genome.fa.s9.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  157  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46745712--46745765	5	11.2	5	74	21	53	40	18	18	22	1.91
46745702--46745785	38	2.2	38	82	4	107	41	14	21	22	1.89
46747334--46747673	134	2.5	133	80	8	361	35	18	17	29	1.93
46748065--46748097	16	2.1	16	100	0	66	45	12	12	30	1.78
46748326--46748350	2	12.5	2	100	0	50	52	0	0	48	1.00
46748443--46748481	2	19.5	2	100	0	78	51	0	0	48	1.00
46749403--46749432	11	2.6	11	94	5	51	80	3	6	10	1.01
46751368--46751475	26	4.2	26	93	0	189	36	24	7	32	1.83
46760287--46760348	11	6.3	10	74	18	51	69	4	0	25	1.08
46760269--46760349	9	8.7	9	72	22	69	65	3	1	29	1.17
46762507--46762745	121	2.0	121	95	0	433	31	15	24	28	1.95
46769415--46769473	29	2.0	30	90	9	95	27	3	11	57	1.50
46770426--46770468	18	2.4	18	84	7	52	62	6	2	27	1.33
46771041--46771130	28	3.2	29	74	16	73	34	3	1	61	1.20
46778921--46779141	40	5.5	40	87	4	286	25	20	25	27	1.99
46778933--46779181	120	2.1	121	80	7	276	26	20	24	27	1.99
46784789--46784942	67	2.3	66	82	7	177	32	16	29	21	1.96
46787228--46787288	30	2.0	30	96	3	113	24	13	3	59	1.49
46787235--46787304	31	2.3	30	87	5	95	24	15	5	54	1.63
46792479--46792627	21	7.2	21	65	20	82	36	18	30	14	1.91
46792449--46792663	41	5.2	41	91	0	322	36	18	28	16	1.93
46792459--46792647	20	9.2	20	67	13	107	37	18	30	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46794789--46794826	16	2.5	15	87	8	51	73	10	0	15	1.09
46797558--46797696	66	2.1	65	83	9	167	24	20	29	25	1.99
46806027--46806193	39	4.3	39	91	0	271	22	27	20	29	1.98
46817462--46817564	29	3.6	27	81	5	98	29	33	16	21	1.95
46825477--46825579	29	3.6	27	81	5	98	29	33	16	21	1.95
46830240--46830407	40	4.2	40	81	1	176	23	26	23	26	2.00
46837294--46837362	27	2.6	27	93	4	113	44	26	10	18	1.81
46841550--46841603	28	2.0	28	96	3	101	48	20	11	20	1.80
46850854--46851008	24	6.0	24	70	17	73	30	3	3	61	1.29
46850857--46850909	16	3.2	17	78	10	58	32	1	3	62	1.24
46850879--46850978	3	33.0	3	67	23	50	31	4	2	63	1.24
46850849--46850956	41	2.8	40	80	16	113	31	3	1	62	1.23
46850849--46851107	20	12.9	20	65	19	80	31	5	2	61	1.32
46850849--46850978	11	11.5	11	67	25	53	30	3	2	63	1.25
46851047--46851105	18	3.4	17	76	21	59	28	5	1	64	1.24
46851365--46851423	17	3.6	16	74	21	59	33	3	0	62	1.12
46855388--46855555	40	4.2	40	82	1	185	24	26	22	26	2.00
46863401--46863567	40	4.2	40	82	2	185	24	26	22	26	2.00
46867384--46867551	40	4.2	40	81	6	196	25	21	27	25	1.99
46874845--46875051	40	5.2	40	90	2	294	23	21	28	27	1.99
46874841--46875051	79	2.7	79	88	1	316	23	21	27	27	1.99
46880953--46881062	28	3.9	29	80	10	122	28	19	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46884259--46884309	3	17.0	3	95	0	93	64	0	1	33	1.05
46891751--46891934	40	4.6	39	79	6	156	28	22	26	22	1.99
46899825--46899925	39	2.5	40	85	1	132	30	22	24	21	1.99
46899825--46900007	40	4.6	40	82	3	181	27	22	26	23	1.99
46902459--46902589	57	2.3	57	81	6	160	29	18	27	25	1.98
46902493--46902598	28	3.8	28	79	3	90	29	20	24	25	1.99
46902543--46902617	28	2.7	28	87	4	80	26	18	30	24	1.98
46909125--46909151	2	13.5	2	100	0	54	48	0	0	51	1.00
46909284--46909311	2	14.0	2	100	0	56	50	0	0	50	1.00
46917060--46917088	2	14.5	2	100	0	58	48	0	0	51	1.00
46917088--46917124	2	18.5	2	100	0	74	0	0	48	51	1.00
46917335--46917369	2	18.5	2	88	11	56	51	0	0	48	1.00
46919587--46919748	66	2.5	66	85	6	213	41	3	3	51	1.35
46919729--46919760	10	3.3	10	91	8	57	46	0	0	53	1.00
46920374--46920416	21	2.0	21	86	4	59	41	2	0	55	1.12
46920905--46920984	40	2.0	40	97	0	151	30	26	5	38	1.77
