genome.fa.s9.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  127  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37804764--37804940	96	1.8	96	89	2	275	22	30	20	25	1.98
37805230--37805267	7	5.4	7	87	0	58	15	0	34	50	1.45
37805230--37805272	21	2.0	21	95	0	77	16	0	34	48	1.46
37808614--37808924	39	8.0	39	94	0	514	22	26	28	22	1.99
37812121--37812184	30	2.1	30	88	5	94	21	34	21	21	1.97
37812972--37813228	48	5.4	48	74	8	202	24	28	19	27	1.98
37813062--37813238	96	1.8	96	87	0	264	25	26	19	28	1.99
37812983--37813249	96	2.8	96	80	2	261	25	28	18	28	1.98
37814671--37814880	52	4.1	52	82	3	210	37	16	14	31	1.88
37814911--37814977	19	3.5	19	85	2	89	26	26	14	31	1.95
37818190--37818250	29	2.1	28	85	8	79	4	27	3	63	1.30
37820396--37820581	97	1.9	97	83	2	239	44	18	7	29	1.77
37822874--37823059	40	4.7	40	85	5	200	25	20	26	26	1.99
37824613--37824705	29	3.2	29	66	22	86	33	9	16	40	1.81
37824590--37824705	58	2.0	58	100	0	232	32	10	15	41	1.81
37824566--37824745	58	3.4	54	83	13	187	35	10	16	37	1.83
37824758--37824861	19	5.2	19	79	6	91	30	26	9	32	1.89
37827275--37827340	26	2.5	26	87	0	96	21	18	28	31	1.96
37829179--37829249	28	2.6	28	76	8	74	53	7	8	30	1.58
37845301--37845505	40	5.2	40	86	4	281	22	22	27	27	1.99
37845301--37845505	80	2.6	80	90	2	315	22	22	27	27	1.99
37848078--37848113	15	2.5	14	86	8	54	66	0	11	22	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37849351--37849486	24	5.7	24	78	6	134	22	12	29	35	1.91
37849351--37849484	72	1.9	72	85	0	187	23	11	29	35	1.90
37849351--37849512	72	2.2	72	81	0	180	23	12	30	33	1.92
37856058--37856093	15	2.5	14	86	8	54	66	0	11	22	1.22
37858663--37858723	20	3.0	20	92	0	104	34	11	21	32	1.89
37858772--37858957	24	8.0	24	91	5	251	29	21	22	26	1.99
37859148--37859210	31	2.1	31	90	3	101	36	15	23	23	1.94
37866825--37866881	11	5.5	11	72	16	59	36	12	19	31	1.89
37866820--37866881	20	3.1	20	95	0	115	35	11	19	33	1.87
37866928--37867093	24	7.0	23	91	5	237	28	22	22	26	1.99
37866928--37867093	69	2.3	70	89	6	246	28	22	22	26	1.99
37867282--37867344	31	2.1	31	90	3	101	36	15	23	23	1.94
37868513--37868648	24	5.7	24	83	3	150	23	13	28	34	1.92
37868513--37868649	72	1.9	72	86	0	193	23	13	29	34	1.92
37868513--37868674	72	2.2	72	81	0	180	24	13	29	32	1.93
37873082--37873202	64	1.9	64	84	0	161	20	26	23	28	1.99
37881137--37881300	40	4.1	40	82	4	179	25	28	21	25	1.99
37881123--37881300	80	2.2	80	82	3	207	24	27	21	25	2.00
37885428--37885654	113	2.0	113	92	3	377	40	8	4	45	1.57
37888371--37888396	5	5.2	5	100	0	52	19	0	0	80	0.71
37889348--37889373	13	2.0	13	100	0	52	30	15	15	38	1.88
37890943--37890980	18	2.1	18	90	0	58	13	39	15	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37894652--37894844	40	4.9	40	89	3	266	23	26	23	26	2.00
37894650--37894844	78	2.5	78	86	5	266	23	26	23	26	2.00
37902658--37902825	39	4.3	40	87	4	139	23	26	21	29	1.99
37902693--37902875	39	4.7	40	87	6	241	23	27	21	26	1.99
37906513--37906632	56	2.2	57	86	4	165	25	30	23	20	1.98
37908966--37909008	16	2.7	16	85	0	50	55	18	16	9	1.67
37909220--37909309	29	3.1	28	90	4	144	30	13	26	30	1.94
37920405--37920488	29	2.9	29	82	1	107	29	14	30	25	1.95
37921168--37921220	21	2.7	18	83	16	61	58	0	3	37	1.16
37921223--37921252	15	2.0	15	93	0	51	76	6	13	3	1.11
37921278--37921303	11	2.4	11	100	0	52	80	0	19	0	0.71
37921919--37921955	3	12.3	3	100	0	74	32	0	0	67	0.91
37925144--37925176	3	11.0	3	100	0	66	33	0	0	66	0.92
37926475--37926646	45	3.8	45	77	12	181	23	20	26	29	1.99
37928293--37928318	8	3.2	8	100	0	52	11	23	53	11	1.69
37933605--37933669	21	3.0	21	76	17	71	52	3	3	41	1.32
