genome.fa.s9.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  180  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53673807--53674021	91	2.4	91	82	6	267	32	25	13	28	1.94
53677009--53677142	27	5.0	26	84	5	126	42	20	15	21	1.89
53677291--53677359	36	1.9	36	100	0	138	26	28	27	17	1.97
53684884--53684917	16	2.2	16	89	5	52	55	20	2	20	1.56
53687566--53687699	26	5.2	26	93	3	216	34	7	22	35	1.82
53694309--53694411	26	4.2	26	81	12	144	33	7	23	35	1.83
53694322--53694411	47	1.9	47	95	0	162	33	8	22	35	1.85
53694348--53694390	21	2.0	21	95	0	77	34	9	23	32	1.87
53695895--53695943	25	2.0	25	84	8	64	38	20	16	24	1.92
53702945--53702976	3	10.7	3	100	0	64	65	0	0	34	0.93
53702961--53703009	25	1.9	26	83	4	64	51	4	0	44	1.20
53704960--53705088	46	2.8	46	85	2	170	30	25	20	23	1.99
53713795--53713904	26	4.2	26	97	0	184	33	5	24	36	1.79
53718243--53718298	23	2.6	22	83	10	64	35	8	16	39	1.80
53719694--53719719	12	2.2	12	100	0	52	38	0	15	46	1.46
53723932--53723977	20	2.2	21	92	3	76	82	0	17	0	0.67
53724927--53725158	43	5.5	43	67	21	177	29	21	21	26	1.99
53724978--53725281	41	7.3	41	65	20	150	29	24	23	23	1.99
53724928--53725453	84	6.3	84	88	4	778	30	22	22	24	1.99
53724928--53725450	250	2.1	248	88	4	764	30	22	21	24	1.99
53725595--53725916	134	2.4	133	86	2	439	32	18	22	25	1.97
53725595--53725872	44	6.2	44	69	9	188	31	17	23	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53725729--53726140	220	1.9	219	81	5	497	32	19	21	26	1.97
53725882--53726049	89	1.9	87	82	9	207	32	19	22	26	1.97
53726082--53726507	78	5.5	78	89	3	610	32	17	23	25	1.97
53726082--53726507	156	2.7	156	91	1	694	32	17	23	25	1.97
53726472--53726639	89	1.9	89	91	0	273	29	14	29	26	1.95
53726472--53726640	45	3.8	45	88	1	241	28	15	29	26	1.96
53727000--53727091	19	4.9	19	90	5	152	36	11	15	35	1.84
53727000--53727091	36	2.5	36	92	3	148	36	11	15	35	1.84
53727040--53727077	17	2.5	15	80	19	51	39	10	15	34	1.82
53728941--53728977	5	7.4	5	100	0	74	40	18	0	40	1.51
53731720--53731783	32	2.0	32	100	0	128	34	9	9	46	1.68
53734654--53734740	37	2.3	36	94	5	147	26	33	19	20	1.97
53734809--53735445	49	12.4	49	74	16	380	29	29	8	31	1.88
53734789--53735432	98	6.2	98	78	13	556	29	30	9	31	1.88
53734914--53735167	129	2.0	129	96	0	463	27	31	10	30	1.90
53734963--53735118	80	2.0	80	100	0	312	26	32	10	30	1.90
53735048--53735445	147	2.7	147	93	0	661	29	29	9	32	1.88
53735325--53735407	27	3.3	27	65	22	79	34	27	3	33	1.75
53735048--53735443	98	4.0	98	94	0	630	29	29	9	32	1.88
53739287--53739469	79	2.3	79	91	1	296	25	28	22	24	1.99
53739319--53739494	79	2.2	79	87	5	257	28	27	21	22	1.99
53739287--53739469	40	4.6	40	93	2	298	25	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53739478--53739590	40	2.8	40	81	6	122	26	27	20	25	1.99
53739289--53739583	119	2.5	118	79	8	289	27	28	20	23	1.99
53741448--53741534	37	2.3	36	94	5	147	26	33	19	20	1.97
53741603--53742237	49	12.4	49	74	16	371	29	29	8	31	1.88
53741583--53742224	98	6.2	98	77	13	547	29	30	9	31	1.88
53741708--53741961	129	2.0	129	96	0	463	27	31	10	30	1.90
53741757--53741912	80	2.0	80	100	0	312	26	32	10	30	1.90
53741648--53742201	178	3.0	183	83	9	708	29	30	9	31	1.88
53741607--53742235	227	2.7	238	89	4	938	29	30	9	31	1.88
53742117--53742199	27	3.3	27	65	22	79	34	27	3	33	1.75
53741842--53742237	145	2.7	145	92	1	630	29	29	9	32	1.88
53741842--53742235	98	4.0	98	93	1	621	29	29	9	32	1.88
53745166--53745215	21	2.4	21	89	0	73	32	34	8	26	1.85
53746855--53746918	21	3.0	22	70	9	60	37	23	18	20	1.94
53747401--53747435	18	2.0	18	88	5	54	25	25	0	48	1.51
