191446	44	2.0	44	97	2	169	28	20	30	20	1.98
50194059--50194107	17	2.8	18	74	22	50	24	18	22	34	1.96
50194927--50195077	40	3.8	40	79	6	155	26	23	27	23	2.00
50194963--50195093	40	3.3	40	79	4	149	24	22	26	25	2.00
50200764--50200818	27	2.0	27	96	0	101	23	23	16	36	1.94
50203740--50203817	38	2.1	38	100	0	156	33	21	15	29	1.94
50206719--50206777	27	2.3	26	82	5	66	35	20	22	22	1.96
50206822--50206873	27	2.0	26	84	3	68	34	21	26	17	1.95
50214119--50214178	27	2.3	26	85	2	75	35	20	23	21	1.96
50214140--50214203	33	2.0	32	84	3	83	35	20	23	20	1.96
50224058--50224170	40	2.8	40	79	11	117	26	26	17	29	1.98
50226547--50226649	42	2.5	42	75	0	107	30	23	13	33	1.93
50231554--50231608	28	1.9	29	81	3	67	20	21	40	18	1.92
50233183--50233284	29	3.6	29	87	2	143	26	15	33	24	1.95
50241061--50241219	29	5.6	28	79	7	133	23	16	35	24	1.95
50241061--50241141	27	2.9	27	92	3	126	28	14	32	24	1.95
50241061--50241220	56	2.8	58	77	5	157	24	16	35	24	1.95
50243346--50243410	31	2.1	31	97	2	123	27	6	18	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50246197--50246312	58	2.0	58	94	0	205	42	20	6	31	1.76
50246713--50246757	17	2.5	19	76	20	51	33	24	17	24	1.96
50253724--50253890	40	4.2	40	82	2	185	25	27	21	25	1.99
50253724--50253890	80	2.1	79	83	7	205	25	27	21	25	1.99
50254714--50254759	17	2.5	19	74	22	53	34	23	17	23	1.96
50261144--50261172	14	2.1	14	100	0	58	48	0	13	37	1.43
50263642--50263691	26	1.9	26	83	0	64	18	24	24	34	1.96
50266273--50266492	40	5.6	40	83	5	268	25	26	23	25	2.00
50271758--50271965	40	5.2	40	83	0	209	25	23	25	25	2.00
50271759--50271965	80	2.6	80	83	4	247	25	23	26	25	2.00
50278968--50279175	40	5.2	40	83	0	209	25	23	25	25	2.00
50278969--50279175	80	2.6	80	83	4	247	25	23	26	25	2.00
50280581--50280767	71	2.7	68	93	5	281	18	28	18	34	1.95
50280604--50280767	71	2.3	71	100	0	328	18	28	17	35	1.94
50280604--50280801	71	2.8	70	92	3	276	20	28	17	33	1.95
50288151--50288337	71	2.7	68	93	5	281	18	28	18	34	1.95
50288174--50288337	71	2.3	71	100	0	328	18	28	17	35	1.94
50288174--50288371	71	2.8	70	92	3	276	20	28	17	33	1.95
50292023--50292175	40	3.8	40	75	5	130	25	26	23	24	2.00
50297731--50297941	40	5.3	40	83	3	257	25	26	23	25	2.00
50306166--50306228	26	2.4	27	81	5	83	22	19	23	34	1.96
50308508--50308532	12	2.1	12	100	0	50	60	0	24	16	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50311769--50311971	40	5.1	40	81	2	219	25	20	26	28	1.99
50316584--50316641	27	2.1	27	80	0	62	24	22	13	39	1.90
50317031--50317157	68	1.9	68	85	3	175	37	25	11	25	1.89
50317168--50317270	17	6.1	17	76	0	89	45	22	11	20	1.83
50322972--50323122	42	3.6	42	81	0	149	27	25	17	29	1.97
50322972--50323144	84	2.1	84	80	2	186	28	26	16	28	1.97
50341007--50341070	31	2.1	31	87	0	92	25	21	15	37	1.93
50341282--50341356	23	3.1	25	88	9	120	29	20	18	32	1.96
50341415--50341491	9	7.9	9	72	16	64	35	20	9	35	1.85
50341411--50341493	20	4.2	20	90	0	139	32	19	12	36	1.88
50341422--50341493	11	7.1	11	70	17	66	33	19	11	36	1.87
50341530--50341577	25	1.9	25	86	0	69	25	16	25	33	1.96
50342753--50342824	27	2.7	27	77	0	81	29	8	22	40	1.83
50342815--50343345	27	19.7	27	85	4	570	40	8	22	28	1.84
50342815--50343345	81	6.6	81	86	3	676	40	8	22	28	1.84
50342817--50343345	54	9.8	54	85	2	672	40	8	22	28	1.84
50351188--50352490	659	2.0	648	82	4	1591	32	13	19	34	1.90
50359635--50359690	22	2.6	21	81	10	60	37	16	8	37	1.80
50363453--50363495	16	2.7	16	86	10	61	39	0	6	53	1.28
