Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  239  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69438449--69438496
18
2.7
18
71
12
53
27
0
2
70
0.98
69438449--69438498
17
2.7
19
79
14
61
30
0
2
68
1.01
69440874--69440909
18
1.9
18
88
5
54
63
0
30
5
1.17
69454658--69454697
21
1.9
21
89
0
62
55
10
10
25
1.64
69457317--69457367
2
25.5
2
100
0
102
50
0
49
0
1.00
69460958--69461005
16
3.1
15
90
6
69
64
2
2
31
1.16
69460954--69461005
8
6.5
8
82
8
61
65
1
1
30
1.14
69460953--69461009
24
2.4
24
79
5
71
64
1
3
29
1.20
69461163--69461227
25
2.8
24
83
6
80
52
6
7
33
1.55
69461244--69461304
25
2.5
25
81
2
70
65
0
3
31
1.09
69461865--69461979
30
3.8
30
91
0
185
22
3
48
25
1.66
69462727--69462775
14
3.5
14
83
8
55
63
4
12
20
1.45
69462756--69462923
73
2.3
74
84
5
214
35
20
17
26
1.94
69462905--69462939
14
2.5
14
90
0
61
60
5
17
17
1.55
69462745--69463078
164
2.1
160
94
3
589
36
20
17
24
1.94
69462836--69463012
89
2.0
89
87
4
259
36
19
18
25
1.94
69462919--69463159
72
3.3
72
85
5
306
35
20
17
26
1.95
69463070--69463416
140
2.5
140
93
0
604
37
20
16
25
1.93
69463249--69463354
54
1.9
54
83
9
135
38
19
15
26
1.91
69463345--69463510
72
2.3
71
88
4
244
41
20
15
22
1.89
69463385--69463614
122
1.9
125
89
2
367
36
23
14
25
1.93
69463510--69463788
75
3.7
75
83
9
340
33
22
15
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69463774--69463804
16
1.9
16
93
0
53
64
6
12
16
1.47
69463616--69463968
89
4.1
87
85
8
470
36
20
16
27
1.93
69463883--69464107
73
3.1
72
82
3
297
33
20
16
29
1.95
69465659--69465689
1
31.0
1
93
0
53
0
3
0
96
0.21
69466270--69466328
5
12.0
5
79
12
52
1
15
1
81
0.86
69466287--69466328
11
4.0
10
82
17
50
2
14
0
83
0.75
69466270--69466316
14
3.4
14
84
0
67
2
12
2
82
0.84
69470169--69470216
16
3.1
15
90
6
69
64
2
2
31
1.16
69470165--69470216
8
6.5
8
82
8
61
65
1
1
30
1.14
69470164--69470220
24
2.4
24
79
5
71
64
1
3
29
1.20
69470371--69470435
25
2.8
24
83
6
80
52
6
7
33
1.55
69470454--69470504
14
3.9
13
73
17
52
64
0
3
31
1.11
69470452--69470513
25
2.5
25
83
0
79
64
0
3
32
1.09
69471078--69471192
30
3.8
30
91
0
185
22
3
48
25
1.66
69472848--69472945
48
2.0
48
100
0
196
19
18
31
30
1.96
69473472--69473517
6
7.7
6
95
0
83
30
0
2
67
1.03
69478486--69478520
18
1.9
18
88
0
52
48
0
0
51
1.00
69479410--69479454
24
1.9
23
86
4
63
28
17
20
33
1.95
69497348--69497402
14
3.8
14
75
20
51
67
9
1
21
1.28
69505238--69505268
6
5.2
6
100
0
62
32
16
51
0
1.44
69510962--69510989
13
2.2
13
100
0
56
71
0
0
28
0.86
69512158--69512191
7
4.7
7
92
7
59
14
0
44
41
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69512158--69512191
15
2.4
14
95
5
59
14
0
44
41
1.45
69513208--69513242
17
2.1
17
100
0
70
28
17
37
17
1.92
69517888--69517939
27
1.9
27
88
0
77
34
21
1
42
1.64
69517928--69517962
15
2.3
15
95
0
61
25
11
0
62
1.28
69519068--69519096
14
2.1
14
100
0
58
58
0
20
20
1.39
69534589--69534647
6
9.8
6
77
14
59
79
5
3
11
1.01
69536100--69536149
25
2.0
25
88
7
75
74
0
6
20
1.03
69541349--69541432
3
28.0
3
84
4
107
28
4
1
65
1.20
69542976--69543037
6
10.3
6
89
0
88
16
3
3
77
1.03
69546561--69546586
7
3.7
7
100
0
52
15
0
15
69
1.20
69548600--69548648
20
2.4
21
76
10
57
40
10
12
36
1.77
69549478--69549530
25
2.1
25
100
0
106
58
0
3
37
1.16
69552969--69553005
18
2.1
18
90
5
58
27
2
10
59
1.44
69562159--69562232
24
3.2
21
71
23
60
43
4
0
52
1.20
69563221--69563253
17
2.1
16
88
11
50
30
0
0
69
0.88
69563300--69563358
21
2.8
22
85
7
70
23
