genome.fa.s9.2.7.7.80.10.50.1000.259.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  259  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74566660--74566689	8	3.6	8	95	4	51	0	3	20	76	0.92
74566702--74566737	6	6.0	6	93	0	63	2	33	13	50	1.57
74567572--74567613	22	1.9	22	85	9	59	23	52	9	14	1.71
74567720--74567768	25	2.0	25	88	8	73	20	2	24	53	1.56
74568068--74568153	3	28.3	3	72	17	63	30	4	1	63	1.21
74568067--74568153	27	3.4	27	70	13	76	29	4	1	64	1.21
74568376--74568418	12	3.5	12	83	3	50	37	0	4	58	1.19
74568512--74568545	2	17.0	2	87	0	50	47	2	0	50	1.16
74569512--74569546	6	5.8	6	100	0	70	31	51	0	17	1.45
74571118--74571158	18	2.2	19	95	4	75	60	0	4	34	1.18
74571589--74571721	66	2.0	66	95	0	239	45	12	11	31	1.77
74572931--74573095	39	4.1	40	67	21	96	60	6	4	29	1.40
74573078--74573120	12	3.5	12	83	3	50	58	4	0	37	1.19
74573341--74573426	3	28.3	3	73	19	65	65	1	3	30	1.17
74573341--74573423	12	6.8	12	76	16	73	65	1	3	30	1.17
74573346--74573426	18	4.4	18	79	13	76	65	1	3	29	1.17
74573341--74573427	27	3.4	27	71	19	78	65	1	3	29	1.16
74573725--74573774	25	2.0	25	88	4	73	52	26	2	20	1.57
74573753--74573802	21	2.3	22	89	3	75	64	28	0	8	1.22
74573753--74573847	22	4.4	21	75	16	70	58	27	2	11	1.44
74573796--74573838	20	2.1	20	95	4	77	51	27	4	16	1.64
74573773--74573847	22	3.5	22	82	10	91	56	28	2	13	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74573795--74573847	20	2.5	21	81	12	72	52	28	3	15	1.59
74573921--74573977	21	2.7	21	91	2	96	17	10	50	21	1.75
74573979--74574005	4	6.8	4	100	0	54	22	0	0	77	0.76
74574345--74575073	44	16.6	44	77	7	617	25	23	19	31	1.98
74574388--74575073	264	2.6	264	89	2	970	25	23	19	31	1.98
74574388--74574985	132	4.5	132	95	1	1031	25	23	19	31	1.98
74575185--74575383	68	2.9	68	87	2	285	26	21	23	29	1.99
74575577--74575863	87	3.3	87	95	0	513	19	20	23	37	1.94
74575401--74576048	216	3.0	215	80	5	689	20	20	21	36	1.95
74575401--74576037	43	14.7	43	71	9	323	20	21	21	36	1.95
74575577--74575899	87	3.7	88	90	3	451	18	21	22	37	1.94
74575706--74575996	129	2.2	130	85	6	376	19	22	21	36	1.95
74576101--74576227	66	1.9	66	93	0	218	36	12	18	32	1.89
74580220--74580266	19	2.5	20	89	6	71	42	8	21	27	1.81
74582740--74582839	39	2.6	35	77	14	92	65	4	3	28	1.26
74582806--74582857	18	2.8	18	82	8	61	63	5	0	30	1.18
74583081--74583166	3	28.3	3	73	19	65	65	1	3	30	1.17
74583081--74583163	12	6.8	12	76	16	73	65	1	3	30	1.17
74583086--74583166	18	4.4	18	79	13	76	65	1	3	29	1.17
74583081--74583167	27	3.4	27	71	19	78	65	1	3	29	1.16
74583497--74583542	22	2.1	22	87	0	65	67	26	0	6	1.15
74583494--74583535	19	2.2	20	91	4	68	64	28	0	7	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74583650--74583706	21	2.7	21	91	2	96	17	10	50	21	1.75
74585823--74585877	21	2.8	21	71	18	55	49	7	3	40	1.48
74597457--74597507	25	2.0	25	100	0	102	49	3	23	23	1.67
74598292--74598333	20	2.1	20	86	0	57	47	0	7	45	1.30
74600564--74600622	8	7.4	8	77	21	61	35	3	1	59	1.24
74600572--74600624	5	10.6	5	80	15	65	37	3	0	58	1.16
74600563--74600624	13	4.7	13	75	18	65	37	3	1	58	1.24
74606925--74607006	26	3.2	26	94	0	137	37	24	6	31	1.80
74612693--74612773	26	3.2	26	96	1	146	35	24	7	32	1.83
74615657--74615699	15	2.9	15	82	3	52	44	4	11	39	1.62
74620639--74620788	75	2.0	75	94	0	264	38	9	8	44	1.66
74620838--74620896	25	2.5	23	79	12	66	66	5	1	27	1.22
74621266--74621290	13	1.9	13	100	0	50	32	0	4	64	1.12
74628977--74629003	10	2.7	10	100	0	54	81	0	0	18	0.69
74632262--74632352	45	2.0	45	100	0	182	34	10	17	37	1.85