53748155--53748257	3	34.3	3	80	7	120	61	0	0	37	1.03
53748155--53748257	18	5.9	18	86	8	133	61	0	0	37	1.03
53754134--53754241	26	4.2	26	93	0	189	32	7	24	36	1.83
53761873--53761977	29	3.6	29	80	2	95	25	32	17	24	1.97
53761932--53762002	29	2.4	29	100	0	142	26	28	15	29	1.96
53769641--53769745	29	3.6	29	80	2	95	25	32	17	24	1.97
53769700--53769770	29	2.4	29	100	0	142	26	28	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53772414--53772521	26	4.2	26	90	0	171	31	8	25	35	1.85
53774306--53774592	137	2.1	137	97	1	540	24	19	25	31	1.98
53775987--53776033	22	2.1	22	92	0	76	6	34	21	38	1.79
53777934--53777959	13	2.0	13	100	0	52	38	7	15	38	1.76
53784346--53784449	27	3.9	27	76	8	104	35	19	26	18	1.95
53784345--53784482	27	5.1	27	75	3	89	39	21	24	15	1.91
53788402--53788461	30	2.0	30	83	0	75	38	5	25	31	1.77
53795942--53795998	30	1.9	30	85	0	78	38	7	24	29	1.82
53803116--53803202	43	2.0	43	90	0	138	29	26	18	25	1.98
53805336--53805415	39	2.1	39	97	0	151	17	17	22	42	1.89
53815566--53815596	15	2.0	16	93	6	55	51	3	0	45	1.17
53817015--53817062	24	2.1	24	81	11	57	60	8	0	31	1.26
53817246--53817312	21	3.0	23	72	21	63	64	1	5	28	1.26
53817279--53817324	15	2.9	15	90	6	65	67	0	6	26	1.15
53820275--53820313	19	2.0	20	85	5	53	35	0	5	58	1.20
53822524--53822631	26	4.2	26	92	0	180	32	6	24	37	1.81
53823710--53823782	36	2.0	36	100	0	146	21	10	27	39	1.87
53830661--53830814	81	1.9	81	91	2	256	28	44	1	25	1.62
53834734--53834771	19	2.0	19	100	0	76	42	5	21	31	1.75
53835740--53835783	21	2.0	22	86	4	63	34	13	2	50	1.55
53837961--53837993	17	1.9	17	93	0	57	27	21	3	48	1.64
53838093--53838128	13	2.8	14	84	16	51	27	25	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53838080--53838120	18	2.2	19	87	12	59	29	24	0	46	1.53
53838282--53838346	23	2.9	23	79	6	89	40	24	20	15	1.91
53838724--53838761	15	2.5	15	95	0	67	50	10	0	39	1.37
53839509--53839537	15	1.9	15	100	0	58	6	20	6	65	1.40
53842430--53842546	55	2.1	54	83	10	148	27	34	18	19	1.96
53842451--53842582	55	2.4	55	89	3	196	28	30	19	21	1.98
53843178--53843233	29	1.9	29	88	0	85	25	26	16	32	1.96
53844263--53844324	31	2.1	29	85	11	81	37	12	25	24	1.91
53849291--53849388	25	3.8	25	88	6	133	28	21	22	27	1.99
53849816--53849855	21	2.0	20	90	5	62	20	40	20	20	1.92
53853324--53853515	58	3.3	58	82	0	231	35	9	20	33	1.86
53853534--53853773	69	3.5	68	73	8	209	21	20	23	34	1.96
53853595--53854392	69	11.7	69	72	6	415	22	20	22	33	1.97
53853595--53854352	138	5.6	138	73	5	464	23	20	22	34	1.97
53854155--53854306	68	2.2	69	85	3	209	24	23	23	28	1.99
53858547--53858733	71	2.7	68	93	5	281	18	28	18	34	1.95
53858570--53858733	71	2.3	71	100	0	328	18	28	17	35	1.94
53858570--53858767	71	2.8	70	92	3	276	20	28	17	33	1.95
53862160--53862273	48	2.4	49	80	5	117	32	23	16	27	1.96
53869954--53869995	21	2.0	21	95	0	75	33	26	9	30	1.88
53870352--53870388	2	20.0	2	84	15	53	45	0	0	54	1.00
53871153--53871244	37	2.5	38	81	11	111	43	1	22	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53873525--53873600	40	1.9	40	83	0	98	15	14	32	36	1.88
53884302--53884340	19	2.1	19	85	9	53	41	0	2	56	1.13
53884301--53884333	17	1.9	17	88	11	50	36	0	3	60	1.12
53895041--53895099	32	1.9	30	86	6	82	45	3	3	47	1.36
53895041--53895106	32	2.2	30	83	8	80	46	3	3	46	1.33
53895079--53895136	22	2.8	22	77	15	70	48	3	0	48	1.18
53895974--53896004	16	1.9	16	100	0	62	41	0	12	45	1.42
53896087--53896123	2	18.5	2	100	0	74	51	0	0	48	1.00
53902945--53902984	16	2.6	16	81	18	57	37	0	0	62	0.95
53903246--53903286	18	2.2	19	86	4	57	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292