genome.fa.s9.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  168  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49894991--49895024	17	1.9	18	88	5	52	38	2	11	47	1.55
49895864--49895909	18	2.6	18	100	0	92	34	13	26	26	1.92
49895877--49895916	18	2.2	18	86	0	53	40	12	20	27	1.88
49896924--49896965	22	1.9	22	95	0	75	35	7	9	47	1.64
49899174--49899206	13	2.3	15	90	10	52	54	6	3	36	1.41
49902829--49902858	15	2.0	15	93	0	51	23	13	6	56	1.60
49903571--49903634	29	2.2	30	85	2	85	28	18	23	29	1.98
49911090--49911208	58	2.1	58	84	6	152	33	21	10	34	1.88
49913071--49913121	6	8.2	6	75	16	50	60	5	0	33	1.21
49913106--49913140	17	2.0	18	88	5	54	51	0	5	42	1.25
49913731--49913771	21	2.0	21	85	0	55	65	2	2	29	1.18
49917707--49917761	28	2.0	28	88	0	83	25	23	20	30	1.98
49923575--49923632	27	2.2	24	82	14	71	44	8	1	44	1.44
49936996--49937029	10	3.3	10	84	8	50	58	11	20	8	1.59
49936998--49937037	21	1.9	21	89	0	62	57	12	22	7	1.60
49942379--49942430	21	2.3	23	81	15	65	61	5	1	30	1.30
49942384--49942428	22	2.1	22	88	8	67	60	6	0	33	1.23
49952565--49952710	73	2.0	74	91	1	240	50	16	12	20	1.77
49953038--49953093	16	3.5	16	78	4	60	87	8	3	0	0.65
49953037--49953093	23	2.5	23	85	2	80	85	10	3	0	0.70
49953039--49953095	14	3.9	14	78	17	53	85	8	5	0	0.72
49955486--49955529	22	1.9	24	81	9	56	45	0	4	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49955641--49955685	19	2.4	19	81	3	56	26	2	4	66	1.22
49956381--49956427	24	2.0	24	87	8	69	42	0	0	57	0.98
49956450--49956506	30	1.9	30	96	0	105	45	5	21	28	1.73
49959182--49959214	7	4.7	7	92	0	57	30	0	12	57	1.35
49959674--49959776	30	3.4	30	74	2	100	30	38	17	13	1.88
49960295--49960420	54	2.3	55	82	8	141	43	2	6	47	1.41
49963426--49963795	125	3.0	126	91	4	588	27	17	15	39	1.90
49966688--49966764	38	2.0	38	94	0	136	19	28	11	40	1.87
49966696--49966763	22	3.4	22	64	29	60	19	29	8	42	1.81
49974940--49974981	20	2.1	20	100	0	84	26	40	23	9	1.85
49978176--49978223	20	2.5	20	75	3	53	72	4	2	20	1.11
49986002--49986109	37	2.9	37	93	1	173	25	31	18	24	1.97
49986251--49986539	48	6.0	48	95	0	497	29	27	6	35	1.82
49991827--49991869	13	3.5	13	78	18	56	48	11	0	39	1.40
49991827--49991878	23	2.3	23	96	0	95	48	11	0	40	1.40
49991827--49991891	23	2.8	23	86	4	60	50	10	0	38	1.37
49992566--49992608	22	2.0	22	85	0	59	53	2	6	37	1.41
49992859--49992918	30	2.0	30	90	0	93	36	8	18	36	1.81
49998289--49998436	56	2.6	56	94	0	260	33	24	13	28	1.93
50000825--50000868	21	2.1	21	100	0	88	47	0	22	29	1.51
50003730--50003760	15	2.1	15	100	0	62	29	6	12	51	1.65
50009461--50009491	15	2.1	15	93	0	53	54	16	16	12	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50009697--50009769	36	2.0	36	86	5	103	26	21	16	35	1.94
50010878--50011025	74	2.0	74	98	0	287	24	15	25	35	1.94
50013255--50013318	28	2.3	27	76	5	74	18	21	26	32	1.97
50013279--50013341	33	1.9	33	90	0	99	25	22	26	25	2.00
50014582--50014708	68	1.9	67	85	9	177	49	3	3	42	1.39
50016881--50016978	48	2.0	48	100	0	196	30	12	6	51	1.64
50019504--50019691	40	4.6	41	80	6	186	32	25	14	27	1.94
50019504--50019664	81	2.0	82	84	7	211	31	25	15	27	1.96
50020872--50020938	35	1.9	35	93	0	116	25	10	22	41	1.85
50026188--50026260	32	2.3	32	95	0	137	26	34	24	15	1.94
50026188--50026278	32	2.8	32	86	3	103	25	32	25	16	1.96
50027132--50027277	40	3.6	41	82	8	183	30	27	16	26	1.97
50028439--50028698	90	2.9	90	86	2	324	28	11	11	47	1.75
50035886--50035951	34	1.9	34	96	0	123	18	6	34	40	1.75
50037469--50037509	21	2.0	21	95	0	73	26	19	29	24	1.98
50041961--50041987	13	2.1	13	100	0	54	14	37	33	14	1.88
