Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  185  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55161750--55161839
38
2.3
38
84
9
110
36
4
2
56
1.32
55161765--55161871
14
7.9
14
67
20
68
34
4
1
58
1.29
55161785--55161980
25
7.8
25
71
17
129
32
7
5
55
1.51
55161806--55161890
27
3.0
29
76
13
95
34
4
3
57
1.37
55162263--55162536
48
5.7
48
81
1
307
27
28
16
27
1.97
55162263--55162540
96
2.9
96
93
0
457
27
28
16
27
1.97
55164749--55164780
13
2.5
13
94
0
55
9
15
0
75
1.05
55165075--55165107
9
3.8
9
84
8
50
0
15
0
84
0.61
55169447--55169501
3
18.3
3
100
0
110
67
0
0
32
0.91
55174250--55174321
24
2.9
24
87
4
90
43
8
4
44
1.53
55174263--55174321
24
2.5
24
91
0
100
40
8
5
45
1.56
55175300--55175339
19
2.1
19
85
0
53
45
10
5
40
1.60
55175778--55175822
22
2.1
22
88
12
67
46
8
0
44
1.34
55177264--55178048
266
3.0
258
82
4
887
28
16
16
38
1.90
55178069--55178099
7
4.6
7
96
4
55
48
35
0
16
1.46
55180196--55180220
6
4.2
6
100
0
50
68
32
0
0
0.90
55181358--55181416
24
2.5
23
84
10
75
67
3
11
16
1.34
55183338--55183418
40
2.0
40
100
0
162
35
22
7
34
1.82
55185095--55185302
103
2.0
103
88
0
308
21
16
13
47
1.82
55202436--55202542
34
3.1
34
77
5
99
28
19
24
28
1.99
55204376--55204563
84
2.2
84
90
0
304
50
8
9
31
1.64
55206342--55206370
6
4.8
6
100
0
58
86
0
13
0
0.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55206785--55207099
84
3.7
87
79
10
265
46
9
8
35
1.67
55207124--55207340
89
2.4
88
87
6
296
41
13
11
33
1.82
55211906--55211973
3
22.7
3
100
0
136
66
0
0
33
0.92
55212051--55212098
24
2.0
24
87
0
69
37
4
10
47
1.57
55216388--55216439
24
2.2
24
85
0
68
34
3
11
50
1.57
55216605--55216657
3
17.7
3
100
0
106
67
0
0
32
0.91
55222025--55222077
28
1.9
28
88
3
81
24
26
20
28
1.99
55222063--55222146
32
2.8
28
76
23
82
27
28
19
25
1.98
55222167--55222222
20
2.8
20
83
2
69
33
23
16
26
1.95
55232339--55232514
40
4.4
40
77
5
167
25
24
25
25
2.00
55232340--55232514
80
2.2
81
80
3
192
25
24
25
24
2.00
55232774--55232846
36
2.0
36
100
0
146
32
8
16
42
1.78
55242137--55242213
29
2.7
28
78
6
82
24
12
22
40
1.89
55242141--55242260
56
2.1
57
82
13
149
25
10
21
42
1.85
55251995--55252109
43
2.7
44
82
9
130
23
18
25
33
1.97
55254689--55254719
16
1.9
16
93
0
53
41
0
25
32
1.56
55257562--55257592
15
2.0
16
93
6
55
83
3
12
0
0.75
55261066--55261100
17
2.1
17
89
5
54
20
5
20
54
1.64
55261646--55261671
13
2.0
13
100
0
52
53
15
15
15
1.73
55275505--55275544
10
4.0
10
84
9
55
5
20
10
65
1.42
55276191--55276321
69
1.9
70
87
1
192
30
24
16
28
1.97
55277306--55277340
17
2.1
17
89
5
54
22
2
0
74
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55286513--55286639
40
3.2
40
85
7
152
22
29
25
22
1.99
55298123--55298310
21
9.0
21
72
9
132
19
22
15
42
1.88
55298112--55298266
42
3.7
42
79
8
190
18
21
15
44
1.86
55298113--55298304
84
2.3
84
84
6
248
18
22
16
43
1.88
55300841--55301017
71
2.5
72
90
1
266
25
28
23
22
1.99
55305808--55305938
44
3.0
44
85
4
174
44
11
19
25
1.84
55306040--55306255
99
2.2
101
83
3
267
38
15
23
22
1.92
55313811--55313865
22
2.5
22
90
0
83
12
30
27
29
1.93
55317250--55317277
6
4.7
6
100
0
56
0
14
0
85
0.59
55318105--55318277
6
28.2
6
76
14
77
72
1
2
23
1.05
55318104--55318156
17
3.3
16
78
17
56
81
1
3
13
0.92
55318179--55318479
3
99.7
3
80
5
338
62
0
5
31
1.23
55319538--55319575
18
2.2
17
86
13
51
10
0
39
50
1.37
55320011--55320461
89
5.0
95
73
11
342
28
23
17
31
1.97
55319980--55320271
140
2.1
140
82
5
349
28
23
17
30
1.97
55320011--55320445
180
2.4
185
81
3
513
28
23
17
31
