genome.fa.s9.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  156  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46464792--46464841	25	2.0	25	100	0	100	32	8	4	56	1.47
46464796--46464852	25	2.3	25	87	0	78	36	5	7	50	1.52
46469208--46469243	7	5.1	7	96	0	63	44	2	38	13	1.59
46472634--46472676	3	14.3	3	100	0	86	34	0	0	65	0.93
46474957--46475017	15	4.1	15	84	0	77	31	14	0	54	1.41
46488835--46488879	4	10.5	4	81	13	54	71	0	4	24	1.05
46488834--46488893	17	3.5	16	74	17	50	65	0	5	30	1.14
46489255--46489328	37	2.0	37	100	0	148	45	16	16	21	1.84
46490778--46491118	44	7.6	44	74	9	260	29	19	18	32	1.96
46498580--46498628	4	11.5	4	80	20	55	73	0	6	20	1.04
46498580--46498635	27	2.1	27	80	12	62	75	1	5	17	1.09
46499898--46499931	2	17.0	2	100	0	68	50	0	0	50	1.00
46501044--46501079	2	18.0	2	100	0	72	50	0	0	50	1.00
46502102--46502142	2	21.0	2	95	5	75	51	0	0	48	1.00
46502365--46502474	20	5.7	19	69	20	68	34	2	4	58	1.33
46502334--46502486	77	1.9	79	90	7	249	33	3	5	56	1.39
46504639--46504678	2	20.5	2	94	5	73	47	0	0	52	1.00
46507831--46507880	2	25.5	2	91	4	84	50	0	2	48	1.12
46508975--46509015	17	2.4	17	87	0	55	2	9	14	73	1.19
46509612--46509758	45	3.3	45	77	12	142	29	22	16	31	1.96
46509590--46509836	89	2.8	89	78	5	268	29	22	16	31	1.96
46509595--46509836	44	5.5	44	76	2	216	28	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46520843--46520904	20	3.2	20	73	11	65	32	24	1	41	1.64
46531574--46531625	20	2.5	20	81	3	68	51	11	11	25	1.71
46532406--46532456	19	2.7	18	79	11	57	37	1	5	54	1.36
46534095--46534221	59	2.1	60	82	4	150	45	14	3	36	1.63
46534535--46534655	61	2.0	61	85	0	161	39	6	14	39	1.72
46536299--46536343	22	2.0	22	87	8	65	28	2	4	64	1.25
46544083--46544116	17	2.1	17	88	5	52	58	0	0	41	0.98
46544566--46544594	5	5.8	5	100	0	58	41	0	17	41	1.49
46545616--46545673	24	2.3	26	77	11	68	53	3	3	39	1.35
46550568--46550592	13	1.9	13	100	0	50	24	8	16	52	1.70
46557426--46558092	221	3.0	221	93	0	1100	26	15	28	29	1.96
46561307--46561339	17	2.0	17	94	5	59	36	15	0	48	1.45
46561620--46561759	46	3.0	47	87	2	169	24	22	12	40	1.89
46563684--46563760	37	2.1	38	97	2	147	2	31	6	59	1.36
46563953--46564001	21	2.5	18	73	20	53	48	4	0	46	1.20
46565581--46565636	26	2.1	26	83	3	67	26	3	5	64	1.32
46580557--46580588	6	5.3	6	100	0	64	31	0	68	0	0.90
46580940--46580984	23	2.0	23	82	8	56	53	0	2	44	1.13
46584361--46584511	43	3.5	42	77	8	137	29	24	19	26	1.99
46588245--46588552	46	6.5	48	73	11	176	24	28	20	27	1.99
46588292--46588460	93	1.8	92	84	6	234	26	28	19	25	1.99
46590428--46590630	75	2.7	75	82	1	237	37	20	18	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46590499--46590630	40	3.4	39	71	14	121	38	19	18	22	1.93
46592134--46592314	48	3.8	48	84	0	209	27	20	23	27	1.99
46592129--46592314	96	1.9	96	85	0	255	27	20	23	27	1.99
46594716--46594777	2	31.0	2	100	0	124	50	0	0	50	1.00
46594898--46594986	32	2.8	32	75	13	83	29	6	24	39	1.81
46595141--46595205	26	2.4	27	82	7	80	29	12	24	33	1.92
46603594--46603618	12	2.1	12	100	0	50	52	16	0	32	1.44
46604352--46604383	7	4.6	7	96	0	55	46	15	21	15	1.83
46604830--46605007	88	2.0	88	86	2	250	26	13	14	44	1.82
46607997--46608203	40	5.2	40	81	1	218	26	22	26	24	2.00
46608001--46608207	79	2.6	79	82	1	245	26	22	26	24	2.00
46615994--46616200	40	5.2	40	81	3	220	26	22	27	24	2.00
46615994--46616181	79	2.4	80	83	2	227	26	22	27	23	2.00
46619157--46619364	40	5.2	40	82	2	229	25	23	26	24	2.00
46627180--46627386	40	5.2	40	82	2	220	26	23	26	24	2.00
46629640--46629664	5	5.0	5	100	0	50	60	0	0	40	0.97