0
6
69
1.12
69563329--69563377
26
2.0
24
88
8
71
32
0
4
63
1.13
69563332--69563390
26
2.3
26
80
8
68
27
1
3
67
1.16
69571712--69571744
13
2.6
13
90
4
50
39
0
12
48
1.40
69577065--69577133
5
13.8
5
74
19
56
18
2
0
78
0.88
69577064--69577113
6
8.5
6
85
12
68
16
2
0
82
0.77
69577064--69577103
13
3.2
13
93
6
66
15
0
0
85
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69577070--69577133
19
3.5
18
80
8
76
18
3
0
78
0.89
69577064--69577135
25
3.0
24
84
10
76
19
4
0
76
0.95
69577064--69577133
30
2.3
31
87
4
99
18
2
0
78
0.87
69580037--69580069
13
2.6
13
90
4
50
39
0
12
48
1.40
69584268--69584296
7
4.1
7
100
0
58
13
0
0
86
0.58
69584382--69584419
20
1.9
20
84
10
51
42
10
0
47
1.38
69591836--69591873
20
1.9
20
84
10
51
42
10
0
47
1.38
69602559--69602585
4
6.8
4
100
0
54
77
0
0
22
0.76
69606691--69606752
28
2.1
30
85
5
83
20
4
1
72
1.12
69606693--69606752
22
2.6
25
84
10
74
20
5
1
73
1.11
69612189--69612222
8
4.1
8
88
3
50
17
0
0
82
0.67
69612191--69612223
13
2.6
13
90
4
50
15
0
0
84
0.61
69614075--69614131
30
1.9
30
85
0
78
24
33
29
12
1.92
69625707--69625740
17
2.0
17
88
0
50
47
26
0
26
1.53
69629781--69629911
35
3.5
36
81
11
140
32
22
10
34
1.89
69629822--69629914
40
2.5
37
87
8
127
33
25
8
32
1.86
69638077--69638106
16
1.9
15
93
6
51
43
6
3
46
1.46
69638096--69638133
17
2.2
18
95
4
69
44
13
0
42
1.43
69640789--69640835
7
6.2
8
95
2
64
27
0
6
65
1.16
69640794--69640842
22
2.2
21
83
16
64
26
2
4
67
1.19
69640795--69640843
15
3.3
14
91
8
71
24
2
4
69
1.17
69640795--69640843
8
6.6
7
95
4
71
24
2
4
69
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69641222--69641264
22
2.0
22
81
9
52
51
27
0
20
1.48
69641410--69641460
15
3.6
14
84
10
59
43
31
0
25
1.55
69641422--69641471
14
3.5
14
81
13
57
46
32
0
22
1.52
69641456--69641524
21
3.3
22
75
17
74
36
44
0
18
1.50
69641546--69641588
14
2.9
15
79
6
61
46
27
2
23
1.64
69641546--69641593
14
3.4
14
82
2
60
47
25
2
25
1.62
69641916--69641963
22
2.1
22
84
3
60
25
0
25
50
1.50
69642005--69642330
41
8.0
41
90
0
490
21
24
22
31
1.98
69642310--69642356
23
2.0
24
95
4
87
21
25
19
34
1.96
69649251--69649322
34
2.1
34
84
5
92
54
15
1
29
1.50
69650380--69650413
17
2.0
17
100
0
68
41
5
23
29
1.78
69653997--69654021
6
4.2
6
100
0
50
48
0
0
52
1.00
69656670--69656769
50
2.0
50
98
0
191
25
24
15
36
1.94
69660262--69660317
15
3.5
15
77
17
67
50
0
0
50
1.00
69660277--69660315
19
2.1
19
90
0
60
53
0
0
46
1.00
69660350--69660386
16
2.3
16
86
13
58
40
0
0
59
0.97
69660405--69660448
22
2.0
22
86
4
63
56
0
0
43
0.99
69660427--69660458
16
1.9
17
93
6
57
43
0
0
56
0.99
69663296--69663418
33
3.8
32
78
9
106
34
11
22
31
1.90
69663322--69663411
33
2.8
33
83
8
112
32
10
24
33
1.88
69667188--69667248
21
3.1
21
62
22
51
49
1
1
47
1.21
69669440--69669475
5
7.4
5
93
6
65
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69670732--69670788
15
3.9
15
88
2
89
35
0
12
52
1.39
69671173--69671231
21
2.7
21
86
5
73
15
25
25
33
1.95
69671170--69671243
21
3.4
21
77
3
67
14
21
25
37
1.92
69673809--69673835
2
13.5
2
100
0
54
48
0
0
51
1.00
69674301--69674442
39
3.6
39
85
3
153
21
21
29
27
1.98
69679738--69679767
2
15.0
2
100
0
60
50
0
0
50
1.00
69680234--69680352
39
3.1
39
79
2
114
22
21
28
27
1.99
69687399--69687710
126
2.5
126
85
5
396
25
14
20
38
1.91
69687399--69687751
126
2.8
127
81
6
331
26
15
19
37
1.92
69695174--69695302
44
2.8
45
82
4
152
34
13
24
27
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292