1.96
55320376--55320877
44
10.8
44
67
14
179
29
23
18
28
1.98
55320620--55320880
140
1.9
138
80
10
309
31
22
17
29
1.97
55320794--55320866
21
3.4
21
66
7
65
32
26
10
30
1.90
55320797--55321237
181
2.5
176
84
6
534
29
20
16
33
1.94
55323392--55323466
28
2.7
29
81
6
91
24
12
34
29
1.91
55330683--55330718
16
2.2
16
95
0
63
52
19
19
8
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55330932--55331003
28
2.6
29
80
12
87
23
12
34
29
1.92
55332040--55332073
18
1.9
18
88
5
52
41
11
17
29
1.85
55332738--55332783
24
2.0
24
87
12
69
2
28
0
69
1.00
55332746--55332804
16
3.6
16
82
11
59
0
20
0
79
0.73
55332746--55332804
27
2.1
28
87
9
86
0
20
0
79
0.73
55333160--55333369
103
2.0
103
100
0
420
37
21
18
22
1.94
55339611--55339675
29
2.2
29
97
0
121
29
16
27
26
1.97
55347560--55347624
29
2.2
29
97
0
121
29
16
27
26
1.97
55347725--55347757
2
16.5
2
93
0
57
45
0
3
51
1.16
55349597--55349966
6
62.2
6
83
6
398
64
1
4
30
1.22
55349648--55349966
3
106.3
3
83
4
394
61
1
4
32
1.24
55349965--55350006
3
13.7
3
90
5
66
35
0
0
64
0.94
55350603--55350643
9
5.0
8
85
14
57
73
0
24
2
0.96
55350603--55350643
17
2.5
15
85
14
55
73
0
24
2
0.96
55352077--55352158
31
2.7
30
83
5
103
35
6
9
48
1.61
55352078--55352169
30
3.1
29
75
10
87
33
5
9
51
1.58
55353415--55353472
25
2.3
25
96
0
107
34
3
15
46
1.63
55353474--55353584
56
2.0
57
82
12
140
39
1
16
42
1.58
55353481--55353601
28
4.3
27
79
8
116
38
2
17
42
1.63
55353491--55353601
56
2.0
56
82
7
136
38
2
16
42
1.62
55353759--55354092
126
2.7
124
85
3
449
39
17
17
26
1.91
55359104--55359286
64
3.0
61
82
10
205
50
10
6
33
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55359104--55359250
63
2.3
63
87
7
203
48
10
5
34
1.61
55359908--55359957
25
2.0
25
100
0
100
28
28
20
24
1.99
55362052--55362109
29
2.1
27
87
6
80
50
8
8
32
1.64
55364197--55364254
15
3.7
15
72
14
55
67
0
10
22
1.21
55365385--55365461
39
2.0
39
82
5
93
45
1
0
53
1.08
55365766--55365792
13
2.1
13
100
0
54
0
0
7
92
0.38
55367250--55367322
36
2.0
36
100
0
146
43
16
9
30
1.80
55371696--55371742
22
2.1
22
84
7
60
65
0
0
34
0.93
55371696--55371736
18
2.3
18
87
4
57
65
0
0
34
0.93
55374794--55374844
24
2.0
25
82
14
61
50
5
0
43
1.26
55389439--55389804
46
8.0
46
88
1
484
41
14
23
20
1.89
55391502--55391538
16
2.3
16
86
13
58
40
0
0
59
0.97
55391601--55391650
26
2.0
26
84
11
68
58
2
0
40
1.10
55392352--55392424
33
2.2
33
92
0
128
32
21
19
26
1.97
55400639--55400739
28
3.5
30
82
6
118
29
14
26
28
1.95
55400668--55400743
29
2.7
28
76
13
75
30
14
26
28
1.95
55408492--55408592
28
3.5
30
82
6
118
29
14
26
28
1.95
55408521--55408596
29
2.7
28
76
13
75
30
14
26
28
1.95
55419377--55419477
28
3.5
30
82
6
118
29
14
26
28
1.95
55419406--55419481
29
2.7
28
76
13
75
30
14
26
28
1.95
55427226--55427326
28
3.5
30
82
6
118
29
14
26
28
1.95
55427255--55427330
29
2.7
28
76
13
75
30
14
26
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55442995--55443036
22
1.9
22
85
9
59
50
11
7
30
1.66
55448866--55448903
12
3.2
12
88
0
58
42
0
15
42
1.47
55448868--55448902
18
1.9
18
88
0
52
42
0
17
40
1.49
55457252--55457361
54
2.0
55
96
1
204
18
10
20
50
1.76
55459439--55459509
35
2.0
35
100
0
142
16
11
29
42
1.83
55461838--55461867
14
2.1
15
93
6
53
26
0
20
53
1.46
55462385--55462415
15
2.1
15
93
0
53
19
0
25
54
1.44
55462960--55463210
41
5.8
44
70
15
150
25
17
26
30
1.97
55462960--55463177
41
5.0
45
75
9
186
25
16
25
32
1.97
55462976--55463177
85
2.4
86
83
5
250
26
17
26
29
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292