genome.fa.s9.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  140  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41663422--41663474	27	1.9	27	84	3	70	41	13	11	33	1.80
41663431--41663529	27	3.7	27	83	5	103	40	18	11	30	1.85
41663431--41663536	54	2.0	53	81	9	126	38	18	11	31	1.86
41663515--41663575	27	2.3	27	85	2	79	36	27	6	29	1.82
41663526--41663719	27	6.8	27	75	12	138	28	24	7	39	1.83
41663549--41663630	38	2.2	38	88	0	119	24	31	6	37	1.80
41663587--41663721	27	5.0	27	83	3	164	29	20	8	42	1.80
41663671--41663919	27	9.1	27	78	6	162	38	20	8	32	1.82
41663698--41663865	81	2.1	81	82	4	196	39	22	8	30	1.83
41663671--41663919	54	4.6	53	76	9	180	38	20	8	32	1.82
41663876--41663927	27	1.9	27	88	7	79	40	11	11	36	1.78
41663979--41664046	27	2.5	27	88	4	93	33	20	25	20	1.97
41665090--41665137	25	1.9	25	86	0	69	33	25	16	25	1.96
41665185--41665240	11	5.5	11	71	16	57	35	12	19	32	1.89
41665174--41665240	20	3.3	20	93	0	116	34	11	20	32	1.90
41665290--41665441	24	6.4	23	88	4	214	30	21	21	26	1.99
41665290--41665441	47	3.2	47	88	3	216	30	21	21	26	1.99
41665290--41665441	71	2.1	71	92	1	250	30	21	21	26	1.99
41665649--41665712	31	2.1	31	90	0	101	39	15	23	21	1.92
41668481--41668533	27	1.9	27	84	3	70	41	13	11	33	1.80
41668490--41668588	27	3.7	27	83	5	103	40	18	11	30	1.85
41668490--41668596	54	2.0	54	81	7	128	38	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41668574--41668635	27	2.3	27	88	0	88	35	29	6	29	1.82
41668585--41668778	27	6.8	27	74	15	113	27	24	8	38	1.85
41668609--41668690	38	2.2	38	88	0	119	23	30	7	39	1.82
41668647--41668780	27	5.0	27	82	5	155	28	20	9	41	1.84
41668647--41668779	53	2.5	54	82	3	171	27	21	9	41	1.84
41668730--41668969	27	8.8	27	78	6	162	38	20	8	32	1.82
41668730--41668969	54	4.4	55	78	5	184	38	20	8	32	1.82
41668772--41668926	81	1.9	81	85	5	215	40	20	9	30	1.83
41668935--41668986	27	1.9	27	84	7	70	40	9	11	38	1.74
41669038--41669105	27	2.5	27	88	4	93	35	17	25	22	1.95
41670146--41670193	25	1.9	25	86	0	69	33	25	16	25	1.96
41670236--41670288	9	5.4	9	75	16	52	33	7	20	37	1.81
41670240--41670296	11	5.5	11	74	16	59	35	10	19	35	1.86
41670230--41670296	20	3.3	20	89	0	107	34	10	20	34	1.87
41670346--41670513	24	7.0	23	88	5	228	28	22	21	27	1.99
41670346--41670513	47	3.5	47	87	4	230	28	22	21	27	1.99
41670346--41670512	71	2.3	71	90	2	262	28	22	21	28	1.99
41670706--41670769	31	2.1	31	90	0	101	39	15	23	21	1.92
41675792--41676017	50	4.5	50	76	12	212	25	16	26	31	1.96
41675792--41676017	101	2.3	99	81	9	246	25	16	26	31	1.96
41677726--41677924	27	7.4	27	81	4	204	26	20	17	35	1.95
41677725--41677924	54	3.7	54	87	2	276	26	20	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41677740--41677926	81	2.3	80	86	1	248	26	20	18	34	1.96
41686492--41686549	27	2.1	27	93	0	98	32	17	18	31	1.94
41693820--41694007	40	4.7	40	89	3	281	25	27	22	24	2.00
41699082--41699141	30	2.0	31	83	3	77	43	16	25	15	1.86
41703035--41703186	40	3.8	40	93	0	250	25	23	26	25	2.00
41709485--41709726	40	6.1	40	91	2	373	23	22	28	26	1.99
41709485--41709714	118	1.9	119	91	2	374	23	22	27	26	1.99
41713975--41714048	29	2.6	29	95	0	139	27	14	31	27	1.95
41714032--41714107	29	2.6	29	78	0	89	22	19	35	22	1.96
41713975--41714107	58	2.3	58	80	2	133	24	17	33	24	1.96
41716907--41716957	26	2.0	26	92	0	84	19	17	21	41	1.91
41718251--41718283	15	2.2	16	89	10	52	24	0	21	54	1.45
41722167--41722362	40	4.9	40	87	1	277	24	27	22	25	2.00
41728041--41728083	3	14.0	3	95	4	77	34	0	0	65	0.93
41730053--41730391	40	8.4	40	90	1	491	23	26	22	27	2.00
41739416--41739621	27	7.6	27	81	0	187	40	20	8	30	1.82
