genome.fa.s9.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  176  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52433872--52433915	20	2.2	20	100	0	88	34	18	11	36	1.86
52433952--52433999	25	1.9	25	86	0	69	25	16	25	33	1.96
52435236--52435493	27	9.6	27	88	4	344	39	8	23	28	1.84
52435238--52435493	133	1.9	135	89	3	401	39	8	23	28	1.84
52435226--52435510	133	2.1	134	82	6	380	37	8	23	30	1.84
52438343--52438406	31	2.1	31	93	0	110	23	23	15	37	1.93
52438654--52438687	17	2.0	17	100	0	68	17	23	29	29	1.97
52438620--52438755	23	6.1	23	86	11	169	25	21	23	29	1.99
52438809--52438852	20	2.2	20	100	0	88	34	18	11	36	1.86
52440176--52440434	27	9.6	27	87	4	344	39	8	23	28	1.84
52440178--52440434	134	1.9	135	89	2	401	39	8	23	28	1.84
52440166--52440451	134	2.1	134	82	5	380	37	8	23	30	1.84
52440176--52440436	107	2.4	107	87	3	301	39	8	24	28	1.84
52443283--52443346	31	2.1	31	93	0	110	23	23	15	37	1.93
52443553--52443677	23	5.4	24	89	8	179	25	22	22	29	1.99
52445072--52445332	27	9.7	27	87	5	312	38	7	24	29	1.83
52445074--52445332	81	3.2	81	86	4	362	38	7	24	29	1.83
52445072--52445334	54	4.9	53	85	4	357	38	7	24	29	1.83
52448976--52449055	28	2.9	28	89	7	119	26	30	17	26	1.97
52448950--52449057	28	3.9	29	84	7	118	25	32	16	25	1.96
52449272--52449308	16	2.3	16	90	0	56	21	21	5	51	1.68
52450531--52450562	16	2.0	16	93	0	55	9	6	34	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52454095--52454196	28	3.5	29	81	6	109	28	27	14	29	1.95
52457485--52457607	29	4.2	29	98	0	237	30	15	27	26	1.96
52457486--52457644	58	2.7	58	90	1	212	27	15	31	25	1.96
52457485--52457644	87	1.8	87	86	2	232	26	15	31	26	1.96
52457485--52457673	87	2.2	87	83	3	229	26	16	31	25	1.96
52457706--52457740	2	17.5	2	100	0	70	48	0	0	51	1.00
52473293--52473320	14	2.0	14	100	0	56	28	14	14	42	1.84
52484948--52485054	42	2.5	42	78	4	126	26	16	24	32	1.96
52484907--52485065	43	3.7	43	72	10	128	26	18	23	30	1.98
52492570--52492665	44	2.2	44	92	0	156	29	17	23	29	1.97
52492582--52492716	44	3.1	44	86	4	159	23	19	25	31	1.98
52499539--52500062	262	2.0	262	97	0	985	38	15	15	29	1.89
52500612--52500698	22	4.0	22	78	3	86	34	21	25	18	1.96
52500724--52500847	43	2.9	43	87	0	167	25	31	20	22	1.98
52504481--52504576	32	3.1	30	80	6	84	34	19	26	19	1.96
52504506--52504584	30	2.6	30	87	4	113	34	18	25	21	1.96
52504590--52504631	22	1.9	22	95	0	75	35	26	21	16	1.94
52504664--52504789	43	2.9	43	86	0	171	25	30	21	23	1.99
52505088--52505195	27	4.1	27	83	4	139	30	9	21	38	1.85
52505092--52505195	52	2.0	54	88	7	160	30	9	21	38	1.85
52506622--52506684	24	2.7	23	78	7	63	19	39	3	38	1.67
52513229--52513287	23	2.6	22	76	10	57	33	16	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52513281--52513345	24	2.8	24	79	11	71	38	15	20	26	1.92
52517856--52518035	48	3.7	48	88	0	270	22	17	33	27	1.96
52520500--52520741	50	4.8	50	80	6	231	30	25	18	25	1.98
52531973--52532148	48	3.6	48	90	2	262	25	17	31	26	1.97
52535919--52536040	42	2.8	43	79	10	142	32	26	15	25	1.95
52536386--52536410	12	2.1	12	100	0	50	48	8	0	44	1.32
52538320--52538482	29	5.6	29	87	1	193	27	26	15	29	1.96
52540391--52540415	13	1.9	13	100	0	50	40	24	4	32	1.73
52546448--52546526	42	1.9	41	86	2	113	29	29	17	24	1.97
52552688--52552753	26	2.5	26	82	2	78	36	37	15	10	1.82
52556182--52556305	50	2.4	50	81	9	160	37	14	12	34	1.85
52558274--52558303	14	2.2	14	94	5	53	6	23	6	63	1.43
52558337--52558384	18	2.8	17	72	9	53	14	18	0	66	1.25
52560758--52560828	37	1.9	37	100	0	142	22	33	22	21	1.97
52560756--52560842	37	2.3	36	90	5	138	25	33	20	20	1.97