50363451--50363531	29	2.5	33	75	16	82	44	1	4	49	1.32
50373985--50374164	40	4.5	40	85	5	197	26	20	26	27	1.99
50373983--50374183	40	5.0	40	82	8	110	26	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50374013--50374197	80	2.3	80	77	11	184	28	20	25	26	1.99
50379364--50379583	47	4.7	46	73	12	162	23	30	21	25	1.99
50383809--50383861	23	2.3	23	76	0	61	18	16	22	41	1.90
50383810--50383868	23	2.5	22	72	20	57	18	16	20	44	1.87
50389148--50389192	21	2.1	21	100	0	90	26	8	24	40	1.84
50391953--50392341	47	8.3	47	93	0	616	27	30	8	33	1.86
50392263--50392338	22	3.3	22	66	16	64	26	30	10	32	1.90
50398768--50398815	25	1.9	25	86	0	69	33	25	16	25	1.96
50398859--50398917	20	3.0	20	97	0	109	37	10	20	32	1.86
50398863--50398917	11	5.4	11	70	16	55	38	10	20	30	1.87
50398968--50399086	24	5.0	24	88	5	170	28	21	22	26	1.99
50398968--50399086	47	2.5	48	89	5	170	28	21	22	26	1.99
50399278--50399341	31	2.1	31	96	0	119	39	15	21	23	1.92
50406831--50406878	25	1.9	25	86	0	69	33	25	16	25	1.96
50406922--50406980	20	3.0	20	97	0	109	37	10	20	32	1.86
50406926--50406980	11	5.4	11	70	16	55	38	10	20	30	1.87
50407031--50407149	24	5.0	24	88	5	170	28	21	22	26	1.99
50407031--50407149	47	2.5	48	89	5	170	28	21	22	26	1.99
50407340--50407403	31	2.1	31	96	0	119	39	15	21	23	1.92
50413078--50413102	12	2.1	12	100	0	50	16	8	16	60	1.58
50413818--50414136	47	6.8	46	76	14	251	26	18	30	23	1.98
50413818--50414136	94	3.4	92	78	11	303	26	18	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50415721--50415766	22	2.1	22	91	0	74	17	6	34	41	1.75
50418360--50418386	14	1.9	14	100	0	54	22	29	40	7	1.81
50420760--50420784	12	2.1	12	100	0	50	16	8	16	60	1.58
50429314--50429353	2	20.0	2	94	0	71	50	2	0	47	1.14
50429560--50429663	43	2.4	43	82	6	122	27	15	22	34	1.94
50434091--50434131	15	3.1	14	80	19	52	36	0	0	63	0.95
50436646--50436813	40	4.2	40	82	3	189	26	26	22	25	2.00
50450174--50450198	8	3.1	8	100	0	50	52	24	24	0	1.48
50455736--50455783	25	2.0	25	83	4	62	35	16	18	29	1.93
50459411--50459541	40	3.2	40	81	3	165	25	27	22	24	2.00
50459411--50459578	81	2.1	79	82	8	198	23	26	22	26	2.00
50467434--50467523	40	2.2	40	84	3	128	24	28	21	25	1.99
50475391--50475654	49	5.5	48	73	7	185	30	19	25	24	1.98
50475532--50475697	49	3.4	47	73	8	138	29	19	26	24	1.99
50475915--50475971	28	2.0	28	100	0	114	35	3	21	40	1.70
50479460--50479626	40	4.2	40	82	2	185	25	27	21	25	1.99
50479460--50479626	80	2.1	79	83	7	205	25	27	21	25	1.99
50480451--50480496	17	2.5	19	74	22	53	34	23	17	23	1.96
50487444--50487610	40	4.2	40	82	2	185	25	27	21	25	1.99
50487444--50487610	80	2.1	79	83	7	205	25	27	21	25	1.99
50488436--50488481	17	2.5	19	74	22	53	34	23	17	23	1.96
50491669--50491704	18	2.0	18	88	0	54	36	13	25	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50496898--50497038	27	5.2	27	81	13	166	34	21	23	19	1.96
50496898--50497041	54	2.7	54	93	2	236	34	22	23	19	1.96
50499041--50499071	14	2.2	14	100	0	62	25	19	6	48	1.72
50500709--50500761	15	3.4	15	76	19	54	73	15	11	0	1.09
50506213--50506254	19	2.2	20	86	4	59	26	19	7	47	1.74
50517087--50517252	66	2.5	66	85	1	228	31	19	10	37	1.87
50518567--50518608	19	2.2	20	91	4	68	73	14	11	0	1.09
50524002--50524187	40	4.7	40	85	6	209	25	26	22	25	2.00
50526768--50526887	27	4.4	27	93	0	195	39	16	18	25	1.91
50527250--50527342	33	2.8	34	76	15	95	22	22	23	31	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292