46633042--46633105	31	2.1	31	90	0	101	25	23	15	35	1.94
46633299--46633441	24	6.0	24	89	4	209	28	22	20	27	1.99
46633313--46633441	47	2.7	48	91	3	206	28	22	20	28	1.98
46633299--46633440	71	2.0	72	88	4	216	28	22	21	27	1.99
46633491--46633542	11	5.2	11	69	21	51	30	19	13	36	1.90
46633491--46633556	20	3.3	20	87	4	98	31	19	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46633593--46633640	25	1.9	25	86	0	69	25	16	25	33	1.96
46640065--46640113	21	2.3	22	82	7	64	42	6	6	44	1.54
46640108--46640148	22	1.9	22	90	5	66	26	14	7	51	1.69
46640259--46640291	17	1.9	17	93	0	57	42	12	3	42	1.57
46647456--46647494	18	2.1	18	85	4	51	48	0	2	48	1.15
46659185--46659251	3	22.3	3	100	0	134	67	0	0	32	0.91
46660258--46660295	19	2.1	18	85	9	51	10	5	10	73	1.23
46660862--46661116	138	1.8	138	87	1	377	26	20	17	34	1.95
46661343--46662188	44	18.6	43	63	21	124	28	19	17	34	1.95
46660955--46661601	94	6.9	94	78	5	590	27	21	17	32	1.96
46661635--46662143	138	3.7	135	79	7	519	30	19	16	33	1.94
46668194--46668365	93	1.8	93	96	0	317	27	29	21	20	1.98
46668187--46668362	46	3.8	46	79	12	216	28	29	21	20	1.98
46678599--46678637	20	2.0	20	85	10	53	56	0	2	41	1.13
46678688--46678747	26	2.3	27	82	5	70	40	3	1	55	1.27
46682672--46682789	44	2.6	44	85	6	148	20	16	31	32	1.94
46686635--46686689	26	2.1	26	89	0	83	38	7	27	27	1.83
46688599--46688737	42	3.3	42	76	6	111	33	17	22	27	1.96
46688979--46689021	21	2.0	21	95	0	77	39	6	23	30	1.81
46691279--46691318	17	2.3	18	86	4	55	20	25	40	15	1.90
46694083--46694113	2	15.5	2	100	0	62	48	0	0	51	1.00
46694269--46694344	25	3.1	24	79	11	66	57	5	0	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46694276--46694337	31	2.0	30	84	9	81	58	4	0	37	1.20
46694292--46694344	17	2.9	19	80	11	58	56	1	0	41	1.10
46695105--46695157	27	1.9	28	84	3	72	52	0	47	0	1.00
46695109--46695153	22	2.0	23	91	4	74	51	0	48	0	1.00
46695250--46695285	16	2.2	17	90	5	56	19	0	0	80	0.71
46696545--46696569	13	1.9	13	100	0	50	64	4	16	16	1.44
46696501--46696757	67	3.8	66	84	7	297	40	15	15	28	1.88
46696703--46697243	71	7.5	71	82	6	624	29	20	17	31	1.96
46696707--46697334	144	4.2	145	91	4	920	30	20	17	31	1.96
46707900--46707924	2	12.5	2	100	0	50	48	0	0	52	1.00
46708079--46708129	24	2.2	22	83	13	59	58	7	0	33	1.27
46708101--46708153	17	2.9	19	80	11	58	56	1	0	41	1.10
46710940--46711040	28	3.5	28	86	6	114	29	13	26	29	1.94
46712722--46712801	15	5.4	15	77	7	83	10	18	13	57	1.64
46712713--46712800	30	3.0	30	80	11	92	10	18	15	55	1.68
46715171--46715351	46	3.9	46	81	9	233	20	21	29	27	1.98
46715173--46715343	93	1.8	93	96	0	315	20	22	29	27	1.98
46716865--46716923	27	2.1	29	78	15	70	54	0	45	0	0.99
46717031--46717066	16	2.2	17	90	5	56	19	0	0	80	0.71
46733892--46734010	60	2.0	60	82	9	145	41	15	4	39	1.66
46734219--46734289	21	3.2	21	67	21	63	42	7	9	40	1.65
46736111--46736196	27	3.2	27	88	8	115	34	24	23	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46737563--46737595	16	2.1	16	100	0	66	45	12	12	30	1.78
46737939--46737976	2	19.5	2	94	5	69	52	0	0	47	1.00
46738906--46738935	11	2.6	11	94	5	51	80	3	6	10	1.01
46739580--46739759	44	4.1	44	86	4	218	23	28	16	31	1.96
46739584--46739759	89	2.0	88	85	1	235	23	28	16	30	1.96
46739721--46739910	88	2.2	86	90	4	292	26	27	17	27	1.98
46739927--46741779	138	13.4	139	87	7	1499	29	21	16	31	1.96
46740138--46741774	276	6.0	274	89	3	2087	29	22	16	31	1.96
46739948--46741774	414	4.4	413	88	4	2051	29	21	16	31	1.96
46745702--46745768	19	3.5	19	91	0	107	41	16	19	22	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292