genome.fa.s9.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  276  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79370341--79371247	443	2.1	428	93	4	1548	31	12	23	31	1.92
79371146--79371247	45	2.3	45	85	8	131	26	22	28	22	1.99
79372675--79372713	18	2.2	18	85	0	51	58	5	0	35	1.20
79380751--79380822	29	2.5	29	72	20	69	51	13	1	33	1.50
79380921--79380951	6	5.2	6	96	0	53	0	12	35	51	1.40
79381141--79381232	47	1.9	47	82	2	112	44	14	11	29	1.80
79390985--79391039	5	11.8	5	98	1	82	65	12	0	21	1.26
79391632--79391659	2	14.0	2	100	0	56	50	0	0	50	1.00
79409926--79409968	20	2.2	20	100	0	86	39	9	30	20	1.84
79410042--79410304	89	3.0	88	92	1	440	38	18	16	26	1.92
79412369--79412409	21	2.0	21	85	0	55	29	2	7	60	1.36
79412406--79412516	59	1.9	59	86	1	161	30	7	12	49	1.68
79423018--79423054	19	1.9	19	94	0	65	70	0	29	0	0.88
79424066--79424180	51	2.2	54	82	4	137	19	20	19	40	1.91
79424306--79424477	54	3.2	54	94	1	283	39	11	13	34	1.82
79424306--79424477	18	9.6	18	81	0	191	39	11	13	34	1.82
79424794--79424859	33	2.0	33	100	0	132	33	0	15	51	1.43
79427482--79427545	32	2.0	32	100	0	128	34	15	12	37	1.85
79430070--79430290	46	4.8	46	92	1	309	40	13	23	22	1.90
79431111--79431243	49	2.6	51	84	2	180	29	27	20	23	1.99
79433495--79433538	23	1.9	23	81	9	54	40	9	9	40	1.68
79436090--79436130	13	2.9	14	82	17	50	21	0	17	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79436924--79437018	41	2.3	41	83	7	113	36	20	21	22	1.95
79440018--79440052	18	1.9	18	88	0	52	65	5	20	8	1.40
79441600--79441686	21	4.0	23	77	11	83	16	21	24	37	1.93
79441612--79441661	21	2.3	22	93	6	84	12	26	28	34	1.92
79447947--79447981	18	1.9	18	94	0	61	68	5	17	8	1.35
79447954--79448008	27	1.9	30	82	10	71	70	5	20	3	1.22
79449532--79449617	21	3.9	23	80	10	90	15	22	25	37	1.93
79450992--79451029	14	2.7	14	87	0	58	23	0	26	50	1.50
79451144--79451210	32	2.1	32	94	0	116	32	4	14	47	1.65
79458301--79459578	643	2.0	643	97	0	2421	30	15	19	34	1.92
79460466--79460554	44	2.0	44	100	0	178	26	13	13	46	1.80
79462333--79462380	20	2.4	21	82	10	64	25	0	6	68	1.12
79462318--79462388	33	2.2	32	85	7	90	29	0	4	66	1.11
79462542--79462684	43	3.3	43	89	0	205	21	17	30	30	1.96
79464124--79464181	30	1.9	30	89	3	89	56	6	20	15	1.62
79472720--79472934	101	2.1	102	91	2	353	38	14	20	25	1.91
79472722--79472934	50	4.2	50	92	3	338	38	14	21	25	1.91
79472925--79473073	31	4.8	31	87	1	192	26	18	28	26	1.98
79473072--79473098	7	3.9	7	100	0	54	44	14	25	14	1.84
79473104--79473268	47	3.6	47	83	7	164	28	14	26	30	1.95
79473199--79473355	42	3.7	43	88	4	230	30	14	26	29	1.94
79478337--79478369	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79483783--79483950	35	4.6	36	84	7	180	32	23	11	32	1.90
79483778--79483950	75	2.4	73	82	9	201	32	23	11	32	1.90
79487915--79488001	21	4.0	23	80	10	92	37	25	21	14	1.92
79488372--79488429	15	3.8	15	88	2	89	51	12	0	36	1.39
79489742--79489770	8	3.6	8	100	0	58	62	0	0	37	0.96
79492348--79492399	18	2.9	18	88	0	77	30	17	34	17	1.93
79492493--79492623	44	3.0	44	78	5	158	35	21	29	14	1.93
79495177--79495337	44	3.5	44	83	11	214	30	15	22	31	1.95
79495179--79495334	51	3.2	51	83	11	209	30	15	23	30	1.95
79496829--79496886	28	2.1	28	100	0	116	31	17	31	20	1.96
79502954--79503111	51	3.1	51	96	0	280	31	15	24	29	1.95
79508891--79508934	23	2.0	21	82	8	52	52	6	0	40	1.28
79520190--79520231	7	5.2	8	86	13	52	0	11	0	88	0.53
79522262--79522395	67	2.0	67	98	0	259	14	15	22	47	1.82
79527336--79527362	5	5.4	5	100	0	54	18	0	59	22	1.38
79530520--79530552	2	16.5	2	100	0	66	48	0	0	51	1.00
