genome.fa.s9.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  153  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45419407--45419578	93	1.8	93	96	0	317	29	29	20	21	1.98
45419402--45419575	46	3.8	46	76	13	194	30	28	20	21	1.98
45426968--45427049	31	2.7	31	86	1	112	24	26	18	30	1.98
45427259--45427318	26	2.4	25	86	10	86	30	21	20	28	1.98
45427271--45427357	26	3.4	26	87	4	124	28	20	26	24	1.99
45427498--45427545	25	1.9	25	86	0	69	29	16	22	31	1.96
45429704--45429809	45	2.4	45	93	6	180	54	13	1	30	1.49
45431790--45431877	31	2.9	30	80	6	106	21	26	18	34	1.96
45432104--45432189	26	3.4	25	88	3	120	26	23	22	27	1.99
45432320--45432367	25	1.9	25	86	0	69	29	16	22	31	1.96
45434431--45434455	3	8.3	3	100	0	50	64	0	0	36	0.94
45434509--45434533	12	2.1	12	100	0	50	52	8	0	40	1.31
45434600--45434709	50	2.3	47	84	10	157	47	8	6	38	1.59
45434631--45434712	25	3.4	23	66	25	62	43	8	6	41	1.60
45434636--45434715	24	3.2	24	65	25	67	38	10	6	45	1.63
45434617--45434717	50	2.0	50	100	0	202	44	7	5	41	1.58
45436567--45436650	31	2.7	31	83	1	116	22	23	19	34	1.96
45436857--45436916	26	2.4	25	83	10	77	26	21	20	31	1.98
45436869--45436965	26	3.9	25	77	6	90	23	20	25	29	1.99
45436907--45436965	24	2.4	25	80	8	68	20	22	25	32	1.98
45437008--45437045	20	2.0	19	90	10	60	36	18	10	34	1.85
45439332--45439356	12	2.1	12	100	0	50	52	8	0	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45452071--45452152	31	2.7	31	86	1	112	24	25	19	30	1.98
45452362--45452446	26	3.3	26	88	3	102	28	21	21	29	1.98
45452375--45452470	26	3.8	26	90	2	135	26	22	25	26	2.00
45455296--45455833	49	11.1	49	94	3	928	32	8	29	29	1.87
45455299--45455844	194	2.8	193	94	2	938	32	8	29	29	1.87
45458133--45458373	40	6.1	40	96	0	412	23	22	29	24	1.99
45463306--45463435	40	3.2	40	82	4	165	23	24	28	23	2.00
45471134--45471306	40	4.5	39	88	8	230	24	28	22	23	1.99
45479174--45479351	40	4.5	40	87	3	236	26	26	21	24	1.99
45483168--45483278	27	4.1	26	81	7	123	16	22	23	37	1.93
45483168--45483278	54	2.1	54	84	3	143	16	22	23	37	1.93
45485880--45485988	58	1.9	57	83	5	139	33	19	17	30	1.95
45489205--45489412	40	5.2	40	81	2	202	25	27	22	24	2.00
45496442--45496649	40	5.2	40	83	2	211	25	26	23	25	2.00
45497996--45498031	18	1.9	19	88	5	56	63	0	25	11	1.27
45499344--45499476	59	2.2	60	90	1	205	35	14	24	25	1.93
45499374--45499476	29	3.5	29	96	2	188	36	14	24	24	1.93
45501051--45501102	21	2.5	20	76	20	52	40	15	9	34	1.80
45505947--45506130	40	4.6	40	82	4	174	28	22	26	23	1.99
45507434--45507477	19	2.4	18	85	7	54	40	9	0	50	1.34
45511705--45511748	19	2.4	18	85	7	54	40	9	0	50	1.34
45518499--45518568	27	2.6	27	95	2	122	30	27	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45526531--45526600	27	2.6	27	95	2	122	30	27	14	28	1.95
45535027--45535065	16	2.5	16	91	4	62	25	12	20	41	1.88
45534971--45535121	72	2.1	72	86	1	205	25	12	23	38	1.90
45535646--45535670	13	1.9	13	100	0	50	16	0	28	56	1.41
45537819--45538193	48	7.9	47	74	11	218	27	18	28	25	1.98
45537819--45538037	46	4.7	46	79	10	173	28	17	30	23	1.97
45544526--45544667	57	2.5	56	86	5	178	29	19	21	29	1.98
45547710--45547814	42	2.5	42	77	0	111	31	21	11	35	1.89
45557581--45557637	16	3.5	16	82	17	73	73	0	21	5	1.02
45565342--45565399	25	2.3	25	87	0	80	18	29	32	18	1.96
45565361--45565403	13	3.4	13	74	6	52	13	27	34	23	1.93
45579605--45579812	40	5.2	39	80	5	211	25	25	23	25	2.00
45579605--45579811	80	2.6	80	83	3	247	25	26	23	24	2.00
45585343--45585540	71	2.8	70	91	3	285	33	17	28	20	1.95
45585377--45585540	71	2.3	71	98	0	319	35	17	28	19	1.94