41739416--41739637	81	2.7	81	85	1	266	40	19	8	31	1.81
41739620--41739863	27	9.1	26	81	6	190	30	22	7	39	1.82
41739625--41739863	54	4.4	54	84	5	279	30	21	7	40	1.82
41740323--41740399	6	12.8	6	84	5	102	19	19	15	45	1.85
41742346--41742624	27	10.3	27	82	0	234	40	19	7	32	1.79
41742346--41742606	54	4.8	54	84	4	265	40	20	6	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41742336--41742606	81	3.3	81	84	3	312	40	20	7	32	1.79
41742602--41742876	27	10.2	27	86	0	334	29	21	7	42	1.80
41742562--41742730	81	2.1	81	81	0	194	34	18	7	39	1.78
41742602--41742876	81	3.4	81	88	0	406	29	21	7	42	1.80
41743271--41743333	6	10.3	6	77	16	67	19	15	15	49	1.80
41745661--41745951	48	6.1	48	97	0	537	35	6	27	31	1.81
41746057--41746159	37	2.8	37	90	0	170	24	19	31	25	1.98
41754227--41754415	39	4.9	39	94	2	319	24	22	31	22	1.98
41754226--41754445	78	2.8	78	88	2	318	24	22	31	21	1.98
41762203--41762340	39	3.6	39	98	2	269	26	23	30	19	1.98
41762310--41762372	32	2.0	32	84	6	83	23	20	30	25	1.99
41762203--41762412	71	2.9	72	84	7	212	24	22	30	22	1.99
41770796--41770848	25	2.1	25	92	0	88	28	20	16	33	1.95
41775544--41775588	15	3.0	15	100	0	90	40	26	20	13	1.89
41776060--41776168	57	1.9	57	88	3	166	29	31	12	26	1.93
41776053--41776168	28	4.1	29	84	5	148	30	29	12	27	1.93
41776065--41776166	29	3.6	28	84	5	134	29	29	13	27	1.94
41783111--41783373	27	9.7	27	84	3	305	28	23	7	39	1.83
41783111--41783373	81	3.2	81	84	5	352	28	23	7	39	1.83
41783366--41783437	27	2.7	27	77	0	81	40	20	8	30	1.82
41783244--41783417	81	2.1	81	80	2	188	29	21	9	39	1.84
41784745--41784958	24	9.0	24	89	4	310	28	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41784746--41784958	47	4.5	47	91	3	313	28	22	22	27	1.99
41784745--41784958	71	3.0	71	93	3	342	28	22	21	27	1.99
41787350--41787477	55	2.3	55	77	5	132	31	23	26	18	1.98
41787888--41788108	122	1.8	121	83	3	293	30	19	9	41	1.82
41793196--41793255	30	2.0	30	87	6	86	36	8	26	28	1.85
41793899--41794131	49	4.7	50	86	2	299	25	17	27	29	1.97
41811399--41811564	40	4.2	40	78	8	153	26	22	26	24	2.00
41819380--41819521	40	3.5	40	83	1	124	27	23	26	22	1.99
41819419--41819547	40	3.2	39	84	6	152	24	22	27	25	2.00
41822836--41822867	14	2.4	13	90	10	55	62	12	6	18	1.50
41825593--41825643	25	2.0	25	88	0	75	31	21	17	29	1.96
41825683--41825733	21	2.4	22	93	6	88	35	17	17	29	1.93
41825683--41825733	11	4.8	11	92	7	88	35	17	17	29	1.93
41825780--41825849	25	2.8	25	100	0	140	24	27	24	24	2.00
41829288--41829373	29	3.0	29	81	3	84	22	36	16	25	1.94
41829326--41829389	29	2.2	29	88	0	92	23	28	17	31	1.97
41831148--41831189	18	2.5	17	88	7	59	59	0	7	33	1.25
41831158--41831194	18	2.1	18	100	0	74	56	0	5	37	1.22
41832804--41832869	33	2.0	32	88	2	96	34	25	18	21	1.96
41834565--41834612	17	2.6	18	83	9	62	70	4	2	22	1.15
41835542--41835573	15	2.1	15	94	0	55	68	9	6	15	1.36
41837276--41837787	255	2.0	254	93	0	862	30	21	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41840879--41841070	47	4.1	47	88	0	249	33	12	29	24	1.92
41841044--41841180	46	3.0	46	84	0	184	36	8	29	25	1.85
41842670--41842941	40	6.8	40	92	0	427	23	22	28	25	2.00
41846130--41846321	94	2.0	93	87	4	269	33	12	28	25	1.92
41846130--41846321	47	4.1	47	86	0	240	33	12	28	25	1.92
41846295--41846431	46	3.0	46	85	0	193	35	8	29	25	1.86
41852312--41852410	35	2.8	36	76	11	107	41	18	10	30	1.83
41860581--41860647	18	3.7	18	84	4	66	47	11	14	25	1.79
41860973--41861158	27	6.9	27	80	0	210	40	21	16	21	1.91
41860973--41861156	81	2.3	81	87	1	253	40	21	16	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292