50042660--50042742	18	4.6	18	81	15	100	40	6	18	34	1.75
50042650--50042742	36	2.6	36	80	13	102	41	5	18	34	1.73
50045606--50045675	20	3.6	19	84	9	79	57	7	0	35	1.26
50045606--50045690	19	4.2	19	79	14	82	55	5	0	38	1.24
50047779--50047807	13	2.2	13	100	0	58	51	6	17	24	1.69
50048013--50048039	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50053622--50053663	3	14.0	3	90	9	68	30	0	0	69	0.89
50056600--50056739	55	2.5	55	80	4	140	27	28	25	17	1.98
50057253--50057299	23	2.0	23	83	0	58	21	31	10	36	1.88
50062820--50062928	37	2.9	37	93	0	173	27	30	18	23	1.98
50063079--50063259	46	3.9	46	77	11	131	25	30	9	33	1.89
50063143--50063477	47	7.1	47	90	3	501	26	30	11	31	1.92
50063143--50063455	98	3.3	96	91	4	494	26	30	12	31	1.92
50063143--50063477	145	2.4	140	91	2	517	26	30	11	31	1.92
50070502--50070579	31	2.5	31	85	2	113	28	24	17	29	1.98
50070771--50070819	24	2.0	25	84	4	64	26	20	20	32	1.97
50070885--50070921	10	3.7	10	92	7	58	32	18	10	37	1.86
50070865--50070915	21	2.4	21	86	0	66	29	19	13	37	1.90
50070951--50070999	25	2.0	25	83	0	62	26	14	22	36	1.92
50078967--50079088	6	20.3	6	98	0	181	27	5	0	66	1.14
50079191--50079218	3	9.3	3	100	0	56	35	0	0	64	0.94
50079222--50079271	25	2.0	26	88	4	75	32	2	12	54	1.49
50083910--50083938	10	2.9	10	100	0	58	93	6	0	0	0.36
50083907--50083963	27	2.2	25	90	9	89	87	7	5	0	0.66
50083907--50083941	1	35.0	1	88	0	52	94	5	0	0	0.32
50086150--50086889	145	5.1	145	97	0	1367	31	16	17	34	1.92
50086150--50086889	72	10.2	72	94	1	1275	31	16	17	34	1.92
50086895--50087152	54	4.8	54	95	0	453	29	15	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50088828--50088911	3	28.0	3	100	0	168	33	0	0	66	0.92
50089043--50089092	25	2.0	26	88	4	75	32	2	12	54	1.49
50089319--50089378	9	5.9	11	72	20	51	35	1	5	58	1.30
50098588--50098923	47	7.1	47	90	2	456	31	10	30	27	1.90
50098687--50098764	25	3.2	24	66	23	65	28	7	32	32	1.85
50098588--50098923	141	2.3	143	90	2	532	31	10	30	27	1.90
50098897--50099061	46	3.6	46	93	0	267	35	10	30	23	1.89
50106670--50106752	40	2.1	40	86	0	112	20	26	18	34	1.95
50141034--50141080	23	2.0	23	100	0	94	34	8	12	44	1.73
50143094--50143164	28	2.5	28	88	0	97	29	11	28	30	1.91
50143111--50143172	28	2.2	28	85	0	88	37	8	24	30	1.84
50146185--50146221	18	2.1	18	100	0	74	32	10	21	35	1.88
50146187--50146227	18	2.3	18	91	0	64	34	14	17	34	1.90
50157075--50157164	40	2.2	40	88	0	126	22	14	27	35	1.93
50157145--50157215	28	2.5	28	83	0	97	22	11	32	33	1.90
50159923--50160282	27	13.3	28	78	6	156	36	20	9	33	1.85
50159923--50160057	55	2.5	55	83	7	175	38	20	8	31	1.84
50159923--50160293	54	6.9	54	74	6	198	37	20	9	32	1.85
50160248--50160355	27	3.9	27	71	13	76	43	17	7	31	1.77
50160396--50160469	27	2.7	27	76	12	71	37	20	20	21	1.94
50160409--50160473	27	2.4	27	82	5	78	35	18	24	21	1.96
50161097--50161144	25	1.9	25	95	0	87	27	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50161171--50161246	20	3.9	20	83	8	95	36	9	21	32	1.85
50161173--50161229	9	5.8	10	78	17	66	36	8	21	33	1.84
50161296--50161418	26	4.8	26	91	1	187	26	23	21	27	1.99
50161563--50161654	42	2.2	42	96	0	166	27	11	21	39	1.89
50168113--50168219	40	2.7	40	86	1	144	19	15	28	35	1.93
50168200--50168276	28	2.8	28	86	6	120	24	12	32	29	1.93
50173174--50173241	24	2.8	25	86	4	95	16	23	19	41	1.90
50181062--50181120	18	3.3	18	74	9	57	37	16	20	25	1.93
50181378--50181427	23	2.2	23	86	13	68	42	20	14	24	1.88
50181463--50181578	27	4.3	27	83	0	124	23	18	17	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292