genome.fa.s9.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  124  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37092906--37093268	46	7.8	46	72	6	293	28	28	20	22	1.98
37092914--37093270	93	3.8	93	90	0	563	28	29	20	21	1.98
37101571--37101802	40	5.8	40	83	7	258	30	25	21	23	1.99
37101571--37101802	80	2.9	80	87	3	333	30	25	21	23	1.99
37109944--37110165	40	5.6	40	89	3	333	27	26	22	22	1.99
37109944--37110165	80	2.8	80	93	0	374	27	26	22	22	1.99
37115865--37115932	34	2.0	34	83	11	86	29	23	20	26	1.99
37134737--37134789	25	2.1	25	89	0	79	33	26	15	24	1.95
37137298--37137511	24	9.0	24	91	5	328	25	21	24	28	1.99
37137298--37137510	71	3.0	71	91	5	324	25	21	24	28	1.99
37137623--37137671	25	2.0	25	83	0	62	26	14	24	34	1.94
37138846--37138931	27	3.2	27	79	0	100	30	6	24	38	1.82
37138910--37139255	27	12.8	27	89	1	478	39	8	24	27	1.84
37146639--37146742	47	2.2	47	83	8	124	23	27	18	30	1.97
37148736--37148889	40	3.8	40	80	1	157	25	26	21	26	1.99
37156644--37156692	17	2.8	18	74	22	50	24	18	22	34	1.96
37157514--37157680	40	4.2	40	79	6	169	25	21	27	25	1.99
37164944--37164992	17	2.8	18	74	22	50	24	18	22	34	1.96
37165818--37165984	40	4.2	40	79	6	169	25	21	27	25	1.99
37169015--37169146	47	2.8	49	80	4	162	23	31	18	27	1.97
37169016--37169186	48	3.6	48	75	6	154	23	28	18	29	1.98
37171747--37171940	96	2.0	96	87	0	280	13	32	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37173219--37173291	28	2.6	28	95	0	128	24	31	19	24	1.98
37178689--37178792	51	2.0	51	100	0	208	31	26	12	28	1.93
37180244--37180467	112	2.0	112	95	0	403	26	5	22	44	1.75
37187239--37187323	28	3.1	28	79	3	84	38	21	16	23	1.92
37187686--37187755	33	2.1	34	86	2	97	21	22	27	28	1.99
37190829--37190964	48	2.8	49	78	4	134	17	16	30	34	1.93
37192211--37192274	31	2.1	31	85	5	85	25	23	14	37	1.92
37192467--37192637	25	7.0	24	85	10	188	27	22	21	28	1.99
37192494--37192635	50	2.9	48	89	5	212	28	23	21	26	1.99
37192695--37192751	9	5.9	9	73	15	51	35	21	8	35	1.84
37192683--37192753	20	3.5	20	94	0	124	32	21	11	35	1.89
37192688--37192742	11	5.4	11	70	16	55	30	20	12	36	1.90
37192790--37192837	25	1.9	25	86	0	69	25	16	25	33	1.96
37194118--37194241	56	2.3	54	80	2	140	31	4	18	45	1.71
37194197--37194377	27	6.8	27	81	5	181	30	8	20	40	1.83
37194188--37194384	81	2.5	80	78	8	220	30	8	19	40	1.82
37194174--37194445	27	10.1	27	80	4	126	32	8	20	38	1.82
37194369--37194472	27	3.9	27	84	0	136	40	6	23	29	1.80
37194343--37194496	54	2.9	53	79	0	164	36	7	23	32	1.83
37195987--37196050	31	2.1	31	93	0	110	26	23	12	37	1.90
37196243--37196436	25	8.0	23	84	10	237	27	23	20	28	1.99
37196487--37196592	20	5.3	20	95	0	194	32	19	12	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37196629--37196676	25	1.9	25	91	0	78	25	14	25	35	1.94
37197959--37198217	53	4.8	54	79	5	161	30	7	19	42	1.79
37198014--37198217	53	3.8	52	80	4	176	29	8	20	42	1.81
37197928--37198231	27	11.3	27	75	6	179	31	8	20	39	1.83
37198014--37198231	80	2.7	80	78	6	235	29	8	21	40	1.82
37198210--37198339	27	4.8	27	85	0	170	37	7	23	30	1.83
37198182--37198339	54	2.9	54	82	0	172	36	7	23	32	1.83
37198201--37198377	81	2.2	81	77	0	183	35	7	22	34	1.83
37198293--37199397	550	2.0	550	97	0	2066	31	25	17	25	1.97
37201636--37201698	30	2.1	31	87	3	92	23	23	14	38	1.92
37201891--37202109	25	9.0	23	83	10	235	27	21	21	30	1.98
37201918--37202104	50	3.8	49	87	4	263	28	21	21	27	1.99
37201913--37202104	75	2.6	71	84	9	260	28	21	21	28	1.98
37202155--37202225	20	3.5	20	92	0	115	30	21	12	35	1.91
37202262--37202309	25	1.9	25	91	0	78	25	18	25	31	1.98
37203465--37203529	27	2.4	27	82	5	78	23	23	16	36	1.94