37934378--37934422	3	15.0	3	100	0	90	33	0	0	66	0.92
37935309--37935360	24	2.2	24	100	0	104	40	7	19	32	1.80
37936493--37936547	27	2.1	27	89	3	85	47	23	14	14	1.81
37940148--37940251	43	2.4	43	85	4	131	33	26	14	25	1.94
37942795--37942852	26	2.2	26	93	0	98	34	5	24	36	1.78
37944641--37944922	137	2.1	136	95	2	512	24	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37948489--37948558	27	2.5	28	86	2	97	27	14	25	32	1.94
37968416--37968583	40	4.2	40	79	6	187	25	20	27	26	1.99
37980433--37980622	94	2.0	94	95	0	344	37	21	18	22	1.94
37982642--37982781	46	3.0	46	87	0	199	33	17	25	24	1.96
37983272--37983452	97	1.9	97	86	4	258	35	16	20	27	1.94
37983373--37983666	90	3.3	89	73	9	263	33	18	19	27	1.96
37983366--37983625	45	5.8	45	77	8	224	33	18	20	27	1.96
37983645--37983684	21	1.9	21	94	0	71	22	22	22	32	1.98
37983666--37983822	45	3.6	45	83	4	178	29	18	24	27	1.98
37983666--37983913	44	5.6	45	75	8	204	31	20	22	25	1.98
37983832--37983919	46	1.9	46	85	0	122	36	21	17	25	1.94
37984006--37984141	44	3.1	44	78	0	137	34	16	19	29	1.94
37986999--37987024	5	5.2	5	100	0	52	80	0	0	19	0.71
37989746--37989973	112	2.0	114	92	2	379	45	4	9	40	1.57
37996968--37997009	18	2.3	18	80	8	50	47	16	4	30	1.67
37997029--37997081	6	8.5	6	83	8	70	16	0	5	77	0.96
37997706--37997744	7	6.0	6	85	14	51	76	0	2	20	0.90
37997858--37997933	24	3.0	24	77	12	66	38	0	9	52	1.33
37999000--37999075	37	2.1	37	100	0	152	47	15	13	23	1.81
37999593--37999744	67	2.3	65	85	6	193	22	31	15	30	1.94
38015038--38015090	26	2.0	26	85	7	72	26	3	3	66	1.26
38017939--38017976	19	2.0	19	100	0	76	47	21	5	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38017945--38017986	19	2.2	19	86	0	57	50	23	4	21	1.68
38024033--38024169	24	5.7	24	82	0	148	34	29	13	23	1.92
38024033--38024169	72	1.9	72	86	0	193	34	29	13	23	1.92
38025604--38025770	24	7.0	24	92	3	257	26	22	23	28	1.99
38025604--38025770	71	2.3	72	90	4	257	26	22	23	28	1.99
38025820--38025880	20	3.0	20	92	0	104	32	21	11	34	1.89
38033454--38033525	35	2.0	36	89	10	112	25	23	12	38	1.90
38033454--38033542	31	2.6	34	86	13	114	23	24	15	35	1.94
38033755--38033822	24	3.0	23	91	6	111	30	22	22	25	1.99
38033828--38033888	24	2.6	24	97	2	115	24	21	22	31	1.98
38033939--38033992	11	5.4	11	70	20	55	31	20	11	37	1.88
38033939--38033997	19	3.0	20	95	5	111	33	20	10	35	1.86
38034040--38034087	25	1.9	25	86	0	69	25	16	25	33	1.96
38037506--38037575	27	2.5	28	88	2	106	28	14	25	31	1.95
38037506--38037587	27	3.0	27	80	8	103	29	13	23	34	1.93
38045581--38045649	26	2.5	28	86	4	97	27	14	26	31	1.95
38049937--38050104	80	2.1	80	80	6	189	25	23	27	24	2.00
38052384--38052467	26	3.2	26	96	0	150	33	4	25	36	1.77
38054257--38054526	137	2.0	136	97	0	504	25	17	24	32	1.97
38055610--38055668	23	2.6	23	86	2	84	23	13	13	49	1.78
38056749--38056790	17	2.4	18	76	11	52	47	0	2	50	1.14
38059376--38059404	14	2.1	14	100	0	58	27	0	6	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38060325--38060426	48	2.1	49	87	5	145	42	7	16	33	1.77
38064820--38064982	39	4.2	39	91	0	263	23	33	20	22	1.97
38072485--38072646	39	4.2	39	91	2	263	24	32	20	22	1.98
38072493--38072648	77	2.0	78	93	1	269	22	32	20	25	1.98
38080771--38080872	28	3.5	29	81	6	109	28	27	14	29	1.95
38083333--38083391	28	2.2	26	77	11	64	30	27	5	37	1.78
38083339--38083417	28	2.8	28	82	0	104	31	25	6	36	1.81
38086844--38086911	30	2.3	29	94	2	118	23	17	23	35	1.95
38094208--38094275	30	2.3	29	92	2	109	25	16	23	35	1.95
38094283--38094383	44	2.3	44	96	0	184	25	16	25	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292