52560911--52561125	49	4.4	49	94	2	387	30	27	8	33	1.86
52565913--52565964	18	2.9	17	77	16	52	38	0	34	26	1.57
52568702--52568733	8	4.0	8	100	0	64	25	0	0	75	0.81
52570096--52570247	42	3.6	42	76	6	121	30	15	25	28	1.95
52571199--52571244	24	1.9	24	90	0	74	26	2	26	45	1.65
52572845--52573020	46	3.8	46	80	12	225	21	21	28	28	1.98
52572842--52573012	93	1.8	93	96	0	315	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52575964--52576032	15	4.6	15	83	0	84	11	17	13	57	1.64
52575955--52576042	30	3.0	30	81	8	99	10	17	15	56	1.66
52578411--52578586	46	3.8	46	80	12	225	21	21	28	28	1.98
52578408--52578578	93	1.8	93	96	0	315	21	21	29	28	1.98
52590760--52590789	15	2.0	15	93	0	51	23	13	6	56	1.60
52591723--52591766	17	2.8	16	80	10	54	15	20	0	63	1.31
52597039--52597076	20	1.9	20	94	0	67	42	23	28	5	1.76
52601095--52601132	6	6.0	6	93	6	58	63	34	0	2	1.09
52601948--52602147	102	2.0	101	95	1	364	38	12	6	44	1.66
52602516--52602547	17	1.9	17	93	6	57	37	9	6	46	1.61
52609007--52609065	29	2.0	29	93	0	100	23	23	11	40	1.88
52610355--52610617	145	1.8	145	87	3	395	41	9	7	41	1.67
52611764--52611811	25	1.9	26	87	8	73	33	29	8	29	1.86
52620779--52620810	13	2.5	13	100	0	64	31	40	21	6	1.78
52622255--52622317	30	2.1	30	84	0	81	26	22	14	36	1.92
52624329--52624580	45	5.5	45	88	1	342	26	31	17	25	1.97
52629587--52629638	2	26.0	2	96	0	95	51	0	0	48	1.00
52630946--52631082	48	2.9	48	82	2	170	23	29	19	27	1.98
52631299--52631336	19	2.0	19	94	0	67	28	15	13	42	1.85
52634348--52634390	20	2.2	20	91	0	68	25	11	11	51	1.72
52636510--52636550	21	2.0	21	85	4	57	70	0	2	26	0.99
52646050--52646079	12	2.5	12	94	0	51	43	13	16	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52646304--52646337	17	1.9	18	94	5	61	23	20	5	50	1.70
52646967--52647017	22	2.4	21	84	12	68	23	3	3	68	1.23
52647029--52647078	20	2.5	21	80	6	59	36	0	6	58	1.23
52647163--52647201	9	4.3	9	86	0	51	33	5	12	48	1.63
52648023--52648061	19	2.0	19	85	14	53	48	7	10	33	1.66
52648290--52648455	82	2.0	82	94	0	287	24	12	23	40	1.88
52649167--52649230	29	2.2	29	94	0	110	32	3	15	48	1.61
52656514--52656590	16	4.7	16	78	10	75	27	7	16	48	1.74
52665206--52665234	5	5.8	5	100	0	58	0	20	0	79	0.74
52677304--52677364	13	4.7	13	78	8	61	27	4	27	39	1.77
52677593--52677660	19	3.4	19	76	13	66	51	1	1	45	1.19
52691061--52691244	40	4.6	39	75	6	138	26	23	27	22	2.00
52691101--52691289	80	2.4	81	77	4	186	23	24	29	22	1.99
52699174--52699357	40	4.6	39	75	6	138	26	23	27	22	2.00
52699214--52699402	80	2.4	81	77	4	186	23	24	29	22	1.99
52701563--52701594	11	3.0	11	95	4	57	18	9	0	71	1.12
52705873--52705911	7	5.6	7	91	8	62	87	0	12	0	0.55
52705873--52705911	15	2.8	14	88	11	62	87	0	12	0	0.55
52711754--52711915	85	1.9	85	80	3	191	25	15	25	33	1.95
52729356--52729421	21	3.0	22	78	8	89	39	24	21	15	1.91
52729358--52729421	23	2.9	23	81	4	78	39	25	21	14	1.91
52729809--52729853	15	3.0	15	80	0	63	51	13	2	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52731951--52731980	11	2.7	11	94	0	51	26	26	3	43	1.70
52733070--52733182	40	2.8	41	80	11	124	37	23	19	20	1.95
52735518--52735616	47	2.1	47	94	0	171	30	10	13	46	1.75
52737271--52737312	17	2.5	18	77	14	54	47	0	2	50	1.14
52737384--52737433	24	2.1	24	85	7	66	42	8	4	46	1.52
52739907--52739942	19	1.9	19	94	5	65	36	0	38	25	1.56
52747494--52747664	50	3.6	48	83	7	188	24	28	19	28	1.98
52753348--52753399	24	2.2	24	92	0	86	51	7	3	36	1.49
52754537--52755350	405	2.0	406	96	0	1515	31	12	12	43	1.79
52755490--52755642	77	2.0	77	94	0	270	42	4	20	32	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292