74633498--74633527	15	2.0	15	93	0	51	50	0	10	40	1.36
74640207--74640283	34	2.3	34	88	4	111	32	12	15	38	1.86
74641523--74641556	16	2.1	16	88	0	50	35	8	2	52	1.47
74650505--74650728	112	2.0	112	97	0	421	22	20	14	41	1.89
74652645--74652701	26	2.2	26	96	0	105	38	7	17	36	1.77
74668651--74668735	16	5.5	17	72	23	80	61	0	2	36	1.09
74668652--74668735	43	2.0	43	97	0	159	61	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74670272--74670304	17	2.0	17	88	5	50	39	3	0	57	1.14
74670831--74670866	17	2.1	17	90	10	56	38	0	0	61	0.96
74671276--74671308	17	1.9	17	100	0	66	54	0	0	45	0.99
74678891--74678931	18	2.3	18	80	20	50	43	7	2	46	1.44
74681787--74681826	19	2.0	19	85	9	53	62	5	0	32	1.17
74689718--74689827	26	4.2	26	89	4	159	37	22	5	34	1.78
74689718--74689827	52	2.1	52	91	0	175	37	22	5	34	1.78
74690439--74690520	19	4.3	19	73	18	73	36	1	3	58	1.24
74693390--74693458	29	2.3	31	80	9	81	59	4	1	34	1.26
74694301--74694364	30	2.1	30	85	0	83	32	21	14	31	1.93
74697446--74697614	46	3.7	46	88	1	241	41	12	24	21	1.88
74700173--74700244	37	1.9	37	81	10	85	43	18	0	38	1.50
74700593--74700651	21	2.8	22	85	7	70	23	0	6	69	1.12
74700622--74700681	26	2.4	24	83	8	75	28	0	3	68	1.05
74701152--74701187	18	2.1	18	89	5	56	33	25	0	41	1.55
74701627--74701670	17	2.4	18	88	7	63	13	9	4	72	1.24
74701640--74701683	23	1.9	23	81	9	54	20	6	4	68	1.31
74701850--74701894	19	2.3	20	88	3	65	57	2	0	40	1.11
74701843--74701893	27	2.0	24	85	11	66	58	1	0	39	1.09
74704889--74704931	22	2.0	22	86	9	61	72	2	2	23	1.08
74705505--74705559	22	2.5	22	80	11	60	32	3	1	61	1.24
74705484--74705651	3	56.7	3	66	19	68	33	2	2	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74705518--74705577	22	2.8	22	80	12	54	33	1	3	61	1.22
74705567--74705665	29	3.3	29	75	13	85	32	4	3	60	1.30
74705562--74705674	57	2.0	57	81	13	137	34	3	3	58	1.32
74705926--74705977	23	2.3	22	77	9	59	30	1	5	61	1.30
74705937--74706008	29	2.4	30	81	9	76	30	2	4	62	1.28
74705963--74706013	27	1.9	26	84	11	68	31	3	1	62	1.24
74705591--74706267	343	2.0	344	99	0	1331	35	6	5	52	1.50
74706241--74706282	20	2.2	19	87	8	59	35	4	9	50	1.56
74706345--74706399	27	2.0	29	86	13	80	30	7	3	58	1.43
74706435--74706490	14	4.1	14	73	13	53	35	8	1	53	1.43
74706445--74706511	27	2.5	27	85	4	91	34	5	4	55	1.45
74706544--74706690	22	6.8	20	68	19	64	33	3	6	57	1.40
74706645--74706687	21	2.1	20	95	4	77	34	6	4	53	1.49
74707157--74707265	26	4.2	26	92	2	184	33	5	24	36	1.79
74707157--74707265	51	2.1	52	98	1	211	33	5	24	36	1.79
74708750--74708801	25	2.0	26	85	3	70	38	23	13	25	1.91
74714155--74714312	26	6.2	26	92	4	261	32	5	25	36	1.78
74715794--74715845	25	2.0	26	85	3	70	38	23	13	25	1.91
74719132--74719185	23	2.4	23	82	14	69	59	0	1	38	1.08
74719915--74719986	29	2.6	28	78	10	76	50	0	1	48	1.09
74720581--74720607	6	4.5	6	100	0	54	18	51	14	14	1.76
74722555--74722603	26	1.9	25	83	4	62	28	0	8	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74722827--74722869	15	2.7	16	82	7	52	48	4	0	46	1.22
74726995--74727019	13	1.9	13	100	0	50	40	0	0	60	0.97
74727903--74727949	15	3.2	15	71	17	53	21	6	6	65	1.38
74740738--74740792	24	2.3	23	78	9	65	50	3	1	43	1.30
74742107--74742343	91	2.7	86	84	7	323	40	17	7	34	1.78
74742724--74742786	27	2.2	28	86	10	85	36	1	1	60	1.16
74742909--74743072	88	1.8	89	80	7	197	37	9	18	34	1.84
74745810--74745863	27	2.0	28	89	7	85	50	0	0	50	1.00
74755033--74755117	42	2.0	42	97	0	161	24	17	9	48	1.77
74761271--74761303	16	2.1	16	100	0	66	48	18	15	18	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292