46922772--46922805	12	2.9	12	86	4	52	32	0	0	67	0.91
46932898--46932936	19	2.1	19	85	9	53	17	5	2	74	1.12
46932880--46932945	22	3.0	21	79	18	64	19	4	3	72	1.15
46933133--46933228	3	32.0	3	100	0	192	33	0	0	66	0.92
46935380--46935437	29	2.0	28	93	3	98	48	10	22	18	1.78
46937962--46938139	94	1.9	94	94	0	311	30	26	25	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46944284--46944492	39	5.3	39	87	0	292	22	25	19	32	1.97
46944284--46944490	78	2.7	78	93	0	351	22	25	19	32	1.98
46947214--46947278	27	2.4	27	87	5	87	10	4	7	76	1.13
46952372--46952399	14	2.0	14	100	0	56	28	0	28	42	1.56
46953911--46953940	11	2.7	11	94	0	51	46	13	0	40	1.43
46955346--46955403	13	4.8	13	68	20	54	62	1	1	34	1.16
46955346--46955438	8	12.6	8	66	21	60	59	4	1	35	1.24
46955346--46955390	21	2.1	21	87	0	63	60	2	2	35	1.22
46955345--46955411	34	2.0	34	100	0	134	59	2	1	35	1.22
46955380--46955436	25	2.5	21	81	15	69	61	5	0	33	1.18
46955654--46955701	21	2.2	22	85	10	64	52	4	8	35	1.51
46969073--46969236	71	2.3	71	100	0	328	18	28	17	35	1.94
46969073--46969270	71	2.8	70	91	3	258	20	28	17	33	1.95
46976643--46976806	71	2.3	71	100	0	328	18	28	17	35	1.94
46976643--46976840	71	2.8	70	91	3	258	20	28	17	33	1.95
46986220--46986257	20	1.9	20	88	0	58	7	26	23	42	1.81
46986235--46986350	58	2.0	58	86	3	162	17	17	25	40	1.90
46987950--46987993	19	2.3	19	84	0	61	34	27	20	18	1.96
46988017--46988053	19	1.9	19	88	0	56	37	24	13	24	1.91
46987969--46988055	38	2.3	38	80	4	104	33	27	18	20	1.96
46991744--46991772	8	3.8	8	90	9	51	89	0	10	0	0.48
46995238--46995299	30	2.1	30	96	0	115	45	19	24	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47001808--47001833	8	3.2	8	100	0	52	23	11	23	42	1.86
47005485--47005814	173	1.9	172	87	1	482	26	11	24	37	1.89
47007996--47008203	55	3.9	54	81	5	224	23	24	16	35	1.95
47007995--47008195	53	3.7	53	81	5	199	22	24	17	35	1.95
47008182--47008289	47	2.3	47	91	0	171	28	24	12	34	1.92
47008275--47008380	45	2.3	45	79	7	106	25	23	16	33	1.96
47015766--47015931	40	4.2	40	79	3	158	25	27	21	25	1.99
47015782--47015931	79	1.9	79	82	8	189	24	28	21	26	1.99
47021441--47021667	48	4.8	48	73	12	202	25	19	25	29	1.98
47024088--47024135	25	1.9	25	82	0	60	31	18	0	50	1.48
47024291--47024517	46	4.9	46	93	1	357	22	24	13	39	1.90
47026635--47026677	11	3.7	11	82	11	50	60	2	0	37	1.10
47026640--47026718	30	2.6	30	75	13	72	54	5	0	40	1.22
47029320--47029547	46	5.0	46	93	1	359	22	23	14	39	1.91
47031663--47031705	11	3.7	11	82	11	50	60	2	0	37	1.10
47031668--47031746	30	2.6	30	75	13	72	54	5	0	40	1.22
47033828--47033946	44	2.6	47	84	9	149	27	30	18	23	1.98
47033828--47034040	47	4.6	45	76	10	155	25	31	19	23	1.98
47033780--47034084	94	3.3	92	78	9	305	24	31	19	25	1.98
47040817--47041001	40	4.6	39	83	4	199	28	22	24	24	1.99
47040816--47041022	80	2.6	80	81	4	238	27	21	25	25	2.00
47040815--47041022	40	5.2	39	82	5	193	27	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47042952--47043180	48	4.9	48	76	9	238	25	19	25	29	1.98
47045673--47045700	2	14.0	2	100	0	56	50	0	0	50	1.00
47054513--47054556	22	2.0	22	90	0	70	59	2	0	38	1.10
47054513--47054548	12	3.3	11	88	11	56	66	0	0	33	0.92
47054508--47054555	10	4.6	10	82	10	51	58	4	0	37	1.18
47057285--47057313	13	2.1	14	93	6	51	68	0	0	31	0.89
47057301--47057343	17	2.7	15	76	13	50	62	2	2	32	1.20
47057301--47057346	8	5.8	8	78	19	51	63	2	2	32	1.19
47057305--47057354	25	2.0	23	85	11	64	64	2	2	32	1.16
47074500--47074531	17	1.9	17	93	6	57	62	0	25	12	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292