genome.fa.s9.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  103  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31494687--31494900	110	1.9	110	98	0	410	30	27	9	31	1.89
31498499--31498577	31	2.5	31	97	0	149	26	25	18	29	1.98
31498601--31498692	42	2.2	42	92	0	148	34	21	14	29	1.93
31498837--31499011	26	6.8	26	84	3	203	29	20	22	28	1.98
31499798--31499921	27	4.6	26	82	6	124	19	20	23	36	1.95
31499798--31499924	54	2.4	54	82	5	157	19	20	22	37	1.95
31499965--31500204	27	8.9	26	78	7	167	33	9	16	40	1.81
31500054--31500204	81	1.9	80	91	4	250	31	8	18	41	1.81
31500046--31500218	54	3.2	54	84	2	197	33	8	19	38	1.81
31500196--31500326	27	4.9	27	91	0	199	40	10	21	27	1.86
31500063--31500229	81	2.1	81	82	5	196	34	8	18	37	1.82
31501754--31501817	29	2.3	27	89	7	101	18	9	28	43	1.81
31501754--31501823	28	2.5	29	93	4	117	18	10	27	44	1.81
31502351--31502474	27	4.6	26	78	8	115	20	20	22	36	1.95
31502351--31502477	54	2.4	54	81	7	150	20	20	22	37	1.95
31502515--31502774	27	9.6	27	77	3	182	31	9	19	39	1.84
31502609--31502760	81	1.9	81	94	0	268	30	8	19	41	1.81
31502608--31502774	54	3.1	54	85	2	210	30	8	21	39	1.83
31502752--31502882	27	4.9	27	91	0	199	40	10	21	27	1.86
31502618--31502785	81	2.1	81	84	2	212	33	8	19	38	1.83
31506920--31506962	17	2.4	18	80	3	52	67	2	4	25	1.22
31511849--31511916	29	2.3	29	94	0	118	32	30	13	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31512125--31512160	16	2.2	16	95	0	63	13	25	13	47	1.80
31515999--31516140	40	3.5	39	85	7	178	35	24	14	25	1.93
31529242--31529343	43	2.4	43	85	3	125	26	17	24	31	1.97
31529261--31529381	43	2.8	43	89	0	179	29	19	26	23	1.98
31530155--31531003	23	37.1	23	77	7	667	38	23	6	31	1.80
31530155--31531003	160	5.3	161	81	6	739	38	23	6	31	1.80
31531915--31531971	22	2.5	23	77	8	64	47	22	1	28	1.61
31531853--31532076	23	9.8	23	75	10	172	41	20	4	33	1.73
31531853--31532064	46	4.6	45	74	10	198	41	21	3	33	1.71
31534258--31534317	30	2.0	30	86	0	84	40	8	23	28	1.83
31541785--31541839	28	1.9	29	85	3	76	40	9	21	29	1.84
31542256--31542380	46	2.7	46	84	8	139	22	21	27	28	1.99
31545458--31545484	14	1.9	14	100	0	54	33	59	0	7	1.25
31545458--31545491	8	4.5	8	85	14	54	35	55	0	8	1.31
31545458--31545502	22	2.0	22	86	0	63	42	46	0	11	1.39
31545766--31545819	7	7.6	7	81	4	54	48	29	0	22	1.51
31545773--31545811	15	2.7	14	84	7	51	46	30	0	23	1.53
31545766--31545814	22	2.3	22	89	3	73	46	32	0	20	1.51
31545760--31545819	29	2.1	29	83	0	75	46	31	0	21	1.52
31546103--31546209	40	2.7	40	82	7	112	32	19	24	23	1.97
31546330--31546386	26	2.1	27	87	6	89	31	24	12	31	1.92
31546443--31546559	40	2.9	40	83	8	148	31	24	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31548433--31548513	39	2.1	39	95	0	144	40	18	17	23	1.91
31551678--31551767	45	2.0	45	95	0	162	35	24	15	24	1.94
31553372--31553518	61	2.4	61	77	0	150	29	18	15	36	1.92
31556138--31556268	48	2.8	46	84	5	172	32	14	21	31	1.93
31556232--31556308	38	2.0	38	92	0	127	28	14	27	29	1.95
31559575--31559680	41	2.6	41	90	3	169	24	24	25	25	2.00
31564638--31564788	40	3.8	40	77	11	132	26	23	26	23	2.00
31564678--31564804	40	3.2	40	77	4	132	24	24	28	22	2.00
31570346--31570695	49	7.3	49	93	2	552	33	8	29	29	1.86
31576281--31576350	27	2.5	28	86	2	97	32	25	14	27	1.94
31576358--31576464	42	2.5	42	96	0	196	22	33	14	28	1.94
31590608--31590774	46	3.6	46	78	15	209	31	29	19	20	1.97
31590614--31590784	92	1.9	92	96	0	315	29	30	19	20	1.97
31597429--31597527	28	3.5	29	80	6	105	30	26	15	28	1.96
31605078--31605176	28	3.5	29	80	6	105	30	26	15	28	1.96
31609706--31609763	25	2.3	26	79	8	66	48	12	10	29	1.73