37203559--37203848	27	10.8	27	76	6	221	30	9	20	40	1.84
37203559--37203917	27	13.3	27	76	6	156	32	9	20	37	1.84
37203840--37203969	27	4.9	27	86	0	163	40	7	22	30	1.82
37206812--37207018	53	3.8	55	75	3	179	21	24	16	37	1.94
37209122--37209315	27	7.2	27	90	5	250	33	22	24	19	1.97
37210933--37211042	26	4.2	26	97	0	184	36	24	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217930--37218071	40	3.5	40	83	1	124	27	23	26	22	1.99
37217969--37218097	40	3.2	39	84	6	152	24	22	27	25	2.00
37221103--37221146	20	2.2	20	100	0	88	36	11	18	34	1.86
37221200--37221365	23	7.1	23	90	2	242	28	21	21	27	1.99
37221579--37221642	31	2.1	31	93	0	110	37	15	23	23	1.93
37227462--37227576	27	4.1	29	77	11	100	36	20	23	19	1.95
37227462--37227576	55	2.1	56	84	11	148	36	20	23	19	1.95
37227487--37227576	27	3.2	28	78	13	105	34	22	23	20	1.97
37227682--37227774	28	3.3	28	92	3	152	31	7	27	33	1.85
37233158--37233190	9	3.3	10	84	16	50	51	9	9	30	1.64
37234245--37234359	55	2.1	56	83	8	146	34	21	24	19	1.96
37234270--37234359	27	3.2	27	85	7	119	32	23	24	20	1.98
37234484--37234549	28	2.4	28	97	2	125	33	9	24	33	1.87
37234798--37234829	8	4.0	8	91	0	55	3	25	25	46	1.67
37236701--37236869	46	3.7	43	79	10	160	27	19	28	23	1.98
37244216--37244345	66	1.9	68	85	7	183	33	16	29	20	1.94
37246983--37247014	12	2.7	12	100	0	64	25	31	28	15	1.96
37249648--37249756	54	2.0	54	98	0	209	29	15	26	28	1.96
37254995--37255150	43	3.7	42	72	10	138	25	18	25	31	1.98
37255864--37255908	23	1.9	24	86	4	65	20	6	20	53	1.67
37256595--37256649	23	2.4	23	87	0	74	18	27	18	36	1.94
37258496--37258645	43	3.5	42	74	13	119	32	22	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37260728--37260839	42	2.6	44	81	4	120	34	25	15	25	1.94
37260697--37260851	43	3.6	44	74	4	127	31	24	17	26	1.97
37263840--37263916	9	7.9	9	72	16	64	35	9	20	35	1.85
37263849--37263920	11	7.1	11	70	17	66	36	12	19	31	1.89
37263838--37263920	20	4.2	20	96	0	157	36	12	19	32	1.88
37263974--37264091	23	5.0	24	87	9	163	27	21	22	27	1.99
37268640--37268703	31	2.1	31	84	0	83	26	21	14	37	1.92
37268916--37269062	24	6.2	24	84	3	190	28	19	21	29	1.98
37268918--37269061	47	3.1	46	82	6	173	29	19	22	29	1.98
37269112--37269178	20	3.3	20	93	0	116	32	20	11	34	1.90
37269112--37269167	11	5.5	11	71	16	57	32	19	12	35	1.89
37276857--37277023	40	4.2	40	79	6	169	26	22	26	24	2.00
37284836--37285002	40	4.2	40	79	6	169	26	22	26	24	2.00
37288191--37288357	27	6.2	27	88	3	212	33	22	25	19	1.97
37288191--37288360	54	3.1	54	89	1	243	34	22	24	18	1.96
37288459--37288534	26	2.8	27	80	11	84	30	13	23	32	1.93
37289975--37290058	26	3.2	26	96	0	150	35	23	5	34	1.80
37295262--37295295	17	1.9	18	94	5	61	20	32	35	11	1.89
37297021--37297072	20	2.5	22	87	9	74	40	23	23	13	1.89
37300481--37300544	27	2.4	26	85	10	85	40	18	23	17	1.91
37300499--37300559	26	2.3	27	85	2	79	37	24	22	14	1.92
37300718--37300782	22	3.0	22	75	8	69	30	21	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37301156--37301640	27	18.0	27	82	6	545	26	19	18	36	1.94
37301155--37301639	54	9.0	54	87	3	654	26	19	18	36	1.94
37303445--37303480	18	2.0	18	94	0	63	44	5	19	30	1.73
37303809--37304023	27	8.0	27	82	4	245	40	20	15	24	1.91
37304012--37304154	27	5.3	27	86	1	153	23	15	20	41	1.90
37303836--37304023	81	2.3	81	87	3	279	39	19	15	25	1.90
37304001--37304109	54	2.0	53	83	1	137	28	14	17	39	1.89
37304013--37304154	53	2.6	54	84	5	180	22	15	20	41	1.90
37308722--37308834	43	2.6	43	82	8	124	26	16	23	32	1.96
37318660--37318828	88	1.9	89	85	1	232	27	17	19	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292