79531798--79531824	10	2.7	10	100	0	54	22	0	0	77	0.76
79540095--79540150	14	4.2	13	80	13	60	57	1	1	39	1.20
79542084--79542112	14	2.0	15	93	6	51	72	0	0	27	0.85
79546034--79546103	11	6.4	11	79	0	50	67	10	5	17	1.39
79551677--79551749	37	2.0	37	94	0	128	34	21	12	31	1.91
79554201--79554250	18	2.8	18	81	3	57	34	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79554199--79554250	25	2.0	26	85	10	72	36	0	0	63	0.95
79554208--79554253	17	2.6	18	82	3	58	36	0	0	63	0.95
79562233--79562510	46	6.0	46	88	0	378	39	14	24	22	1.90
79563594--79563620	10	2.7	10	100	0	54	48	0	7	44	1.31
79569206--79569256	23	2.2	24	89	10	79	62	1	0	35	1.06
79569267--79569332	14	4.5	14	76	17	55	66	1	1	30	1.10
79579745--79579769	11	2.3	11	100	0	50	72	8	0	20	1.10
79586691--79586728	20	1.9	20	89	10	60	60	10	5	23	1.50
79586704--79586763	29	2.1	28	87	6	86	58	11	3	26	1.49
79587747--79587786	17	2.3	18	80	20	50	57	5	2	35	1.34
79597246--79597319	37	2.0	37	97	0	139	37	20	13	28	1.90
79597689--79597982	146	2.0	146	100	0	588	37	21	16	25	1.93
79604994--79605055	13	4.7	13	81	2	70	45	6	12	35	1.68
79612526--79612555	2	15.5	2	93	6	53	50	0	0	50	1.00
79616440--79616650	51	4.2	51	93	1	343	29	22	14	33	1.93
79616437--79616650	101	2.1	102	92	0	358	29	22	14	33	1.93
79623225--79623435	51	4.2	51	93	1	325	30	22	13	33	1.93
79623222--79623435	101	2.1	102	91	0	340	30	22	13	33	1.93
79648412--79648490	29	2.6	29	78	13	79	55	2	1	40	1.21
79650016--79650132	20	5.4	20	71	18	74	61	2	1	34	1.20
79650008--79650122	29	4.0	28	74	11	108	62	3	0	33	1.18
79650702--79650769	10	7.4	9	76	11	59	33	1	4	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79655449--79655489	20	2.1	20	86	4	57	43	4	9	41	1.59
79670770--79670818	16	3.0	16	82	5	62	51	0	0	48	1.00
79681855--79681923	31	2.3	31	85	7	88	49	5	4	40	1.47
79682763--79682796	2	17.0	2	93	0	59	47	0	0	52	1.00
79684807--79684887	40	2.0	40	85	0	108	62	9	2	24	1.38
79684873--79684930	20	2.9	19	71	14	55	62	0	3	34	1.12
79684909--79684954	23	2.0	23	86	0	65	67	0	0	32	0.91
79690105--79690276	75	2.4	73	83	8	217	33	23	11	31	1.90
79690110--79690276	35	4.6	35	86	7	192	33	23	10	31	1.89
79697582--79697753	75	2.4	73	83	8	217	33	23	11	31	1.90
79697587--79697753	35	4.6	35	86	7	192	33	23	10	31	1.89
79700568--79700607	3	13.3	3	100	0	80	32	0	0	67	0.91
79702633--79702697	28	2.3	28	94	0	112	29	21	6	43	1.77
79713254--79713369	27	4.3	27	63	18	69	31	2	6	58	1.38
79713205--79713373	82	2.1	82	97	0	320	29	2	6	60	1.36
79713622--79713673	13	3.9	14	87	7	65	48	26	0	25	1.52
79723649--79723816	35	4.6	35	85	7	185	33	23	10	32	1.89
79723644--79723816	75	2.4	73	83	9	210	33	23	10	32	1.89
79733021--79733052	16	2.0	16	100	0	64	50	0	12	37	1.41
79737115--79737148	12	2.8	12	86	0	50	32	2	17	47	1.63
79740578--79740658	31	2.6	31	80	3	92	58	13	4	23	1.55
79741373--79741431	31	1.9	31	89	0	91	45	6	11	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79743498--79743522	10	2.5	10	100	0	50	8	0	0	92	0.40
79749070--79749512	222	2.0	222	100	0	886	39	21	14	24	1.91
79760148--79760210	28	2.2	28	88	0	90	31	7	28	31	1.86
79760730--79760793	30	2.1	31	88	2	94	34	3	7	54	1.45
79763556--79763580	5	5.0	5	100	0	50	60	0	0	40	0.97
79767961--79767992	11	2.9	11	95	0	55	31	9	6	53	1.58
79768034--79768092	30	2.0	30	96	0	109	25	6	13	54	1.64
79777140--79777193	26	2.1	26	100	0	108	48	7	14	29	1.71
79789059--79789116	29	2.0	29	100	0	116	31	13	20	34	1.92
79789532--79789583	25	2.1	25	100	0	104	53	19	15	11	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292