45592496--45592526	2	15.5	2	100	0	62	51	0	0	48	1.00
45601245--45601295	25	2.0	25	100	0	102	27	15	15	41	1.88
45604935--45604960	9	2.9	9	100	0	52	69	0	23	7	1.14
45606105--45606149	23	1.9	24	86	4	65	22	4	48	24	1.68
45606223--45606290	34	2.0	34	85	5	93	27	22	27	22	1.99
45621189--45621356	40	4.2	40	82	0	194	26	26	22	25	2.00
45621189--45621356	80	2.1	80	84	3	214	26	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45623424--45623480	29	2.0	29	82	0	69	33	22	5	38	1.77
45631813--45632020	40	5.2	40	85	2	258	26	26	21	25	1.99
45636208--45636299	48	1.9	48	97	0	175	29	1	19	50	1.55
45636208--45636313	48	2.2	48	91	3	169	29	0	20	49	1.56
45638101--45638208	52	2.1	51	82	5	128	44	9	18	27	1.80
45639189--45639289	46	2.2	46	98	0	193	36	25	11	25	1.90
45639189--45639304	46	2.5	46	91	2	162	38	24	10	26	1.87
45642505--45642585	37	2.2	38	91	4	130	34	13	20	30	1.92
45646745--45646774	14	2.1	14	100	0	60	20	13	26	40	1.89
45650280--45650554	49	5.7	49	80	7	262	24	29	20	26	1.99
45667623--45667677	17	3.1	17	84	5	65	45	14	3	36	1.63
45668767--45668800	15	2.2	16	89	5	52	61	5	0	32	1.20
45674972--45675040	36	1.9	35	91	2	111	27	8	15	47	1.75
45679917--45680036	63	1.9	63	92	0	204	44	19	16	20	1.87
45681412--45681461	25	2.0	25	100	0	100	16	28	12	44	1.83
45685699--45685723	1	25.0	1	100	0	50	100	0	0	0	0.00
45686806--45686869	13	5.2	13	74	11	71	71	0	6	21	1.07
45686806--45686872	24	2.7	25	90	4	118	70	0	5	23	1.09
45691279--45691550	49	5.7	48	91	2	379	33	8	29	27	1.87
45694758--45694810	22	2.4	22	74	0	61	16	18	22	41	1.90
45694790--45694919	38	3.4	38	85	4	181	20	16	26	36	1.94
45696209--45696315	42	2.5	43	78	6	119	28	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45696563--45696629	32	2.1	32	94	0	116	23	8	22	44	1.81
45704388--45704417	16	1.9	16	93	6	53	30	0	20	50	1.49
45709259--45709301	22	2.0	22	86	4	61	32	0	2	65	1.06
45718890--45718950	25	2.4	25	88	0	86	21	26	16	36	1.94
45720202--45720248	22	2.0	23	84	15	62	42	21	10	25	1.85
45727715--45727784	28	2.5	28	83	0	104	51	15	4	28	1.62
45733021--45733078	28	2.1	28	90	6	91	18	5	5	70	1.25
45739439--45739722	48	5.9	48	77	2	257	26	24	19	29	1.98
45739467--45739722	96	2.7	96	82	4	320	26	25	19	29	1.98
45740861--45740958	40	2.4	42	83	11	114	25	17	28	28	1.97
45741813--45742547	367	2.0	367	100	0	1470	26	20	26	27	1.99
45743178--45743216	13	2.8	14	84	7	53	51	0	0	48	1.00
45743749--45743789	12	3.3	13	83	10	50	48	0	7	43	1.30
45747164--45747234	28	2.5	28	88	0	106	50	15	8	25	1.72
45754576--45754674	38	2.6	38	81	12	114	40	5	8	46	1.55
45763566--45763614	3	16.3	3	100	0	98	67	0	0	32	0.91
45765816--45765876	32	1.9	32	96	0	113	40	8	0	50	1.32
45767444--45767496	20	2.7	20	79	2	63	26	3	3	66	1.26
45775900--45775930	7	4.4	7	95	0	53	25	3	0	70	1.02
45779391--45779432	13	3.5	13	78	18	54	40	0	11	47	1.40
45779384--45779434	23	2.3	22	90	6	84	43	0	9	47	1.36
45783804--45783850	22	2.2	22	88	7	71	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45786801--45786836	18	1.9	19	88	5	56	52	2	8	36	1.46
45791977--45792065	28	3.3	28	80	10	114	37	14	22	25	1.92
45792092--45792240	51	2.9	51	89	2	219	31	14	24	28	1.95
45793185--45793237	25	2.1	25	92	0	88	37	26	3	32	1.74
45796912--45797328	48	8.6	49	79	7	401	25	29	18	26	1.98
45796912--45797338	96	4.4	96	84	2	471	25	29	18	26	1.98
45796962--45797338	144	2.6	142	85	5	490	26	29	18	25	1.98
45800490--45800558	24	2.6	27	82	13	90	39	13	26	21	1.90
45800490--45800578	28	3.3	27	83	9	103	34	14	25	24	1.94
45800604--45800773	51	3.3	51	89	0	277	33	12	22	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292