31609749--31609845	38	2.5	38	85	6	115	44	12	9	34	1.74
31612215--31612254	21	2.0	20	90	5	62	37	5	0	57	1.21
31614123--31614218	20	4.8	20	92	0	156	42	27	16	13	1.86
31614107--31614218	40	2.8	40	88	0	161	41	25	17	14	1.88
31616021--31616220	40	5.0	40	88	4	273	22	23	28	26	1.99
31620337--31620386	25	2.0	24	84	3	64	46	14	10	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31620373--31620469	38	2.5	38	86	3	122	44	12	9	34	1.74
31625082--31625155	29	2.5	30	82	8	80	37	0	6	55	1.27
31629680--31630367	46	15.0	46	86	5	865	41	13	22	22	1.88
31629681--31630231	284	2.0	276	90	2	877	41	12	22	23	1.88
31629966--31630385	137	3.1	137	84	3	504	42	13	22	21	1.87
31630648--31630680	17	2.0	17	94	5	59	48	0	15	36	1.45
31632128--31632230	53	1.9	53	86	0	143	34	12	24	28	1.92
31632381--31632531	29	5.3	29	63	12	87	31	17	23	27	1.97
31632373--31632544	57	3.0	56	79	5	202	32	17	22	27	1.96
31634930--31635262	46	7.5	46	79	10	347	20	23	14	42	1.88
31634962--31635116	79	2.0	80	93	1	267	17	24	17	40	1.90
31637024--31637092	30	2.3	30	83	14	81	60	2	0	36	1.11
31638214--31638266	28	2.0	27	88	7	81	58	0	9	32	1.30
31638224--31638526	153	2.0	151	85	5	414	42	4	10	41	1.61
31639056--31639096	21	2.0	21	85	0	55	19	7	0	73	1.07
31642483--31642528	21	2.2	21	84	7	58	21	4	0	73	1.00
31643804--31643833	12	2.5	12	94	0	51	46	6	0	46	1.29
31643967--31644017	16	3.2	16	73	18	52	19	25	13	41	1.88
31643963--31644043	32	2.5	32	80	4	101	24	23	12	39	1.89
31644460--31644596	67	2.0	67	97	0	256	51	16	8	23	1.71
31647053--31647111	24	2.5	24	100	0	118	30	20	3	45	1.67
31647901--31647957	30	1.9	30	88	0	87	28	22	7	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31655692--31655720	2	15.0	2	92	7	51	51	0	0	48	1.00
31657484--31657535	20	2.8	18	78	21	63	51	3	1	42	1.31
31657887--31657933	20	2.3	20	85	0	58	21	12	17	48	1.79
31664416--31664597	40	4.6	40	92	2	287	25	26	22	25	2.00
31667833--31668087	136	1.9	136	83	3	334	38	17	21	22	1.93
31667804--31668106	68	4.5	68	76	0	293	37	16	22	23	1.94
31679262--31679311	25	2.0	25	96	0	91	58	12	14	16	1.64
31680328--31680379	27	2.0	26	85	7	70	21	21	17	40	1.91
31680357--31680473	48	2.4	47	75	10	121	18	23	17	40	1.91
31680359--31680472	24	4.8	23	67	12	70	18	23	17	40	1.91
31684746--31684788	2	21.5	2	100	0	86	48	0	0	51	1.00
31686775--31686806	2	16.0	2	100	0	64	50	0	0	50	1.00
31697748--31698232	68	7.1	68	77	4	440	38	18	18	24	1.93
31697748--31698215	135	3.5	135	85	3	566	38	17	18	25	1.93
31697745--31698232	271	1.8	271	80	5	592	38	18	18	24	1.93
31703452--31703490	20	2.0	20	85	10	53	35	20	0	43	1.52
31708966--31709105	43	3.3	42	75	13	135	27	25	18	27	1.98
31711376--31711416	22	1.9	21	85	5	55	17	41	21	19	1.90
31718122--31718163	21	2.0	21	100	0	84	42	0	4	52	1.22
31719872--31719949	29	2.7	29	83	0	102	21	33	17	26	1.96
31721098--31721129	16	2.1	16	88	11	50	9	12	0	78	0.97
31730506--31730547	2	21.0	2	95	0	75	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31732988--31733164	47	3.8	47	77	13	195	21	19	28	30	1.98
31737138--31737208	5	13.6	5	78	19	74	19	2	1	76	0.99
31737129--31737210	31	2.6	31	83	12	98	20	2	3	73	1.11
31752193--31752409	46	4.7	45	79	11	201	23	28	20	28	1.99
31752142--31752417	94	2.9	92	78	10	260	23	28	20	28	1.99
31755597--31755631	13	2.8	12	83	8	52	8	2	17	71	1.23
31756235--31756267	16	1.9	18	88	11	52	36	3	0	60	1.12
31756908--31756948	21	2.0	21	85	0	55	26	0	60	12	1.31
31763366--31763432	33	2.0	33	97	0	125	26	29	11	31	1.92
31766191--31766240	20	2.5	20	83	3	64	50	10	12	28	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292